This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ASN 1
ALA 2
0.0037
ALA 2
PRO 3
0.0046
PRO 3
VAL 4
-0.0144
VAL 4
PHE 5
0.0038
PHE 5
THR 6
-0.0124
THR 6
GLN 7
-0.0097
GLN 7
PRO 8
0.0072
PRO 8
GLU 9
0.0045
GLU 9
TYR 10
0.0449
TYR 10
HIS 11
-0.0616
HIS 11
ILE 12
-0.0220
ILE 12
SER 13
-0.0110
SER 13
VAL 14
-0.0208
VAL 14
LYS 15
-0.0004
LYS 15
GLU 16
-0.0064
GLU 16
ASN 17
0.0051
ASN 17
LEU 18
-0.0010
LEU 18
PRO 19
0.0082
PRO 19
VAL 20
0.0032
VAL 20
GLY 21
0.0054
GLY 21
THR 22
-0.0008
THR 22
ARG 23
0.0399
ARG 23
LEU 24
-0.0232
LEU 24
LEU 25
0.0101
LEU 25
THR 26
0.0802
THR 26
ILE 27
-0.0376
ILE 27
LYS 28
0.0256
LYS 28
ALA 29
-0.0108
ALA 29
THR 30
0.0210
THR 30
ASP 31
-0.0114
ASP 31
PRO 32
0.0064
PRO 32
ASP 33
-0.0072
ASP 33
GLU 34
0.0007
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.