CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  lysozyme2  ***

CA strain for 2402141427352770497

---  normal mode 11  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1VAL 2 0.0988
VAL 2PHE 3 0.5131
PHE 3GLY 4 0.5671
GLY 4ARG 5 0.4520
ARG 5CYS 6 1.2713
CYS 6GLU 7 1.0365
GLU 7LEU 8 0.7178
LEU 8ALA 9 0.2332
ALA 9ALA 10 0.7108
ALA 10ALA 11 0.6165
ALA 11MET 12 0.1783
MET 12LYS 13 0.7647
LYS 13ARG 14 0.8272
ARG 14HIS 15 0.0722
HIS 15GLY 16 0.6259
GLY 16LEU 17 0.4112
LEU 17ASP 18 0.6010
ASP 18ASN 19 0.9203
ASN 19TYR 20 1.0134
TYR 20ARG 21 0.3477
ARG 21GLY 22 0.9627
GLY 22TYR 23 0.2329
TYR 23SER 24 1.0406
SER 24LEU 25 0.8835
LEU 25GLY 26 0.6185
GLY 26ASN 27 0.3041
ASN 27TRP 28 0.6325
TRP 28VAL 29 0.5429
VAL 29CYS 30 0.5633
CYS 30ALA 31 0.7754
ALA 31ALA 32 0.3887
ALA 32LYS 33 0.3380
LYS 33PHE 34 1.0262
PHE 34GLU 35 0.5207
GLU 35SER 36 0.9365
SER 36ASN 37 0.0307
ASN 37PHE 38 0.6819
PHE 38ASN 39 -0.4523
ASN 39THR 40 -0.0834
THR 40GLN 41 0.1556
GLN 41ALA 42 0.2304
ALA 42THR 43 -0.7626
THR 43ASN 44 -0.2274
ASN 44ARG 45 0.6135
ARG 45ASN 46 0.2815
ASN 46THR 47 1.0240
THR 47ASP 48 0.9369
ASP 48GLY 49 0.3526
GLY 49SER 50 0.4902
SER 50THR 51 -0.1979
THR 51ASP 52 0.0502
ASP 52TYR 53 0.1131
TYR 53GLY 54 -0.3888
GLY 54ILE 55 -0.4476
ILE 55LEU 56 0.5349
LEU 56GLN 57 -0.0100
GLN 57ILE 58 -0.2556
ILE 58ASN 59 0.1718
ASN 59SER 60 0.0301
SER 60ARG 61 -0.2733
ARG 61TRP 62 0.3377
TRP 62TRP 63 0.1578
TRP 63CYS 64 0.3624
CYS 64ASN 65 -0.0110
ASN 65ASP 66 -0.1105
ASP 66GLY 67 0.0645
GLY 67ARG 68 -0.0419
ARG 68THR 69 0.2384
THR 69PRO 70 -0.1702
PRO 70GLY 71 0.4459
GLY 71SER 72 0.0208
SER 72ARG 73 -0.0093
ARG 73ASN 74 0.3133
ASN 74LEU 75 0.0929
LEU 75CYS 76 0.1893
CYS 76ASN 77 0.2061
ASN 77ILE 78 0.0075
ILE 78PRO 79 -0.0395
PRO 79CYS 80 0.0085
CYS 80SER 81 0.2629
SER 81ALA 82 -0.1101
ALA 82LEU 83 0.1220
LEU 83LEU 84 0.3151
LEU 84SER 85 -0.0800
SER 85SER 86 -0.2743
SER 86ASP 87 0.2778
ASP 87ILE 88 0.3307
ILE 88THR 89 0.0738
THR 89ALA 90 -0.2200
ALA 90SER 91 0.2166
SER 91VAL 92 0.1167
VAL 92ASN 93 0.1446
ASN 93CYS 94 0.1134
CYS 94ALA 95 0.2362
ALA 95LYS 96 0.3239
LYS 96LYS 97 0.2053
LYS 97ILE 98 0.3149
ILE 98VAL 99 0.5626
VAL 99SER 100 0.8731
SER 100ASP 101 0.4387
ASP 101GLY 102 1.2274
GLY 102ASN 103 0.9879
ASN 103GLY 104 1.2931
GLY 104MET 105 0.9552
MET 105ASN 106 0.9524
ASN 106ALA 107 0.3548
ALA 107TRP 108 1.0644
TRP 108VAL 109 1.0128
VAL 109ALA 110 1.1091
ALA 110TRP 111 0.9511
TRP 111ARG 112 0.6896
ARG 112ASN 113 1.1592
ASN 113ARG 114 1.0967
ARG 114CYS 115 1.1574
CYS 115LYS 116 0.9488
LYS 116GLY 117 1.4781
GLY 117THR 118 1.0440
THR 118ASP 119 1.4934
ASP 119VAL 120 1.6287
VAL 120GLN 121 0.5495
GLN 121ALA 122 1.3041
ALA 122TRP 123 1.2856
TRP 123ILE 124 1.1094
ILE 124ARG 125 0.9447
ARG 125GLY 126 1.7054
GLY 126CYS 127 1.3272
CYS 127ARG 128 1.7439
ARG 128LEU 129 1.7247

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.