Should you encounter any unexpected behaviour,
please let us know.

* CYTOKINE 20-DEC-14 4XDX *

B-factor analysis for ID 2402020545381255676

Overall B-factor prediction

Correlation= 0.838 for 89 C-alpha atoms.

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

ATOM TYP RES RESID B-PREDICT B-SCALED B-OBS	B-SCALED	B-OBS
2 CA LYS 3 0.1708 39.1725 31.9900
7 CA GLU 4 0.0373 14.7912 16.4000
8 CA GLU 4 0.0375 14.8277 18.4000
33 CA LEU 5 0.0110 9.9918 11.1300
52 CA ARG 6 0.0130 10.3529 8.9300
53 CA ARG 6 0.0131 10.3712 10.2000
97 CA CYS 7 0.0070 9.2571 8.8500
107 CA GLN 8 0.0069 9.2436 10.2900
124 CA CYS 9 0.0109 9.9678 9.8400
134 CA ILE 10 0.0294 13.3405 15.3800
153 CA LYS 11 0.0146 10.6445 12.7000
154 CA LYS 11 0.0144 10.6091 12.2900
194 CA THR 12 0.0038 8.6711 9.0700
208 CA TYR 13 0.0035 8.6056 8.3200
229 CA SER 14 0.0071 9.2749 12.4600
230 CA SER 14 0.0072 9.2816 12.4600
248 CA LYS 15 0.0134 10.4241 9.1800
270 CA PRO 16 0.0069 9.2384 8.3700
284 CA PHE 17 0.0032 8.5525 8.6300
304 CA HIS 18 0.0065 9.1601 9.9200
321 CA PRO 19 0.0022 8.3779 9.5600
335 CA LYS 20 0.0069 9.2377 8.6300
357 CA PHE 21 0.0038 8.6741 7.3200
377 CA ILE 22 0.0014 8.2392 7.1100
396 CA LYS 23 0.0033 8.5781 7.1100
397 CA LYS 23 0.0033 8.5759 7.2200
437 CA GLU 24 0.0025 8.4371 6.5400
438 CA GLU 24 0.0025 8.4352 8.2300
464 CA LEU 25 0.0019 8.3300 8.1100
465 CA LEU 25 0.0020 8.3345 6.0600
499 CA ARG 26 0.0033 8.5681 7.0100
500 CA ARG 26 0.0032 8.5622 7.8600
501 CA ARG 26 0.0032 8.5640 7.2900
565 CA VAL 27 0.0030 8.5220 7.0800
581 CA ILE 28 0.0039 8.6958 6.5800
600 CA GLU 29 0.0127 10.3004 6.3100
615 CA SER 30 0.0120 10.1722 6.9100
626 CA GLY 31 0.0356 14.4710 7.6200
633 CA PRO 32 0.0507 17.2406 8.5000
647 CA HIS 33 0.0126 10.2706 7.7400
664 CA CYS 34 0.0102 9.8339 7.4600
674 CA ALA 35 0.0290 13.2763 9.3800
684 CA ASN 36 0.0109 9.9602 10.4900
698 CA THR 37 0.0060 9.0763 6.7400
712 CA GLU 38 0.0026 8.4521 6.6500
727 CA ILE 39 0.0019 8.3190 7.5800
746 CA ILE 40 0.0020 8.3440 8.4400
765 CA VAL 41 0.0014 8.2342 9.8600
781 CA LYS 42 0.0023 8.3859 8.9700
782 CA LYS 42 0.0023 8.3871 9.1700
822 CA LEU 43 0.0024 8.4115 7.7800
841 CA SER 44 0.0058 9.0409 14.0300
852 CA ASP 45 0.0172 11.1167 17.6300
864 CA GLY 46 0.0071 9.2745 12.2500
871 CA ARG 47 0.0088 9.5743 9.8900
895 CA GLU 48 0.0032 8.5633 10.8300
910 CA LEU 49 0.0027 8.4585 9.8400
911 CA LEU 49 0.0027 8.4766 10.6000
945 CA CYS 50 0.0022 8.3803 7.5500
955 CA LEU 51 0.0016 8.2726 7.5500
974 CA ASP 52 0.0036 8.6362 8.7900
986 CA PRO 53 0.0043 8.7554 8.6000
987 CA PRO 53 0.0043 8.7534 9.1100
1011 CA LYS 54 0.0110 9.9762 11.3400
1033 CA GLU 55 0.0048 8.8469 10.0100
1048 CA ASN 56 0.0086 9.5530 10.8900
1049 CA ASN 56 0.0086 9.5515 10.6100
1073 CA TRP 57 0.0035 8.6201 9.0700
1097 CA VAL 58 0.0019 8.3249 7.9400
1113 CA GLN 59 0.0031 8.5491 9.0800
1130 CA ARG 60 0.0036 8.6257 10.3100
1154 CA VAL 61 0.0016 8.2582 8.8400
1155 CA VAL 61 0.0016 8.2585 9.5600
1183 CA VAL 62 0.0014 8.2321 8.7600
1199 CA GLU 63 0.0030 8.5208 8.6200
1200 CA GLU 63 0.0030 8.5212 10.3700
1226 CA LYS 64 0.0023 8.3988 8.9600
1227 CA LYS 64 0.0023 8.3992 7.8300
1267 CA PHE 65 0.0013 8.2120 7.4100
1287 CA LEU 66 0.0033 8.5701 8.5400
1288 CA LEU 66 0.0033 8.5718 8.8700
1322 CA LYS 67 0.0054 8.9602 10.2100
1323 CA LYS 67 0.0054 8.9593 10.8400
1363 CA ARG 68 0.0055 8.9779 8.3600
1387 CA ALA 69 0.0088 9.5794 7.9200
1397 CA GLU 70 0.0187 11.3921 12.8500
1412 CA ASN 71 0.0334 14.0829 21.5000
1426 CA SER 72 0.0693 20.6272 22.4400
1427 CA SER 72 0.1069 27.5033 26.5000

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.