This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ASN 1
ALA 2
0.0337
ALA 2
PRO 3
-0.0564
PRO 3
VAL 4
-0.0445
VAL 4
PHE 5
0.2931
PHE 5
THR 6
-0.1433
THR 6
GLN 7
-0.1023
GLN 7
PRO 8
0.0624
PRO 8
GLU 9
0.1183
GLU 9
TYR 10
-0.0292
TYR 10
HIS 11
0.0178
HIS 11
ILE 12
0.0678
ILE 12
SER 13
-0.0339
SER 13
VAL 14
0.0024
VAL 14
LYS 15
-0.0173
LYS 15
GLU 16
0.0430
GLU 16
ASN 17
0.0037
ASN 17
LEU 18
-0.0043
LEU 18
PRO 19
-0.0224
PRO 19
VAL 20
-0.0750
VAL 20
GLY 21
-0.1146
GLY 21
THR 22
-0.0089
THR 22
ARG 23
0.0591
ARG 23
LEU 24
-0.1244
LEU 24
LEU 25
0.0427
LEU 25
THR 26
-0.0762
THR 26
ILE 27
-0.0809
ILE 27
LYS 28
-0.1287
LYS 28
ALA 29
-0.3298
ALA 29
THR 30
-0.0171
THR 30
ASP 31
-0.2128
ASP 31
PRO 32
0.0063
PRO 32
ASP 33
0.0247
ASP 33
GLU 34
0.0248
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.