This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
PHE 1
ALA 2
-0.0579
ALA 2
SER 3
0.0379
SER 3
LYS 4
-0.0640
LYS 4
GLU 5
0.0259
GLU 5
TYR 6
-0.0205
TYR 6
GLY 7
0.0305
GLY 7
VAL 8
-0.0272
VAL 8
THR 9
0.0759
THR 9
ILE 10
-0.0623
ILE 10
GLY 11
0.0526
GLY 11
GLU 12
0.0627
GLU 12
SER 13
-0.0008
SER 13
ARG 14
-0.0150
ARG 14
ILE 15
-0.0385
ILE 15
ILE 16
0.0013
ILE 16
TYR 17
0.0603
TYR 17
PRO 18
-0.0396
PRO 18
LEU 19
0.0333
LEU 19
ASP 20
-0.0088
ASP 20
ALA 21
0.0223
ALA 21
ALA 22
-0.0068
ALA 22
GLY 23
-0.0057
GLY 23
VAL 24
-0.0100
VAL 24
MET 25
0.1333
MET 25
VAL 26
-0.0157
VAL 26
SER 27
0.0622
SER 27
VAL 28
-0.0050
VAL 28
LYS 29
0.0046
LYS 29
ASN 30
0.0156
ASN 30
THR 31
-0.0138
THR 31
GLN 32
0.0173
GLN 32
ASP 33
0.0026
ASP 33
TYR 34
0.0014
TYR 34
PRO 35
-0.0053
PRO 35
VAL 36
0.0165
VAL 36
LEU 37
-0.0251
LEU 37
ILE 38
-0.0066
ILE 38
GLN 39
0.0168
GLN 39
SER 40
-0.0154
SER 40
ARG 41
0.0350
ARG 41
ILE 42
-0.0167
ILE 42
TYR 43
-0.0675
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.