This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
PHE 1
ALA 2
-0.0120
ALA 2
SER 3
0.0292
SER 3
LYS 4
-0.1176
LYS 4
GLU 5
0.0106
GLU 5
TYR 6
0.0074
TYR 6
GLY 7
0.0698
GLY 7
VAL 8
0.0799
VAL 8
THR 9
-0.0173
THR 9
ILE 10
0.0702
ILE 10
GLY 11
-0.0244
GLY 11
GLU 12
0.0141
GLU 12
SER 13
-0.0095
SER 13
ARG 14
0.0099
ARG 14
ILE 15
0.0063
ILE 15
ILE 16
-0.0145
ILE 16
TYR 17
0.0037
TYR 17
PRO 18
0.0128
PRO 18
LEU 19
-0.0047
LEU 19
ASP 20
0.0012
ASP 20
ALA 21
-0.0119
ALA 21
ALA 22
0.0044
ALA 22
GLY 23
-0.0023
GLY 23
VAL 24
0.0004
VAL 24
MET 25
-0.0323
MET 25
VAL 26
0.0074
VAL 26
SER 27
-0.0364
SER 27
VAL 28
-0.0144
VAL 28
LYS 29
-0.0412
LYS 29
ASN 30
-0.0562
ASN 30
THR 31
-0.0007
THR 31
GLN 32
-0.0083
GLN 32
ASP 33
0.0143
ASP 33
TYR 34
0.0086
TYR 34
PRO 35
0.0231
PRO 35
VAL 36
-0.0150
VAL 36
LEU 37
0.0572
LEU 37
ILE 38
0.0007
ILE 38
GLN 39
-0.0359
GLN 39
SER 40
-0.0058
SER 40
ARG 41
-0.0207
ARG 41
ILE 42
-0.0216
ILE 42
TYR 43
0.0035
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.