This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
LYS 2
0.1397
LYS 2
PHE 3
0.2241
PHE 3
ALA 4
-0.0585
ALA 4
CYS 5
0.0349
CYS 5
PRO 6
-0.0268
PRO 6
GLU 7
0.0704
GLU 7
CYS 8
0.0435
CYS 8
PRO 9
-0.0221
PRO 9
LYS 10
0.0178
LYS 10
ARG 11
-0.0112
ARG 11
PHE 12
0.0238
PHE 12
MET 13
-0.0454
MET 13
ARG 14
0.0262
ARG 14
SER 15
0.0296
SER 15
ASP 16
0.0084
ASP 16
HIS 17
0.0201
HIS 17
LEU 18
0.0432
LEU 18
SER 19
0.0357
SER 19
LYS 20
-0.0503
LYS 20
HIS 21
0.1139
HIS 21
ILE 22
0.0019
ILE 22
LYS 23
-0.0437
LYS 23
THR 24
0.0846
THR 24
HIS 25
0.0871
HIS 25
GLN 26
-0.2935
GLN 26
ASN 27
0.1796
ASN 27
LYS 28
-0.0408
LYS 28
LYS 29
0.0385
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.