This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
LYS 2
-0.2301
LYS 2
PHE 3
-0.1581
PHE 3
ALA 4
-0.0429
ALA 4
CYS 5
0.0371
CYS 5
PRO 6
-0.0467
PRO 6
GLU 7
0.0420
GLU 7
CYS 8
0.2027
CYS 8
PRO 9
-0.0505
PRO 9
LYS 10
0.0082
LYS 10
ARG 11
-0.0014
ARG 11
PHE 12
0.0464
PHE 12
MET 13
-0.0490
MET 13
ARG 14
0.0594
ARG 14
SER 15
0.0644
SER 15
ASP 16
-0.0369
ASP 16
HIS 17
0.0443
HIS 17
LEU 18
0.0063
LEU 18
SER 19
0.0699
SER 19
LYS 20
-0.0136
LYS 20
HIS 21
0.0810
HIS 21
ILE 22
-0.0049
ILE 22
LYS 23
0.0701
LYS 23
THR 24
0.0170
THR 24
HIS 25
0.1000
HIS 25
GLN 26
-0.2354
GLN 26
ASN 27
0.0564
ASN 27
LYS 28
-0.0777
LYS 28
LYS 29
-0.0421
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.