CNRS Nantes University US2B US2B
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***  lysozyme  ***

CA strain for 2402132254172667999

---  normal mode 17  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1VAL 2 0.0142
VAL 2PHE 3 0.0244
PHE 3GLY 4 -0.0009
GLY 4ARG 5 -0.0493
ARG 5CYS 6 -0.0126
CYS 6GLU 7 -0.2584
GLU 7LEU 8 -0.0393
LEU 8ALA 9 0.0394
ALA 9ALA 10 -0.0316
ALA 10ALA 11 -0.0792
ALA 11MET 12 -0.0313
MET 12LYS 13 0.1721
LYS 13ARG 14 0.0112
ARG 14HIS 15 0.0195
HIS 15GLY 16 -0.0270
GLY 16LEU 17 0.0232
LEU 17ASP 18 0.0347
ASP 18ASN 19 -0.0618
ASN 19TYR 20 0.0112
TYR 20ARG 21 -0.0569
ARG 21GLY 22 -0.0144
GLY 22TYR 23 0.0546
TYR 23SER 24 -0.1245
SER 24LEU 25 -0.0169
LEU 25GLY 26 -0.0171
GLY 26ASN 27 0.0119
ASN 27TRP 28 -0.0030
TRP 28VAL 29 -0.0268
VAL 29CYS 30 -0.0265
CYS 30ALA 31 0.0833
ALA 31ALA 32 -0.0487
ALA 32LYS 33 -0.0124
LYS 33PHE 34 -0.0112
PHE 34GLU 35 0.1081
GLU 35SER 36 -0.0526
SER 36ASN 37 0.0579
ASN 37PHE 38 -0.0155
PHE 38ASN 39 0.1093
ASN 39THR 40 0.0509
THR 40GLN 41 -0.0243
GLN 41ALA 42 -0.0464
ALA 42THR 43 0.2090
THR 43ASN 44 0.0344
ASN 44ARG 45 0.1613
ARG 45ASN 46 0.1441
ASN 46THR 47 -0.2057
THR 47ASP 48 -0.0318
ASP 48GLY 49 -0.3613
GLY 49SER 50 0.0754
SER 50THR 51 0.0937
THR 51ASP 52 0.0894
ASP 52TYR 53 -0.0475
TYR 53GLY 54 0.0866
GLY 54ILE 55 0.1360
ILE 55LEU 56 -0.0380
LEU 56GLN 57 0.1344
GLN 57ILE 58 -0.0745
ILE 58ASN 59 0.0910
ASN 59SER 60 -0.0118
SER 60ARG 61 0.0445
ARG 61TRP 62 -0.0109
TRP 62TRP 63 0.0758
TRP 63CYS 64 0.0216
CYS 64ASN 65 -0.0037
ASN 65ASP 66 0.1029
ASP 66GLY 67 -0.1663
GLY 67ARG 68 0.0677
ARG 68THR 69 0.1007
THR 69PRO 70 -0.1009
PRO 70GLY 71 0.1332
GLY 71SER 72 -0.1521
SER 72ARG 73 0.0863
ARG 73ASN 74 0.1448
ASN 74LEU 75 0.0284
LEU 75CYS 76 0.1359
CYS 76ASN 77 -0.1150
ASN 77ILE 78 0.2257
ILE 78PRO 79 -0.0859
PRO 79CYS 80 0.0419
CYS 80SER 81 -0.0109
SER 81ALA 82 -0.1023
ALA 82LEU 83 0.0174
LEU 83LEU 84 0.0224
LEU 84SER 85 -0.0419
SER 85SER 86 0.1638
SER 86ASP 87 -0.0419
ASP 87ILE 88 -0.0396
ILE 88THR 89 -0.0135
THR 89ALA 90 0.1010
ALA 90SER 91 -0.0201
SER 91VAL 92 0.0062
VAL 92ASN 93 0.0618
ASN 93CYS 94 0.0558
CYS 94ALA 95 -0.0468
ALA 95LYS 96 0.0080
LYS 96LYS 97 -0.0048
LYS 97ILE 98 -0.1711
ILE 98VAL 99 0.0198
VAL 99SER 100 0.0351
SER 100ASP 101 -0.0073
ASP 101GLY 102 0.0417
GLY 102ASN 103 0.0517
ASN 103GLY 104 -0.1097
GLY 104MET 105 -0.0084
MET 105ASN 106 -0.0133
ASN 106ALA 107 -0.1407
ALA 107TRP 108 0.0839
TRP 108VAL 109 -0.1788
VAL 109ALA 110 0.0548
ALA 110TRP 111 0.0208
TRP 111ARG 112 0.0227
ARG 112ASN 113 -0.0661
ASN 113ARG 114 0.0803
ARG 114CYS 115 0.0296
CYS 115LYS 116 -0.0461
LYS 116GLY 117 0.0085
GLY 117THR 118 0.0363
THR 118ASP 119 0.2807
ASP 119VAL 120 -0.1292
VAL 120GLN 121 0.1726
GLN 121ALA 122 -0.0705
ALA 122TRP 123 0.0083
TRP 123ILE 124 0.1292
ILE 124ARG 125 -0.0994
ARG 125GLY 126 0.4097
GLY 126CYS 127 -0.4787
CYS 127ARG 128 -0.0976
ARG 128LEU 129 0.2434

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.