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***  lysozyme2  ***

B-factor analysis for ID 2402141427352770497

Overall B-factor prediction

%Bfactors-Wn> Experimental B-factors are nearly constant !

B-factors for all residues

Residue-by-residue B-factor prediction for CA atoms

B-factors are computed based on the first 100 normal modes (B-PREDICT) and are scaled to match the overall B-factors in the submitted model (B-SCALED). A high correlation with the observations is an indicator that the normal modes capture well the overall flexibility features of the model. Comparison of the observed (B-OBS, blue) and the computed (B-SCALED, red) B-factors for all C-alpha atoms is presented below. Differences between B-factors from normal mode analysis and from X-ray crystallographic data may for example indicate regions where the protein flexibility is modified due to external factors such as tight crystall-packing.

  ATOM TYP  RES  RESID   B-PREDICT    B-SCALED      B-OBS
B-SCALEDB-OBS
     5 CA   LYS      1      0.0073      0.0000      0.0000
    27 CA   VAL      2      0.0066      0.0000      0.0000
    43 CA   PHE      3      0.0033      0.0000      0.0000
    63 CA   GLY      4      0.0063      0.0000      0.0000
    70 CA   ARG      5      0.0037      0.0000      0.0000
    94 CA   CYS      6      0.0043      0.0000      0.0000
   104 CA   GLU      7      0.0050      0.0000      0.0000
   119 CA   LEU      8      0.0020      0.0000      0.0000
   138 CA   ALA      9      0.0021      0.0000      0.0000
   148 CA   ALA     10      0.0039      0.0000      0.0000
   158 CA   ALA     11      0.0031      0.0000      0.0000
   168 CA   MET     12      0.0018      0.0000      0.0000
   185 CA   LYS     13      0.0037      0.0000      0.0000
   207 CA   ARG     14      0.0090      0.0000      0.0000
   231 CA   HIS     15      0.0040      0.0000      0.0000
   248 CA   GLY     16      0.0041      0.0000      0.0000
   255 CA   LEU     17      0.0021      0.0000      0.0000
   274 CA   ASP     18      0.0033      0.0000      0.0000
   286 CA   ASN     19      0.0068      0.0000      0.0000
   300 CA   TYR     20      0.0040      0.0000      0.0000
   321 CA   ARG     21      0.0073      0.0000      0.0000
   345 CA   GLY     22      0.0116      0.0000      0.0000
   352 CA   TYR     23      0.0032      0.0000      0.0000
   373 CA   SER     24      0.0036      0.0000      0.0000
   384 CA   LEU     25      0.0020      0.0000      0.0000
   403 CA   GLY     26      0.0019      0.0000      0.0000
   410 CA   ASN     27      0.0018      0.0000      0.0000
   424 CA   TRP     28      0.0013      0.0000      0.0000
   448 CA   VAL     29      0.0015      0.0000      0.0000
   464 CA   CYS     30      0.0019      0.0000      0.0000
   474 CA   ALA     31      0.0016      0.0000      0.0000
   484 CA   ALA     32      0.0017      0.0000      0.0000
   494 CA   LYS     33      0.0028      0.0000      0.0000
   516 CA   PHE     34      0.0043      0.0000      0.0000
   536 CA   GLU     35      0.0029      0.0000      0.0000
   551 CA   SER     36      0.0031      0.0000      0.0000
   562 CA   ASN     37      0.0049      0.0000      0.0000
   576 CA   PHE     38      0.0028      0.0000      0.0000
   596 CA   ASN     39      0.0038      0.0000      0.0000
   610 CA   THR     40      0.0034      0.0000      0.0000
   624 CA   GLN     41      0.0067      0.0000      0.0000
   641 CA   ALA     42      0.0047      0.0000      0.0000
   651 CA   THR     43      0.0071      0.0000      0.0000
   665 CA   ASN     44      0.0099      0.0000      0.0000
   679 CA   ARG     45      0.0133      0.0000      0.0000
   703 CA   ASN     46      0.0136      0.0000      0.0000
   717 CA   THR     47      0.0391      0.0000      0.0000
   731 CA   ASP     48      0.0263      0.0000      0.0000
   743 CA   GLY     49      0.0136      0.0000      0.0000
   750 CA   SER     50      0.0059      0.0000      0.0000
   761 CA   THR     51      0.0041      0.0000      0.0000
   775 CA   ASP     52      0.0034      0.0000      0.0000
   787 CA   TYR     53      0.0026      0.0000      0.0000
   808 CA   GLY     54      0.0022      0.0000      0.0000
   815 CA   ILE     55      0.0018      0.0000      0.0000
   834 CA   LEU     56      0.0015      0.0000      0.0000
