CNRS Nantes University US2B US2B
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***  lysozyme  ***

CA strain for 2402132254172667999

---  normal mode 20  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1VAL 2 -0.0206
VAL 2PHE 3 0.1512
PHE 3GLY 4 -0.0098
GLY 4ARG 5 -0.1237
ARG 5CYS 6 0.2099
CYS 6GLU 7 -0.2466
GLU 7LEU 8 -0.0245
LEU 8ALA 9 -0.0300
ALA 9ALA 10 -0.1023
ALA 10ALA 11 -0.1893
ALA 11MET 12 0.0482
MET 12LYS 13 -0.0235
LYS 13ARG 14 -0.1330
ARG 14HIS 15 0.0042
HIS 15GLY 16 0.2555
GLY 16LEU 17 -0.1087
LEU 17ASP 18 0.1373
ASP 18ASN 19 0.2783
ASN 19TYR 20 0.2272
TYR 20ARG 21 0.1007
ARG 21GLY 22 0.1393
GLY 22TYR 23 -0.1716
TYR 23SER 24 0.1893
SER 24LEU 25 0.1054
LEU 25GLY 26 -0.0802
GLY 26ASN 27 0.1716
ASN 27TRP 28 0.0608
TRP 28VAL 29 0.0588
VAL 29CYS 30 -0.1243
CYS 30ALA 31 0.2794
ALA 31ALA 32 -0.2325
ALA 32LYS 33 0.0408
LYS 33PHE 34 -0.1074
PHE 34GLU 35 0.1744
GLU 35SER 36 -0.3837
SER 36ASN 37 -0.0304
ASN 37PHE 38 0.0118
PHE 38ASN 39 0.1051
ASN 39THR 40 0.0631
THR 40GLN 41 0.0808
GLN 41ALA 42 -0.0280
ALA 42THR 43 -0.1796
THR 43ASN 44 0.2163
ASN 44ARG 45 0.0270
ARG 45ASN 46 -0.1619
ASN 46THR 47 0.3941
THR 47ASP 48 -0.2291
ASP 48GLY 49 -0.2483
GLY 49SER 50 0.1280
SER 50THR 51 -0.0715
THR 51ASP 52 0.0891
ASP 52TYR 53 0.1691
TYR 53GLY 54 -0.0336
GLY 54ILE 55 0.1185
ILE 55LEU 56 -0.2550
LEU 56GLN 57 0.1607
GLN 57ILE 58 -0.2625
ILE 58ASN 59 0.0987
ASN 59SER 60 0.0138
SER 60ARG 61 -0.0035
ARG 61TRP 62 0.1055
TRP 62TRP 63 0.0918
TRP 63CYS 64 0.0101
CYS 64ASN 65 0.0183
ASN 65ASP 66 0.1751
ASP 66GLY 67 -0.1614
GLY 67ARG 68 0.0409
ARG 68THR 69 0.1530
THR 69PRO 70 -0.0611
PRO 70GLY 71 0.1920
GLY 71SER 72 -0.0974
SER 72ARG 73 -0.0225
ARG 73ASN 74 0.6589
ASN 74LEU 75 -0.0002
LEU 75CYS 76 0.0449
CYS 76ASN 77 0.0294
ASN 77ILE 78 -0.0020
ILE 78PRO 79 0.1018
PRO 79CYS 80 -0.1135
CYS 80SER 81 -0.0217
SER 81ALA 82 0.1633
ALA 82LEU 83 0.0104
LEU 83LEU 84 -0.0786
LEU 84SER 85 0.1008
SER 85SER 86 -0.0891
SER 86ASP 87 0.1140
ASP 87ILE 88 -0.1028
ILE 88THR 89 0.0213
THR 89ALA 90 0.2537
ALA 90SER 91 0.0790
SER 91VAL 92 0.2351
VAL 92ASN 93 0.0588
ASN 93CYS 94 -0.0342
CYS 94ALA 95 0.3446
ALA 95LYS 96 0.0558
LYS 96LYS 97 0.0586
LYS 97ILE 98 0.2567
ILE 98VAL 99 0.1021
VAL 99SER 100 -0.0081
SER 100ASP 101 -0.0771
ASP 101GLY 102 -0.1675
GLY 102ASN 103 0.0206
ASN 103GLY 104 0.1498
GLY 104MET 105 0.0624
MET 105ASN 106 -0.1081
ASN 106ALA 107 0.3280
ALA 107TRP 108 -0.3512
TRP 108VAL 109 0.0892
VAL 109ALA 110 -0.0076
ALA 110TRP 111 -0.1007
TRP 111ARG 112 -0.0942
ARG 112ASN 113 0.0011
ASN 113ARG 114 0.0879
ARG 114CYS 115 0.1039
CYS 115LYS 116 -0.1411
LYS 116GLY 117 0.1505
GLY 117THR 118 0.0213
THR 118ASP 119 0.3365
ASP 119VAL 120 -0.2195
VAL 120GLN 121 0.4390
GLN 121ALA 122 -0.1138
ALA 122TRP 123 0.1206
TRP 123ILE 124 0.2218
ILE 124ARG 125 -0.0862
ARG 125GLY 126 0.1018
GLY 126CYS 127 0.0470
CYS 127ARG 128 0.1558
ARG 128LEU 129 -0.2499

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.