Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APU *

CA strain for 240110225702578652

--- normal mode 8 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
GLN 1 ILE 2 0.0000

ILE 2 PRO 3 -0.0114

PRO 3 LEU 4 0.0000

LEU 4 CYS 5 -0.0028

CYS 5 ALA 6 -0.0003

ALA 6 ASN 7 0.0047

ASN 7 LEU 8 0.0001

LEU 8 VAL 9 -0.0021

VAL 9 PRO 10 0.0003

PRO 10 VAL 11 -0.0013

VAL 11 PRO 12 0.0001

PRO 12 ILE 13 -0.0079

ILE 13 THR 14 -0.0003

THR 14 ASN 15 0.0033

ASN 15 ALA 16 0.0000

ALA 16 THR 17 0.0053

THR 17 LEU 18 0.0003

LEU 18 ASP 19 0.0126

ASP 19 ARG 20 0.0000

ARG 20 ILE 21 -0.0025

ILE 21 THR 22 0.0001

THR 22 GLY 23 -0.0878

GLY 23 LYS 24 -0.0002

LYS 24 TRP 25 0.0089

TRP 25 PHE 26 0.0003

PHE 26 TYR 27 0.0163

TYR 27 ILE 28 -0.0000

ILE 28 ALA 29 0.0222

ALA 29 SER 30 0.0000

SER 30 ALA 31 0.0351

ALA 31 PHE 32 -0.0000

PHE 32 ARG 33 0.0215

ARG 33 ASN 34 -0.0003

ASN 34 GLU 35 0.0194

GLU 35 GLU 36 -0.0001

GLU 36 TYR 37 -0.0094

TYR 37 ASN 38 -0.0002

ASN 38 LYS 39 0.0092

LYS 39 SER 40 -0.0001

SER 40 VAL 41 -0.0545

VAL 41 GLN 42 0.0001

GLN 42 GLU 43 0.0190

GLU 43 ILE 44 -0.0002

ILE 44 GLN 45 0.0147

GLN 45 ALA 46 0.0001

ALA 46 THR 47 -0.0012

THR 47 PHE 48 -0.0001

PHE 48 PHE 49 -0.0022

PHE 49 TYR 50 -0.0001

TYR 50 PHE 51 -0.0436

PHE 51 THR 52 -0.0002

THR 52 PRO 53 -0.0501

PRO 53 ASN 54 -0.0001

ASN 54 LYS 55 -0.0071

LYS 55 THR 56 -0.0001

THR 56 GLU 57 0.0188

GLU 57 ASP 58 -0.0001

ASP 58 THR 59 -0.0276

THR 59 ILE 60 0.0004

ILE 60 PHE 61 -0.0457

PHE 61 LEU 62 -0.0000

LEU 62 ARG 63 -0.0238

ARG 63 GLU 64 0.0000

GLU 64 TYR 65 0.0037

TYR 65 GLN 66 -0.0001

GLN 66 THR 67 0.0393

THR 67 ARG 68 0.0000

ARG 68 GLN 69 0.0010

GLN 69 ASN 70 -0.0002

ASN 70 GLN 71 0.0246

GLN 71 CYS 72 0.0002

CYS 72 PHE 73 -0.0281

PHE 73 TYR 74 -0.0002

TYR 74 ASN 75 0.0352

ASN 75 SER 76 -0.0006

SER 76 SER 77 -0.0022

SER 77 TYR 78 0.0003

TYR 78 LEU 79 -0.0690

LEU 79 ASN 80 0.0003

ASN 80 VAL 81 0.0674

VAL 81 GLN 82 -0.0000

GLN 82 ARG 83 0.0711

ARG 83 GLU 84 0.0004

GLU 84 ASN 85 -0.0213

ASN 85 GLY 86 -0.0001

GLY 86 THR 87 0.0132

THR 87 VAL 88 0.0000

VAL 88 SER 89 0.0148

SER 89 ARG 90 -0.0001

ARG 90 TYR 91 -0.0014

TYR 91 GLU 92 -0.0001

GLU 92 GLY 93 -0.0659

GLY 93 GLY 94 -0.0003

GLY 94 ARG 95 -0.0253

ARG 95 GLU 96 -0.0001

GLU 96 HIS 97 -0.1297

HIS 97 VAL 98 -0.0002

VAL 98 ALA 99 -0.0477

ALA 99 HIS 100 0.0003

HIS 100 LEU 101 -0.0128

LEU 101 LEU 102 0.0001

LEU 102 PHE 103 -0.0122

PHE 103 LEU 104 0.0005

LEU 104 ARG 105 -0.0017

ARG 105 ASP 106 -0.0003

ASP 106 THR 107 0.0260

THR 107 LYS 108 0.0001

LYS 108 THR 109 -0.0008

THR 109 LEU 110 -0.0001

LEU 110 MET 111 -0.0051

MET 111 PHE 112 0.0000

PHE 112 GLY 113 0.0139

GLY 113 SER 114 0.0001

SER 114 TYR 115 -0.0030

TYR 115 LEU 116 0.0001

LEU 116 ASP 117 -0.0035

