This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
LYS 2
0.1222
LYS 2
PHE 3
0.3889
PHE 3
ALA 4
-0.0811
ALA 4
CYS 5
0.0421
CYS 5
PRO 6
-0.0077
PRO 6
GLU 7
0.0038
GLU 7
CYS 8
0.0704
CYS 8
PRO 9
0.0728
PRO 9
LYS 10
-0.0246
LYS 10
ARG 11
0.0711
ARG 11
PHE 12
-0.0457
PHE 12
MET 13
0.0796
MET 13
ARG 14
0.0061
ARG 14
SER 15
-0.0274
SER 15
ASP 16
0.1226
ASP 16
HIS 17
0.0473
HIS 17
LEU 18
0.0214
LEU 18
SER 19
-0.0460
SER 19
LYS 20
0.0836
LYS 20
HIS 21
-0.0983
HIS 21
ILE 22
0.0079
ILE 22
LYS 23
0.0742
LYS 23
THR 24
-0.0235
THR 24
HIS 25
-0.0298
HIS 25
GLN 26
0.2004
GLN 26
ASN 27
-0.1001
ASN 27
LYS 28
-0.0035
LYS 28
LYS 29
-0.0457
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.