This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
PHE 1
ALA 2
-0.0394
ALA 2
SER 3
0.0253
SER 3
LYS 4
-0.0588
LYS 4
GLU 5
0.0375
GLU 5
TYR 6
0.0018
TYR 6
GLY 7
0.0097
GLY 7
VAL 8
-0.0168
VAL 8
THR 9
0.0271
THR 9
ILE 10
-0.0409
ILE 10
GLY 11
0.0220
GLY 11
GLU 12
-0.0301
GLU 12
SER 13
0.0044
SER 13
ARG 14
0.0108
ARG 14
ILE 15
0.0001
ILE 15
ILE 16
-0.0137
ILE 16
TYR 17
-0.0010
TYR 17
PRO 18
0.0252
PRO 18
LEU 19
-0.0148
LEU 19
ASP 20
0.0012
ASP 20
ALA 21
-0.0160
ALA 21
ALA 22
0.0024
ALA 22
GLY 23
0.0037
GLY 23
VAL 24
0.0066
VAL 24
MET 25
-0.0078
MET 25
VAL 26
-0.0116
VAL 26
SER 27
-0.0048
SER 27
VAL 28
-0.0212
VAL 28
LYS 29
0.0188
LYS 29
ASN 30
-0.0456
ASN 30
THR 31
-0.0015
THR 31
GLN 32
-0.0197
GLN 32
ASP 33
0.0036
ASP 33
TYR 34
0.0062
TYR 34
PRO 35
-0.0286
PRO 35
VAL 36
0.0359
VAL 36
LEU 37
-0.0628
LEU 37
ILE 38
0.0157
ILE 38
GLN 39
0.0670
GLN 39
SER 40
0.0031
SER 40
ARG 41
0.0506
ARG 41
ILE 42
-0.0053
ILE 42
TYR 43
0.0129
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.