CNRS Nantes University US2B US2B
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***  HIV protease  ***

CA strain for 2402051700431573247

---  normal mode 9  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
PRO 1GLN 2 0.0711
GLN 2ILE 3 0.0729
ILE 3THR 4 -0.1160
THR 4LEU 5 -0.1017
LEU 5TRP 6 0.1007
TRP 6GLN 7 -0.0683
GLN 7ARG 8 0.0969
ARG 8PRO 9 0.0249
PRO 9LEU 10 0.0204
LEU 10VAL 11 -0.0999
VAL 11THR 12 -0.0221
THR 12ILE 13 -0.0150
ILE 13LYS 14 -0.0216
LYS 14ILE 15 0.0195
ILE 15GLY 16 -0.0222
GLY 16GLY 17 -0.0115
GLY 17GLN 18 0.0100
GLN 18LEU 19 -0.0047
LEU 19LYS 20 0.0018
LYS 20GLU 21 -0.0827
GLU 21ALA 22 0.0074
ALA 22LEU 23 0.0164
LEU 23LEU 24 -0.0637
LEU 24ASP 25 0.0573
ASP 25THR 26 -0.2111
THR 26GLY 27 -0.1040
GLY 27ALA 28 -0.0626
ALA 28ASP 29 0.0384
ASP 29ASP 30 -0.0041
ASP 30THR 31 0.0206
THR 31VAL 32 -0.0583
VAL 32LEU 33 -0.0450
LEU 33GLU 34 0.0226
GLU 34GLU 35 -0.0707
GLU 35MET 36 0.0613
MET 36SER 37 -0.0238
SER 37LEU 38 0.0124
LEU 38PRO 39 -0.0170
PRO 39GLY 40 -0.0198
GLY 40ARG 41 -0.0110
ARG 41TRP 42 -0.0140
TRP 42LYS 43 -0.0267
LYS 43PRO 44 0.0619
PRO 44LYS 45 -0.0392
LYS 45MET 46 0.0423
MET 46ILE 47 -0.0837
ILE 47GLY 48 -0.3097
GLY 48GLY 49 -0.0767
GLY 49ILE 50 -0.0722
ILE 50GLY 51 0.0438
GLY 51GLY 52 0.0380
GLY 52PHE 53 0.1504
PHE 53ILE 54 0.0396
ILE 54LYS 55 0.2551
LYS 55VAL 56 0.0152
VAL 56ARG 57 0.0185
ARG 57GLN 58 0.0172
GLN 58TYR 59 -0.0027
TYR 59ASP 60 0.0003
ASP 60GLN 61 0.0078
GLN 61ILE 62 -0.0265
ILE 62LEU 63 0.0103
LEU 63ILE 64 -0.0140
ILE 64GLU 65 -0.0116
GLU 65ILE 66 0.0014
ILE 66CYS 67 0.0137
CYS 67GLY 68 -0.0220
GLY 68HIS 69 0.0387
HIS 69LYS 70 -0.0534
LYS 70ALA 71 -0.0237
ALA 71ILE 72 0.0122
ILE 72GLY 73 -0.0347
GLY 73THR 74 -0.0903
THR 74VAL 75 0.0134
VAL 75LEU 76 -0.0615
LEU 76VAL 77 -0.0178
VAL 77GLY 78 0.0271
GLY 78PRO 79 -0.0174
PRO 79THR 80 -0.0960
THR 80PRO 81 0.0279
PRO 81VAL 82 -0.0145
VAL 82ASN 83 0.0192
ASN 83ILE 84 -0.0180
ILE 84ILE 85 -0.0595
ILE 85GLY 86 -0.0028
GLY 86ARG 87 -0.0192
ARG 87ASN 88 0.1088
ASN 88LEU 89 -0.0457
LEU 89LEU 90 0.0544
LEU 90THR 91 0.0325
THR 91GLN 92 0.0067
GLN 92ILE 93 -0.0137
ILE 93GLY 94 0.1245
GLY 94CYS 95 -0.1026
CYS 95THR 96 0.1267
THR 96LEU 97 0.0858
LEU 97ASN 98 -0.0768
ASN 98PHE 99 0.0085

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.