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***  cd1d  ***

B-factor analysis for ID 2402011637291200144

Overall B-factor prediction

%Bfactors-Wn> Experimental B-factors are nearly constant !

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

  ATOM TYP  RES  RESID   B-PREDICT    B-SCALED      B-OBS
B-SCALEDB-OBS
     2 CA   GLN      5      0.0180      0.0000      0.0000
    21 CA   ARG      6      0.0217      0.0000      0.0000
    45 CA   LEU      7      0.0151      0.0000      0.0000
    64 CA   PHE      8      0.0105      0.0000      0.0000
    84 CA   PRO      9      0.0087      0.0000      0.0000
    98 CA   LEU     10      0.0059      0.0000      0.0000
   117 CA   ARG     11      0.0065      0.0000      0.0000
   141 CA   CYS     12      0.0050      0.0000      0.0000
   152 CA   LEU     13      0.0070      0.0000      0.0000
   171 CA   GLN     14      0.0068      0.0000      0.0000
   188 CA   ILE     15      0.0116      0.0000      0.0000
   207 CA   SER     16      0.0110      0.0000      0.0000
   218 CA   SER     17      0.0181      0.0000      0.0000
   229 CA   PHE     18      0.0196      0.0000      0.0000
   249 CA   ALA     19      0.0323      0.0000      0.0000
   259 CA   ASN     20      0.0323      0.0000      0.0000
   273 CA   SER     21      0.0296      0.0000      0.0000
   284 CA   SER     22      0.0388      0.0000      0.0000
   295 CA   TRP     23      0.0312      0.0000      0.0000
   319 CA   THR     24      0.0206      0.0000      0.0000
   333 CA   ARG     25      0.0159      0.0000      0.0000
   357 CA   THR     26      0.0102      0.0000      0.0000
   371 CA   ASP     27      0.0099      0.0000      0.0000
   383 CA   GLY     28      0.0072      0.0000      0.0000
   390 CA   LEU     29      0.0069      0.0000      0.0000
   409 CA   ALA     30      0.0058      0.0000      0.0000
   419 CA   TRP     31      0.0073      0.0000      0.0000
   443 CA   LEU     32      0.0070      0.0000      0.0000
   462 CA   GLY     33      0.0096      0.0000      0.0000
   469 CA   GLU     34      0.0109      0.0000      0.0000
   484 CA   LEU     35      0.0100      0.0000      0.0000
   503 CA   GLN     36      0.0089      0.0000      0.0000
   520 CA   THR     37      0.0068      0.0000      0.0000
   534 CA   HIS     38      0.0066      0.0000      0.0000
   551 CA   SER     39      0.0091      0.0000      0.0000
   562 CA   TRP     40      0.0077      0.0000      0.0000
   586 CA   SER     41      0.0133      0.0000      0.0000
   597 CA   ASN     42      0.0134      0.0000      0.0000
   611 CA   ASP     43      0.0279      0.0000      0.0000
   623 CA   SER     44      0.0173      0.0000      0.0000
   634 CA   ASP     45      0.0159      0.0000      0.0000
   646 CA   THR     46      0.0106      0.0000      0.0000
   660 CA   VAL     47      0.0071      0.0000      0.0000
   676 CA   ARG     48      0.0103      0.0000      0.0000
   700 CA   SER     49      0.0088      0.0000      0.0000
   711 CA   LEU     50      0.0108      0.0000      0.0000
   730 CA   LYS     51      0.0108      0.0000      0.0000
   752 CA   PRO     52      0.0151      0.0000      0.0000
   766 CA   TRP     53      0.0085      0.0000      0.0000
   790 CA   SER     54      0.0066      0.0000      0.0000