ASP 117 ASP 118 -0.0000

ASP 118 GLU 119 0.0001

GLU 119 LYS 120 0.0002

LYS 120 ASN 121 -0.0105

ASN 121 TRP 122 0.0001

TRP 122 GLY 123 0.0109

GLY 123 LEU 124 -0.0001

LEU 124 SER 125 0.0213

SER 125 PHE 126 0.0001

PHE 126 TYR 127 0.0178

TYR 127 ALA 128 -0.0002

ALA 128 ASP 129 0.0057

ASP 129 LYS 130 -0.0000

LYS 130 PRO 131 -0.0458

PRO 131 GLU 132 -0.0001

GLU 132 THR 133 -0.0279

THR 133 THR 134 0.0000

THR 134 LYS 135 0.0103

LYS 135 GLU 136 0.0002

GLU 136 GLN 137 0.0101

GLN 137 LEU 138 -0.0000

LEU 138 GLY 139 0.0080

GLY 139 GLU 140 0.0001

GLU 140 PHE 141 -0.0093

PHE 141 TYR 142 0.0001

TYR 142 GLU 143 -0.0036

GLU 143 ALA 144 -0.0001

ALA 144 LEU 145 0.0018

LEU 145 ASP 146 -0.0000

ASP 146 CYS 147 0.0027

CYS 147 LEU 148 -0.0001

LEU 148 ARG 149 0.0001

ARG 149 ILE 150 -0.0001

ILE 150 PRO 151 -0.0121

PRO 151 ARG 152 0.0003

ARG 152 SER 153 -0.0069

SER 153 ASP 154 -0.0002

ASP 154 VAL 155 0.0245

VAL 155 MET 156 -0.0002

MET 156 TYR 157 0.0300

TYR 157 THR 158 -0.0002

THR 158 ASP 159 0.0376

ASP 159 TRP 160 0.0000

TRP 160 LYS 161 -0.0119

LYS 161 LYS 162 0.0001

LYS 162 ASP 163 0.0556

ASP 163 LYS 164 -0.0000

LYS 164 CYS 165 0.0562

CYS 165 GLU 166 0.0001

GLU 166 PRO 167 0.0274

PRO 167 LEU 168 -0.0000

LEU 168 GLU 169 -0.0220

GLU 169 LYS 170 -0.0000

LYS 170 GLN 171 -0.0115

GLN 171 HIS 172 -0.0004

HIS 172 GLU 173 0.0141

GLU 173 LYS 174 0.0000

LYS 174 GLU 175 0.0137

GLU 175 ILE 2 0.0492

ILE 2 PRO 3 0.0002

PRO 3 LEU 4 0.0063

LEU 4 CYS 5 0.0004

CYS 5 ALA 6 0.0038

ALA 6 ASN 7 0.0001

ASN 7 LEU 8 -0.0030

LEU 8 VAL 9 0.0001

VAL 9 PRO 10 -0.0213

PRO 10 VAL 11 0.0000

VAL 11 PRO 12 -0.0067

PRO 12 ILE 13 -0.0002

ILE 13 THR 14 0.0060

THR 14 ASN 15 -0.0001

ASN 15 ALA 16 0.0067

ALA 16 THR 17 -0.0003

THR 17 LEU 18 0.0068

LEU 18 ASP 19 -0.0000

ASP 19 ARG 20 0.0405

ARG 20 ILE 21 -0.0002

ILE 21 THR 22 0.0116

THR 22 GLY 23 -0.0004

GLY 23 LYS 24 -0.0306

LYS 24 TRP 25 -0.0001

TRP 25 PHE 26 -0.0001

PHE 26 TYR 27 -0.0003

TYR 27 ILE 28 0.0206

ILE 28 ALA 29 -0.0001

ALA 29 SER 30 -0.0027

SER 30 ALA 31 -0.0001

ALA 31 PHE 32 0.0011

PHE 32 ARG 33 -0.0003

ARG 33 ASN 34 -0.0623

ASN 34 GLU 35 0.0005

GLU 35 GLU 36 -0.0044

GLU 36 TYR 37 0.0002

TYR 37 ASN 38 -0.0899

ASN 38 LYS 39 0.0000

LYS 39 SER 40 0.0143

SER 40 VAL 41 -0.0002

VAL 41 GLN 42 -0.0173

GLN 42 GLU 43 0.0005

GLU 43 ILE 44 -0.0363

ILE 44 GLN 45 -0.0000

GLN 45 ALA 46 -0.0105

ALA 46 THR 47 0.0001

THR 47 PHE 48 -0.0053

PHE 48 PHE 49 -0.0001

PHE 49 TYR 50 -0.0072

TYR 50 PHE 51 -0.0003

PHE 51 THR 52 0.0049

THR 52 PRO 53 -0.0001

PRO 53 ASN 54 0.0154

ASN 54 LYS 55 0.0002

LYS 55 THR 56 -0.0172

THR 56 GLU 57 0.0002

GLU 57 ASP 58 -0.0317

ASP 58 THR 59 0.0001

THR 59 ILE 60 -0.0163

ILE 60 PHE 61 0.0001

PHE 61 LEU 62 0.0299

LEU 62 ARG 63 -0.0003

ARG 63 GLU 64 0.0116

