This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
VAL 2
0.9925
VAL 2
PHE 3
1.3302
PHE 3
GLY 4
1.1231
GLY 4
ARG 5
1.0296
ARG 5
CYS 6
0.7178
CYS 6
GLU 7
0.6224
GLU 7
LEU 8
0.7817
LEU 8
ALA 9
0.8725
ALA 9
ALA 10
0.9315
ALA 10
ALA 11
1.0510
ALA 11
MET 12
0.7855
MET 12
LYS 13
0.7512
LYS 13
ARG 14
1.1278
ARG 14
HIS 15
0.9240
HIS 15
GLY 16
0.9466
GLY 16
LEU 17
0.4822
LEU 17
ASP 18
0.7473
ASP 18
ASN 19
1.0259
ASN 19
TYR 20
0.7217
TYR 20
ARG 21
0.8699
ARG 21
GLY 22
0.6571
GLY 22
TYR 23
0.7628
TYR 23
SER 24
1.1654
SER 24
LEU 25
0.8495
LEU 25
GLY 26
0.1219
GLY 26
ASN 27
0.9919
ASN 27
TRP 28
-0.2310
TRP 28
VAL 29
0.3818
VAL 29
CYS 30
0.7847
CYS 30
ALA 31
0.1740
ALA 31
ALA 32
0.1668
ALA 32
LYS 33
0.5198
LYS 33
PHE 34
0.7231
PHE 34
GLU 35
0.8340
GLU 35
SER 36
1.0253
SER 36
ASN 37
1.0542
ASN 37
PHE 38
0.6376
PHE 38
ASN 39
1.1083
ASN 39
THR 40
0.6261
THR 40
GLN 41
0.5529
GLN 41
ALA 42
0.9378
ALA 42
THR 43
1.5149
THR 43
ASN 44
1.2027
ASN 44
ARG 45
1.0193
ARG 45
ASN 46
1.5838
ASN 46
THR 47
1.8090
THR 47
ASP 48
1.7631
ASP 48
GLY 49
1.3085
GLY 49
SER 50
1.3708
SER 50
THR 51
0.8506
THR 51
ASP 52
0.9126
ASP 52
TYR 53
0.5196
TYR 53
GLY 54
1.1251
GLY 54
ILE 55
0.7446
ILE 55
LEU 56
0.7507
LEU 56
GLN 57
1.0812
GLN 57
ILE 58
0.5253
ILE 58
ASN 59
0.8565
ASN 59
SER 60
0.2395
SER 60
ARG 61
0.3942
ARG 61
TRP 62
0.6357
TRP 62
TRP 63
0.7517
TRP 63
CYS 64
0.6260
CYS 64
ASN 65
0.7959
ASN 65
ASP 66
0.8130
ASP 66
GLY 67
1.1766
GLY 67
ARG 68
0.9101
ARG 68
THR 69
1.3944
THR 69
PRO 70
1.2163
PRO 70
GLY 71
0.6699
GLY 71
SER 72
0.9487
SER 72
ARG 73
0.5291
ARG 73
ASN 74
0.8158
ASN 74
LEU 75
0.8392
LEU 75
CYS 76
0.7254
CYS 76
ASN 77
0.3094
ASN 77
ILE 78
0.9522
ILE 78
PRO 79
0.7403
PRO 79
CYS 80
0.8648
CYS 80
SER 81
0.6078
SER 81
ALA 82
0.5489
ALA 82
LEU 83
0.2178
LEU 83
LEU 84
0.9521
LEU 84
SER 85
0.7172
SER 85
SER 86
-0.0065
SER 86
ASP 87
1.0206
ASP 87
ILE 88
0.8975
ILE 88
THR 89
0.3265
THR 89
ALA 90
0.0942
ALA 90
SER 91
-0.9803
SER 91
VAL 92
0.6469
VAL 92
ASN 93
-0.0117
ASN 93
CYS 94
-0.2293
CYS 94
ALA 95
0.2192
ALA 95
LYS 96
0.5569
LYS 96
LYS 97
0.5505
LYS 97
ILE 98
0.5896
ILE 98
VAL 99
0.8230
VAL 99
SER 100
0.3139
SER 100
ASP 101
1.0553
ASP 101
GLY 102
0.4407
GLY 102
ASN 103
1.1567
ASN 103
GLY 104
1.1810
GLY 104
MET 105
0.7581
MET 105
ASN 106
1.2599
ASN 106
ALA 107
0.6572
ALA 107
TRP 108
0.1541
TRP 108
VAL 109
1.2880
VAL 109
ALA 110
1.1200
ALA 110
TRP 111
0.4371
TRP 111
ARG 112
1.3277
ARG 112
ASN 113
-0.4232
ASN 113
ARG 114
1.2962
ARG 114
CYS 115
0.8159
CYS 115
LYS 116
1.0727
LYS 116
GLY 117
1.3861
GLY 117
THR 118
1.3523
THR 118
ASP 119
1.7003
ASP 119
VAL 120
1.6370
VAL 120
GLN 121
1.0623
GLN 121
ALA 122
1.1092
ALA 122
TRP 123
1.3284
TRP 123
ILE 124
0.9352
ILE 124
ARG 125
0.6112
ARG 125
GLY 126
0.1726
GLY 126
CYS 127
0.8944
CYS 127
ARG 128
1.0123
ARG 128
LEU 129
1.5103
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.