   801 CA   GLN     55      0.0069      0.0000      0.0000
   818 CA   GLY     56      0.0067      0.0000      0.0000
   825 CA   THR     57      0.0092      0.0000      0.0000
   839 CA   PHE     58      0.0089      0.0000      0.0000
   859 CA   SER     59      0.0209      0.0000      0.0000
   870 CA   ASP     60      0.0221      0.0000      0.0000
   882 CA   GLN     61      0.0234      0.0000      0.0000
   899 CA   GLN     62      0.0138      0.0000      0.0000
   916 CA   TRP     63      0.0083      0.0000      0.0000
   940 CA   GLU     64      0.0114      0.0000      0.0000
   955 CA   THR     65      0.0118      0.0000      0.0000
   969 CA   LEU     66      0.0068      0.0000      0.0000
   988 CA   GLN     67      0.0074      0.0000      0.0000
  1005 CA   HIS     68      0.0104      0.0000      0.0000
  1022 CA   ILE     69      0.0068      0.0000      0.0000
  1041 CA   PHE     70      0.0052      0.0000      0.0000
  1061 CA   ARG     71      0.0086      0.0000      0.0000
  1085 CA   VAL     72      0.0109      0.0000      0.0000
  1101 CA   TYR     73      0.0065      0.0000      0.0000
  1122 CA   ARG     74      0.0064      0.0000      0.0000
  1146 CA   SER     75      0.0122      0.0000      0.0000
  1157 CA   SER     76      0.0127      0.0000      0.0000
  1168 CA   PHE     77      0.0077      0.0000      0.0000
  1188 CA   THR     78      0.0100      0.0000      0.0000
  1202 CA   ARG     79      0.0156      0.0000      0.0000
  1226 CA   ASP     80      0.0137      0.0000      0.0000
  1238 CA   VAL     81      0.0124      0.0000      0.0000
  1254 CA   LYS     82      0.0171      0.0000      0.0000
  1276 CA   GLU     83      0.0200      0.0000      0.0000
  1291 CA   PHE     84      0.0178      0.0000      0.0000
  1311 CA   ALA     85      0.0218      0.0000      0.0000
  1321 CA   LYS     86      0.0287      0.0000      0.0000
  1343 CA   MET     87      0.0276      0.0000      0.0000
  1360 CA   LEU     88      0.0272      0.0000      0.0000
  1379 CA   ARG     89      0.0369      0.0000      0.0000
  1403 CA   LEU     90      0.0304      0.0000      0.0000
  1422 CA   SER     91      0.0362      0.0000      0.0000
  1433 CA   TYR     92      0.0322      0.0000      0.0000
  1454 CA   PRO     93      0.0315      0.0000      0.0000
  1468 CA   LEU     94      0.0227      0.0000      0.0000
  1487 CA   GLU     95      0.0194      0.0000      0.0000
  1502 CA   LEU     96      0.0134      0.0000      0.0000
  1521 CA   GLN     97      0.0111      0.0000      0.0000
  1538 CA   VAL     98      0.0077      0.0000      0.0000
  1554 CA   SER     99      0.0081      0.0000      0.0000
  1565 CA   ALA    100      0.0059      0.0000      0.0000
  1575 CA   GLY    101      0.0054      0.0000      0.0000
  1582 CA   CYS    102      0.0072      0.0000      0.0000
  1592 CA   GLU    103      0.0098      0.0000      0.0000
  1607 CA   VAL    104      0.0109      0.0000      0.0000
  1623 CA   HIS    105      0.0227      0.0000      0.0000
  1640 CA   PRO    106      0.0427      0.0000      0.0000
  1654 CA   GLY    107      0.0784      0.0000      0.0000
  1661 CA   ASN    108      0.0524      0.0000      0.0000
  1675 CA   ALA    109      0.0249      0.0000      0.0000
  1685 CA   SER    110      0.0154      0.0000      0.0000
  1696 CA   ASN    111      0.0164      0.0000      0.0000
