This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
ASN 1
ALA 2
-0.0015
ALA 2
PRO 3
0.0282
PRO 3
VAL 4
0.0006
VAL 4
PHE 5
-0.2190
PHE 5
THR 6
0.0754
THR 6
GLN 7
-0.0556
GLN 7
PRO 8
0.0328
PRO 8
GLU 9
-0.0516
GLU 9
TYR 10
0.0179
TYR 10
HIS 11
-0.0322
HIS 11
ILE 12
-0.0020
ILE 12
SER 13
-0.0017
SER 13
VAL 14
-0.0089
VAL 14
LYS 15
-0.0138
LYS 15
GLU 16
0.0159
GLU 16
ASN 17
-0.0158
ASN 17
LEU 18
0.0261
LEU 18
PRO 19
-0.0688
PRO 19
VAL 20
-0.0106
VAL 20
GLY 21
0.0081
GLY 21
THR 22
-0.0098
THR 22
ARG 23
0.0831
ARG 23
LEU 24
-0.0448
LEU 24
LEU 25
0.0366
LEU 25
THR 26
0.0183
THR 26
ILE 27
0.2036
ILE 27
LYS 28
0.1511
LYS 28
ALA 29
0.1625
ALA 29
THR 30
0.1872
THR 30
ASP 31
0.0093
ASP 31
PRO 32
0.0419
PRO 32
ASP 33
-0.0408
ASP 33
GLU 34
-0.0190
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.