This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
PHE 1
ALA 2
-0.0286
ALA 2
SER 3
0.0233
SER 3
LYS 4
-0.0388
LYS 4
GLU 5
0.0314
GLU 5
TYR 6
0.0133
TYR 6
GLY 7
-0.0081
GLY 7
VAL 8
0.0006
VAL 8
THR 9
-0.0228
THR 9
ILE 10
-0.0064
ILE 10
GLY 11
-0.0043
GLY 11
GLU 12
-0.0334
GLU 12
SER 13
0.0008
SER 13
ARG 14
-0.0002
ARG 14
ILE 15
0.0110
ILE 15
ILE 16
0.0212
ILE 16
TYR 17
-0.0240
TYR 17
PRO 18
0.0019
PRO 18
LEU 19
-0.0073
LEU 19
ASP 20
0.0001
ASP 20
ALA 21
0.0022
ALA 21
ALA 22
-0.0001
ALA 22
GLY 23
0.0001
GLY 23
VAL 24
0.0001
VAL 24
MET 25
-0.0195
MET 25
VAL 26
0.0173
VAL 26
SER 27
-0.0133
SER 27
VAL 28
0.0226
VAL 28
LYS 29
0.0039
LYS 29
ASN 30
0.0255
ASN 30
THR 31
0.0233
THR 31
GLN 32
-0.0324
GLN 32
ASP 33
0.0069
ASP 33
TYR 34
-0.0024
TYR 34
PRO 35
-0.0122
PRO 35
VAL 36
-0.0158
VAL 36
LEU 37
-0.0300
LEU 37
ILE 38
0.0044
ILE 38
GLN 39
0.0282
GLN 39
SER 40
0.0198
SER 40
ARG 41
-0.0058
ARG 41
ILE 42
0.0250
ILE 42
TYR 43
-0.0077
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.