  1710 CA   ASN    112      0.0101      0.0000      0.0000
  1724 CA   PHE    113      0.0088      0.0000      0.0000
  1744 CA   PHE    114      0.0070      0.0000      0.0000
  1764 CA   HIS    115      0.0110      0.0000      0.0000
  1781 CA   VAL    116      0.0108      0.0000      0.0000
  1797 CA   ALA    117      0.0169      0.0000      0.0000
  1807 CA   PHE    118      0.0192      0.0000      0.0000
  1827 CA   GLN    119      0.0283      0.0000      0.0000
  1844 CA   GLY    120      0.0319      0.0000      0.0000
  1851 CA   LYS    121      0.0344      0.0000      0.0000
  1873 CA   ASP    122      0.0250      0.0000      0.0000
  1885 CA   ILE    123      0.0206      0.0000      0.0000
  1904 CA   LEU    124      0.0160      0.0000      0.0000
  1923 CA   SER    125      0.0127      0.0000      0.0000
  1934 CA   PHE    126      0.0107      0.0000      0.0000
  1954 CA   GLN    127      0.0167      0.0000      0.0000
  1971 CA   GLY    128      0.0176      0.0000      0.0000
  1978 CA   THR    129      0.0177      0.0000      0.0000
  1992 CA   SER    130      0.0159      0.0000      0.0000
  2003 CA   TRP    131      0.0139      0.0000      0.0000
  2027 CA   GLU    132      0.0193      0.0000      0.0000
  2042 CA   PRO    133      0.0230      0.0000      0.0000
  2056 CA   THR    134      0.0287      0.0000      0.0000
  2070 CA   GLN    135      0.0677      0.0000      0.0000
  2087 CA   GLU    136      0.0615      0.0000      0.0000
  2102 CA   ALA    137      0.0342      0.0000      0.0000
  2112 CA   PRO    138      0.0385      0.0000      0.0000
  2126 CA   LEU    139      0.0414      0.0000      0.0000
  2145 CA   TRP    140      0.0312      0.0000      0.0000
  2169 CA   VAL    141      0.0226      0.0000      0.0000
  2185 CA   ASN    142      0.0269      0.0000      0.0000
  2199 CA   LEU    143      0.0255      0.0000      0.0000
  2218 CA   ALA    144      0.0177      0.0000      0.0000
  2228 CA   ILE    145      0.0175      0.0000      0.0000
  2247 CA   GLN    146      0.0236      0.0000      0.0000
  2264 CA   VAL    147      0.0200      0.0000      0.0000
  2280 CA   LEU    148      0.0144      0.0000      0.0000
  2299 CA   ASN    149      0.0187      0.0000      0.0000
  2313 CA   GLN    150      0.0263      0.0000      0.0000
  2330 CA   ASP    151      0.0226      0.0000      0.0000
  2342 CA   LYS    152      0.0238      0.0000      0.0000
  2364 CA   TRP    153      0.0190      0.0000      0.0000
  2388 CA   THR    154      0.0119      0.0000      0.0000
  2402 CA   ARG    155      0.0124      0.0000      0.0000
  2426 CA   GLU    156      0.0155      0.0000      0.0000
  2441 CA   THR    157      0.0097      0.0000      0.0000
  2455 CA   VAL    158      0.0069      0.0000      0.0000
  2471 CA   GLN    159      0.0097      0.0000      0.0000
  2488 CA   TRP    160      0.0093      0.0000      0.0000
  2512 CA   LEU    161      0.0056      0.0000      0.0000
  2531 CA   LEU    162      0.0061      0.0000      0.0000
  2550 CA   ASN    163      0.0094      0.0000      0.0000
  2564 CA   GLY    164      0.0099      0.0000      0.0000
  2571 CA   THR    165      0.0062      0.0000      0.0000
  2585 CA   CYS    166      0.0051      0.0000      0.0000
  2595 CA   PRO    167      0.0073      0.0000      0.0000
