CNRS Nantes University US2B US2B
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***  HIV protease  ***

CA strain for 2402051700431573247

---  normal mode 11  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0048
GLN 2ILE 3 -0.0830
ILE 3THR 4 0.0579
THR 4LEU 5 0.0191
LEU 5TRP 6 0.1137
TRP 6GLN 7 -0.0863
GLN 7ARG 8 -0.0730
ARG 8PRO 9 -0.0080
PRO 9LEU 10 -0.0676
LEU 10VAL 11 0.0667
VAL 11THR 12 -0.0438
THR 12ILE 13 0.0109
ILE 13LYS 14 0.0048
LYS 14ILE 15 -0.0157
ILE 15GLY 16 -0.0088
GLY 16GLY 17 -0.0232
GLY 17GLN 18 0.0040
GLN 18LEU 19 -0.0225
LEU 19LYS 20 0.0169
LYS 20GLU 21 -0.0945
GLU 21ALA 22 0.0373
ALA 22LEU 23 0.0423
LEU 23LEU 24 0.0294
LEU 24ASP 25 -0.0971
ASP 25THR 26 0.1433
THR 26GLY 27 0.1701
GLY 27ALA 28 0.1365
ALA 28ASP 29 -0.0460
ASP 29ASP 30 0.0807
ASP 30THR 31 0.0009
THR 31VAL 32 -0.0302
VAL 32LEU 33 0.0275
LEU 33GLU 34 0.0187
GLU 34GLU 35 -0.0485
GLU 35MET 36 0.0135
MET 36SER 37 0.0064
SER 37LEU 38 0.0132
LEU 38PRO 39 -0.0083
PRO 39GLY 40 -0.0171
GLY 40ARG 41 -0.0136
ARG 41TRP 42 -0.0064
TRP 42LYS 43 -0.0240
LYS 43PRO 44 0.0317
PRO 44LYS 45 0.0092
LYS 45MET 46 0.0159
MET 46ILE 47 -0.0294
ILE 47GLY 48 -0.3096
GLY 48GLY 49 -0.0970
GLY 49ILE 50 -0.0860
ILE 50GLY 51 0.0384
GLY 51GLY 52 0.0524
GLY 52PHE 53 0.1692
PHE 53ILE 54 -0.0035
ILE 54LYS 55 0.1710
LYS 55VAL 56 0.0211
VAL 56ARG 57 0.0000
ARG 57GLN 58 -0.0079
GLN 58TYR 59 -0.0210
TYR 59ASP 60 -0.0114
ASP 60GLN 61 -0.0040
GLN 61ILE 62 0.0034
ILE 62LEU 63 -0.0117
LEU 63ILE 64 0.0035
ILE 64GLU 65 0.0012
GLU 65ILE 66 -0.0056
ILE 66CYS 67 -0.0337
CYS 67GLY 68 0.0285
GLY 68HIS 69 -0.0714
HIS 69LYS 70 0.0903
LYS 70ALA 71 0.0146
ALA 71ILE 72 0.0214
ILE 72GLY 73 0.0096
GLY 73THR 74 -0.0187
THR 74VAL 75 -0.0187
VAL 75LEU 76 -0.0567
LEU 76VAL 77 0.0354
VAL 77GLY 78 -0.0045
GLY 78PRO 79 0.0036
PRO 79THR 80 -0.0360
THR 80PRO 81 -0.0310
PRO 81VAL 82 -0.0300
VAL 82ASN 83 -0.0162
ASN 83ILE 84 0.0448
ILE 84ILE 85 -0.0018
ILE 85GLY 86 -0.0246
GLY 86ARG 87 -0.0086
ARG 87ASN 88 0.0427
ASN 88LEU 89 -0.0242
LEU 89LEU 90 0.0185
LEU 90THR 91 -0.0057
THR 91GLN 92 0.0158
GLN 92ILE 93 0.0143
ILE 93GLY 94 -0.0777
GLY 94CYS 95 0.1102
CYS 95THR 96 -0.1974
THR 96LEU 97 -0.0575
LEU 97ASN 98 0.1554
ASN 98PHE 99 0.0247

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.