This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
LYS 2
0.1602
LYS 2
PHE 3
0.0576
PHE 3
ALA 4
-0.0002
ALA 4
CYS 5
-0.2743
CYS 5
PRO 6
0.0730
PRO 6
GLU 7
-0.2379
GLU 7
CYS 8
-0.0279
CYS 8
PRO 9
-0.0882
PRO 9
LYS 10
0.0037
LYS 10
ARG 11
-0.0334
ARG 11
PHE 12
-0.0548
PHE 12
MET 13
0.0581
MET 13
ARG 14
0.0118
ARG 14
SER 15
-0.0541
SER 15
ASP 16
0.1134
ASP 16
HIS 17
-0.1060
HIS 17
LEU 18
-0.0644
LEU 18
SER 19
0.0747
SER 19
LYS 20
-0.0345
LYS 20
HIS 21
-0.1439
HIS 21
ILE 22
-0.0133
ILE 22
LYS 23
0.0900
LYS 23
THR 24
-0.1239
THR 24
HIS 25
0.0006
HIS 25
GLN 26
-0.0021
GLN 26
ASN 27
-0.0791
ASN 27
LYS 28
-0.0949
LYS 28
LYS 29
-0.0198
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.