  2609 CA   GLN    168      0.0078      0.0000      0.0000
  2626 CA   PHE    169      0.0050      0.0000      0.0000
  2646 CA   VAL    170      0.0055      0.0000      0.0000
  2662 CA   SER    171      0.0081      0.0000      0.0000
  2673 CA   GLY    172      0.0071      0.0000      0.0000
  2680 CA   LEU    173      0.0059      0.0000      0.0000
  2699 CA   LEU    174      0.0076      0.0000      0.0000
  2718 CA   GLU    175      0.0107      0.0000      0.0000
  2733 CA   SER    176      0.0094      0.0000      0.0000
  2744 CA   GLY    177      0.0089      0.0000      0.0000
  2751 CA   LYS    178      0.0116      0.0000      0.0000
  2773 CA   SER    179      0.0138      0.0000      0.0000
  2784 CA   GLU    180      0.0113      0.0000      0.0000
  2799 CA   LEU    181      0.0096      0.0000      0.0000
  2818 CA   LYS    182      0.0143      0.0000      0.0000
  2840 CA   LYS    183      0.0138      0.0000      0.0000
  2862 CA   GLN    184      0.0139      0.0000      0.0000
  2879 CA   VAL    185      0.0137      0.0000      0.0000
  2895 CA   LYS    186      0.0141      0.0000      0.0000
  2917 CA   PRO    187      0.0105      0.0000      0.0000
  2931 CA   LYS    188      0.0165      0.0000      0.0000
  2953 CA   ALA    189      0.0113      0.0000      0.0000
  2963 CA   TRP    190      0.0148      0.0000      0.0000
  2987 CA   LEU    191      0.0169      0.0000      0.0000
  3006 CA   SER    192      0.0261      0.0000      0.0000
  3017 CA   ARG    193      0.0397      0.0000      0.0000
  3041 CA   GLY    194      0.0517      0.0000      0.0000
  3048 CA   PRO    195      0.0819      0.0000      0.0000
  3062 CA   SER    196      0.0722      0.0000      0.0000
  3073 CA   PRO    197      0.0998      0.0000      0.0000
  3087 CA   GLY    198      0.1288      0.0000      0.0000
  3094 CA   PRO    199      0.1799      0.0000      0.0000
  3108 CA   GLY    200      0.1251      0.0000      0.0000
  3115 CA   ARG    201      0.0720      0.0000      0.0000
  3139 CA   LEU    202      0.0487      0.0000      0.0000
  3158 CA   LEU    203      0.0397      0.0000      0.0000
  3177 CA   LEU    204      0.0251      0.0000      0.0000
  3196 CA   VAL    205      0.0185      0.0000      0.0000
  3212 CA   CYS    206      0.0112      0.0000      0.0000
  3222 CA   HIS    207      0.0107      0.0000      0.0000
  3239 CA   VAL    208      0.0079      0.0000      0.0000
  3255 CA   SER    209      0.0107      0.0000      0.0000
  3266 CA   GLY    210      0.0121      0.0000      0.0000
  3273 CA   PHE    211      0.0085      0.0000      0.0000
  3293 CA   TYR    212      0.0088      0.0000      0.0000
  3314 CA   PRO    213      0.0105      0.0000      0.0000
  3328 CA   LYS    214      0.0115      0.0000      0.0000
  3350 CA   PRO    215      0.0135      0.0000      0.0000
  3364 CA   VAL    216      0.0108      0.0000      0.0000
  3380 CA   TRP    217      0.0159      0.0000      0.0000
  3404 CA   VAL    218      0.0118      0.0000      0.0000
  3420 CA   LYS    219      0.0182      0.0000      0.0000
  3442 CA   TRP    220      0.0189      0.0000      0.0000
  3466 CA   MET    221      0.0262      0.0000      0.0000
  3483 CA   ARG    222      0.0374      0.0000      0.0000
  3507 CA   GLY    223      0.0528      0.0000      0.0000
