This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ASN 1
ALA 2
-0.0005
ALA 2
PRO 3
0.0168
PRO 3
VAL 4
-0.0051
VAL 4
PHE 5
-0.0311
PHE 5
THR 6
0.0128
THR 6
GLN 7
0.0164
GLN 7
PRO 8
-0.0207
PRO 8
GLU 9
-0.0410
GLU 9
TYR 10
0.0275
TYR 10
HIS 11
-0.0493
HIS 11
ILE 12
-0.0721
ILE 12
SER 13
0.0040
SER 13
VAL 14
-0.1216
VAL 14
LYS 15
0.0315
LYS 15
GLU 16
0.0131
GLU 16
ASN 17
0.0086
ASN 17
LEU 18
-0.0010
LEU 18
PRO 19
-0.0047
PRO 19
VAL 20
-0.0235
VAL 20
GLY 21
-0.1142
GLY 21
THR 22
-0.0024
THR 22
ARG 23
-0.0169
ARG 23
LEU 24
-0.0690
LEU 24
LEU 25
0.0284
LEU 25
THR 26
0.0972
THR 26
ILE 27
-0.0453
ILE 27
LYS 28
0.0822
LYS 28
ALA 29
0.0294
ALA 29
THR 30
0.0138
THR 30
ASP 31
0.0350
ASP 31
PRO 32
-0.0042
PRO 32
ASP 33
-0.0054
ASP 33
GLU 34
-0.0013
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.