   853 CA   GLN     57      0.0024      0.0000      0.0000
   870 CA   ILE     58      0.0018      0.0000      0.0000
   889 CA   ASN     59      0.0029      0.0000      0.0000
   903 CA   SER     60      0.0025      0.0000      0.0000
   914 CA   ARG     61      0.0051      0.0000      0.0000
   938 CA   TRP     62      0.0049      0.0000      0.0000
   962 CA   TRP     63      0.0025      0.0000      0.0000
   986 CA   CYS     64      0.0023      0.0000      0.0000
   996 CA   ASN     65      0.0047      0.0000      0.0000
  1010 CA   ASP     66      0.0057      0.0000      0.0000
  1022 CA   GLY     67      0.0283      0.0000      0.0000
  1029 CA   ARG     68      0.0182      0.0000      0.0000
  1053 CA   THR     69      0.0080      0.0000      0.0000
  1066 CA   PRO     70      0.0230      0.0000      0.0000
  1081 CA   GLY     71      0.0172      0.0000      0.0000
  1088 CA   SER     72      0.0071      0.0000      0.0000
  1099 CA   ARG     73      0.0119      0.0000      0.0000
  1123 CA   ASN     74      0.0051      0.0000      0.0000
  1137 CA   LEU     75      0.0060      0.0000      0.0000
  1156 CA   CYS     76      0.0039      0.0000      0.0000
  1166 CA   ASN     77      0.0105      0.0000      0.0000
  1180 CA   ILE     78      0.0046      0.0000      0.0000
  1198 CA   PRO     79      0.0064      0.0000      0.0000
  1213 CA   CYS     80      0.0028      0.0000      0.0000
  1223 CA   SER     81      0.0071      0.0000      0.0000
  1234 CA   ALA     82      0.0051      0.0000      0.0000
  1244 CA   LEU     83      0.0025      0.0000      0.0000
  1263 CA   LEU     84      0.0042      0.0000      0.0000
  1282 CA   SER     85      0.0051      0.0000      0.0000
  1293 CA   SER     86      0.0070      0.0000      0.0000
  1304 CA   ASP     87      0.0076      0.0000      0.0000
  1316 CA   ILE     88      0.0028      0.0000      0.0000
  1335 CA   THR     89      0.0047      0.0000      0.0000
  1349 CA   ALA     90      0.0033      0.0000      0.0000
  1359 CA   SER     91      0.0020      0.0000      0.0000
  1370 CA   VAL     92      0.0022      0.0000      0.0000
  1386 CA   ASN     93      0.0034      0.0000      0.0000
  1400 CA   CYS     94      0.0023      0.0000      0.0000
  1410 CA   ALA     95      0.0019      0.0000      0.0000
  1420 CA   LYS     96      0.0028      0.0000      0.0000
  1442 CA   LYS     97      0.0040      0.0000      0.0000
  1464 CA   ILE     98      0.0025      0.0000      0.0000
  1483 CA   VAL     99      0.0030      0.0000      0.0000
  1499 CA   SER    100      0.0071      0.0000      0.0000
  1510 CA   ASP    101      0.0124      0.0000      0.0000
  1522 CA   GLY    102      0.0338      0.0000      0.0000
  1529 CA   ASN    103      0.0193      0.0000      0.0000
  1543 CA   GLY    104      0.0053      0.0000      0.0000
  1550 CA   MET    105      0.0028      0.0000      0.0000
  1567 CA   ASN    106      0.0064      0.0000      0.0000
  1581 CA   ALA    107      0.0052      0.0000      0.0000
  1591 CA   TRP    108      0.0033      0.0000      0.0000
  1615 CA   VAL    109      0.0076      0.0000      0.0000
  1631 CA   ALA    110      0.0052      0.0000      0.0000
  1641 CA   TRP    111      0.0033      0.0000      0.0000
  1665 CA   ARG    112      0.0067      0.0000      0.0000
  1689 CA   ASN    113      0.0110      0.0000      0.0000
  1703 CA   ARG    114      0.0081      0.0000      0.0000
  1727 CA   CYS    115      0.0045      0.0000      0.0000
  1737 CA   LYS    116      0.0086      0.0000      0.0000
  1759 CA   GLY    117      0.0420      0.0000      0.0000
  1766 CA   THR    118      0.0182      0.0000      0.0000
  1780 CA   ASP    119      0.0237      0.0000      0.0000
  1792 CA   VAL    120      0.0044      0.0000      0.0000
  1808 CA   GLN    121      0.0068      0.0000      0.0000
  1825 CA   ALA    122      0.0079      0.0000      0.0000
  1835 CA   TRP    123      0.0029      0.0000      0.0000
  1859 CA   ILE    124      0.0035      0.0000      0.0000
  1878 CA   ARG    125      0.0135      0.0000      0.0000
  1902 CA   GLY    126      0.0281      0.0000      0.0000
  1909 CA   CYS    127      0.0100      0.0000      0.0000
  1919 CA   ARG    128      0.0341      0.0000      0.0000
  1943 CA   LEU    129      0.0163      0.0000      0.0000

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.