  3514 CA   GLU    224      0.0653      0.0000      0.0000
  3529 CA   GLN    225      0.0591      0.0000      0.0000
  3546 CA   GLU    226      0.0417      0.0000      0.0000
  3561 CA   GLN    227      0.0412      0.0000      0.0000
  3578 CA   GLN    228      0.0608      0.0000      0.0000
  3595 CA   GLY    229      0.0506      0.0000      0.0000
  3602 CA   THR    230      0.0334      0.0000      0.0000
  3616 CA   GLN    231      0.0371      0.0000      0.0000
  3633 CA   PRO    232      0.0278      0.0000      0.0000
  3647 CA   GLY    233      0.0292      0.0000      0.0000
  3654 CA   ASP    234      0.0317      0.0000      0.0000
  3666 CA   ILE    235      0.0190      0.0000      0.0000
  3685 CA   LEU    236      0.0239      0.0000      0.0000
  3704 CA   PRO    237      0.0231      0.0000      0.0000
  3718 CA   ASN    238      0.0236      0.0000      0.0000
  3732 CA   ALA    239      0.0520      0.0000      0.0000
  3742 CA   ASP    240      0.0343      0.0000      0.0000
  3754 CA   GLU    241      0.0139      0.0000      0.0000
  3769 CA   THR    242      0.0123      0.0000      0.0000
  3783 CA   TRP    243      0.0116      0.0000      0.0000
  3807 CA   TYR    244      0.0118      0.0000      0.0000
  3828 CA   LEU    245      0.0133      0.0000      0.0000
  3847 CA   ARG    246      0.0146      0.0000      0.0000
  3871 CA   ALA    247      0.0159      0.0000      0.0000
  3881 CA   THR    248      0.0237      0.0000      0.0000
  3895 CA   LEU    249      0.0308      0.0000      0.0000
  3914 CA   ASP    250      0.0442      0.0000      0.0000
  3926 CA   VAL    251      0.0535      0.0000      0.0000
  3942 CA   VAL    252      0.0683      0.0000      0.0000
  3958 CA   ALA    253      0.0668      0.0000      0.0000
  3968 CA   GLY    254      0.0710      0.0000      0.0000
  3975 CA   GLU    255      0.0478      0.0000      0.0000
  3990 CA   ALA    256      0.0444      0.0000      0.0000
  4000 CA   ALA    257      0.0485      0.0000      0.0000
  4010 CA   GLY    258      0.0428      0.0000      0.0000
  4017 CA   LEU    259      0.0271      0.0000      0.0000
  4036 CA   SER    260      0.0192      0.0000      0.0000
  4047 CA   CYS    261      0.0120      0.0000      0.0000
  4057 CA   ARG    262      0.0135      0.0000      0.0000
  4081 CA   VAL    263      0.0096      0.0000      0.0000
  4097 CA   LYS    264      0.0137      0.0000      0.0000
  4119 CA   HIS    265      0.0114      0.0000      0.0000
  4136 CA   SER    266      0.0148      0.0000      0.0000
  4147 CA   SER    267      0.0161      0.0000      0.0000
  4158 CA   LEU    268      0.0198      0.0000      0.0000
  4177 CA   GLU    269      0.0422      0.0000      0.0000
  4192 CA   GLY    270      0.0394      0.0000      0.0000
  4199 CA   GLN    271      0.0334      0.0000      0.0000
  4216 CA   ASP    272      0.0200      0.0000      0.0000
  4228 CA   ILE    273      0.0145      0.0000      0.0000
  4247 CA   VAL    274      0.0170      0.0000      0.0000
  4263 CA   LEU    275      0.0168      0.0000      0.0000
  4282 CA   TYR    276      0.0232      0.0000      0.0000
  4303 CA   TRP    277      0.0261      0.0000      0.0000
  4327 CA   HIS    278      0.0358      0.0000      0.0000

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.