GLU 64 TYR 65 0.0001

TYR 65 GLN 66 0.0270

GLN 66 THR 67 -0.0002

THR 67 ARG 68 -0.0181

ARG 68 GLN 69 0.0001

GLN 69 ASN 70 -0.0158

ASN 70 GLN 71 -0.0000

GLN 71 CYS 72 0.0843

CYS 72 PHE 73 -0.0002

PHE 73 TYR 74 0.0622

TYR 74 ASN 75 0.0001

ASN 75 SER 76 0.0342

SER 76 SER 77 -0.0005

SER 77 TYR 78 0.0037

TYR 78 LEU 79 0.0001

LEU 79 ASN 80 -0.0018

ASN 80 VAL 81 0.0002

VAL 81 GLN 82 -0.0165

GLN 82 ARG 83 -0.0001

ARG 83 GLU 84 -0.0245

GLU 84 ASN 85 0.0001

ASN 85 GLY 86 0.0026

GLY 86 THR 87 -0.0000

THR 87 VAL 88 0.0107

VAL 88 SER 89 0.0001

SER 89 ARG 90 0.0797

ARG 90 TYR 91 -0.0005

TYR 91 GLU 92 0.1266

GLU 92 GLY 93 0.0001

GLY 93 GLY 94 -0.1786

GLY 94 ARG 95 0.0003

ARG 95 GLU 96 0.1049

GLU 96 HIS 97 -0.0003

HIS 97 VAL 98 0.0597

VAL 98 ALA 99 0.0001

ALA 99 HIS 100 -0.0167

HIS 100 LEU 101 -0.0001

LEU 101 LEU 102 -0.0123

LEU 102 PHE 103 -0.0001

PHE 103 LEU 104 0.0048

LEU 104 ARG 105 -0.0001

ARG 105 ASP 106 -0.0117

ASP 106 THR 107 -0.0004

THR 107 LYS 108 -0.0188

LYS 108 THR 109 0.0001

THR 109 LEU 110 -0.0024

LEU 110 MET 111 0.0001

MET 111 PHE 112 -0.0232

PHE 112 GLY 113 0.0003

GLY 113 SER 114 0.0142

SER 114 TYR 115 -0.0004

TYR 115 LEU 116 -0.0011

LEU 116 ASP 117 -0.0001

ASP 117 ASP 118 0.0044

ASP 118 GLU 119 0.0001

GLU 119 LYS 120 -0.0005

LYS 120 ASN 121 0.0004

ASN 121 TRP 122 0.0031

TRP 122 GLY 123 0.0000

GLY 123 LEU 124 0.0183

LEU 124 SER 125 0.0003

SER 125 PHE 126 -0.0138

PHE 126 TYR 127 0.0001

TYR 127 ALA 128 -0.0010

ALA 128 ASP 129 -0.0001

ASP 129 LYS 130 -0.0034

LYS 130 PRO 131 0.0001

PRO 131 GLU 132 0.0148

GLU 132 THR 133 -0.0001

THR 133 THR 134 0.0001

THR 134 LYS 135 0.0000

LYS 135 GLU 136 0.0097

GLU 136 GLN 137 -0.0001

GLN 137 LEU 138 0.0028

LEU 138 GLY 139 -0.0003

GLY 139 GLU 140 -0.0022

GLU 140 PHE 141 0.0002

PHE 141 TYR 142 0.0061

TYR 142 GLU 143 0.0000

GLU 143 ALA 144 -0.0065

ALA 144 LEU 145 -0.0001

LEU 145 ASP 146 0.0043

ASP 146 CYS 147 -0.0001

CYS 147 LEU 148 -0.0093

LEU 148 ARG 149 0.0000

ARG 149 ILE 150 0.0252

ILE 150 PRO 151 -0.0003

PRO 151 ARG 152 0.0061

ARG 152 SER 153 0.0000

SER 153 ASP 154 -0.0306

ASP 154 VAL 155 0.0002

VAL 155 MET 156 0.0428

MET 156 TYR 157 0.0001

TYR 157 THR 158 0.0618

THR 158 ASP 159 0.0002

ASP 159 TRP 160 0.0363

TRP 160 LYS 161 0.0000

LYS 161 LYS 162 -0.0534

LYS 162 ASP 163 -0.0002

ASP 163 LYS 164 0.0162

LYS 164 CYS 165 -0.0004

CYS 165 GLU 166 -0.0481

GLU 166 PRO 167 -0.0000

PRO 167 LEU 168 0.0544

LEU 168 GLU 169 -0.0002

GLU 169 LYS 170 -0.0214

LYS 170 GLN 171 -0.0002

GLN 171 HIS 172 0.0007

HIS 172 GLU 173 -0.0003

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** TRANSPORT PROTEIN 21-OCT-10 3APU ***

CA strain for 240110225702578652

--- normal mode 8 ---

Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APU *