CNRS Nantes University US2B US2B
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***  HIV protease  ***

CA strain for 2402051700431573247

---  normal mode 8  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 -0.1741
GLN 2ILE 3 -0.0472
ILE 3THR 4 0.0790
THR 4LEU 5 0.0727
LEU 5TRP 6 -0.0432
TRP 6GLN 7 -0.0004
GLN 7ARG 8 -0.0065
ARG 8PRO 9 0.0018
PRO 9LEU 10 -0.0490
LEU 10VAL 11 0.0296
VAL 11THR 12 -0.0283
THR 12ILE 13 0.0028
ILE 13LYS 14 -0.0033
LYS 14ILE 15 -0.0061
ILE 15GLY 16 -0.0013
GLY 16GLY 17 0.0066
GLY 17GLN 18 -0.0045
GLN 18LEU 19 -0.0059
LEU 19LYS 20 -0.0030
LYS 20GLU 21 -0.0297
GLU 21ALA 22 0.0193
ALA 22LEU 23 0.0201
LEU 23LEU 24 -0.0101
LEU 24ASP 25 -0.0056
ASP 25THR 26 0.0317
THR 26GLY 27 0.0209
GLY 27ALA 28 0.0444
ALA 28ASP 29 -0.0060
ASP 29ASP 30 0.0203
ASP 30THR 31 -0.0030
THR 31VAL 32 0.0057
VAL 32LEU 33 -0.0112
LEU 33GLU 34 0.0083
GLU 34GLU 35 0.0051
GLU 35MET 36 -0.0164
MET 36SER 37 -0.0112
SER 37LEU 38 -0.0021
LEU 38PRO 39 -0.0092
PRO 39GLY 40 -0.0031
GLY 40ARG 41 0.0087
ARG 41TRP 42 -0.0041
TRP 42LYS 43 0.0043
LYS 43PRO 44 0.0321
PRO 44LYS 45 -0.0010
LYS 45MET 46 0.1488
MET 46ILE 47 -0.1304
ILE 47GLY 48 -0.0604
GLY 48GLY 49 -0.0099
GLY 49ILE 50 -0.0092
ILE 50GLY 51 0.0070
GLY 51GLY 52 0.0789
GLY 52PHE 53 0.3305
PHE 53ILE 54 -0.0756
ILE 54LYS 55 -0.0856
LYS 55VAL 56 0.0104
VAL 56ARG 57 -0.0294
ARG 57GLN 58 0.0070
GLN 58TYR 59 0.0106
TYR 59ASP 60 -0.0078
ASP 60GLN 61 0.0120
GLN 61ILE 62 -0.0119
ILE 62LEU 63 0.0037
LEU 63ILE 64 -0.0037
ILE 64GLU 65 -0.0103
GLU 65ILE 66 0.0037
ILE 66CYS 67 -0.0329
CYS 67GLY 68 -0.0215
GLY 68HIS 69 -0.0006
HIS 69LYS 70 0.0046
LYS 70ALA 71 -0.0054
ALA 71ILE 72 0.0126
ILE 72GLY 73 -0.0042
GLY 73THR 74 -0.0087
THR 74VAL 75 -0.0020
VAL 75LEU 76 -0.0252
LEU 76VAL 77 0.0126
VAL 77GLY 78 -0.0184
GLY 78PRO 79 0.0074
PRO 79THR 80 0.0265
THR 80PRO 81 -0.0219
PRO 81VAL 82 -0.0190
VAL 82ASN 83 0.0001
ASN 83ILE 84 0.0157
ILE 84ILE 85 0.0040
ILE 85GLY 86 -0.0085
GLY 86ARG 87 0.0059
ARG 87ASN 88 0.0093
ASN 88LEU 89 -0.0171
LEU 89LEU 90 0.0310
LEU 90THR 91 -0.0148
THR 91GLN 92 0.0153
GLN 92ILE 93 0.0014
ILE 93GLY 94 0.0525
GLY 94CYS 95 -0.0431
CYS 95THR 96 0.0276
THR 96LEU 97 0.0666
LEU 97ASN 98 -0.0168
ASN 98PHE 99 -0.0005

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.