CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  lysozyme2  ***

CA strain for 2402141427352770497

---  normal mode 27  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1VAL 2 1.1509
VAL 2PHE 3 1.0478
PHE 3GLY 4 0.8908
GLY 4ARG 5 1.0928
ARG 5CYS 6 0.6761
CYS 6GLU 7 1.3493
GLU 7LEU 8 0.7900
LEU 8ALA 9 0.6777
ALA 9ALA 10 0.8752
ALA 10ALA 11 1.1370
ALA 11MET 12 0.0673
MET 12LYS 13 0.4889
LYS 13ARG 14 0.9964
ARG 14HIS 15 0.5142
HIS 15GLY 16 1.1495
GLY 16LEU 17 0.3065
LEU 17ASP 18 0.8470
ASP 18ASN 19 1.4467
ASN 19TYR 20 1.2511
TYR 20ARG 21 1.5674
ARG 21GLY 22 1.2244
GLY 22TYR 23 1.6166
TYR 23SER 24 0.4930
SER 24LEU 25 0.8639
LEU 25GLY 26 0.3968
GLY 26ASN 27 0.0515
ASN 27TRP 28 0.4549
TRP 28VAL 29 0.1851
VAL 29CYS 30 0.7858
CYS 30ALA 31 0.3457
ALA 31ALA 32 0.6184
ALA 32LYS 33 0.5806
LYS 33PHE 34 1.1185
PHE 34GLU 35 0.4513
GLU 35SER 36 1.0589
SER 36ASN 37 0.4940
ASN 37PHE 38 0.8056
PHE 38ASN 39 0.8444
ASN 39THR 40 0.9153
THR 40GLN 41 1.3350
GLN 41ALA 42 0.9633
ALA 42THR 43 0.9385
THR 43ASN 44 1.0044
ASN 44ARG 45 1.3575
ARG 45ASN 46 1.0154
ASN 46THR 47 1.0661
THR 47ASP 48 0.7675
ASP 48GLY 49 1.1622
GLY 49SER 50 0.3742
SER 50THR 51 -0.1704
THR 51ASP 52 0.5615
ASP 52TYR 53 0.5678
TYR 53GLY 54 0.6024
GLY 54ILE 55 0.6815
ILE 55LEU 56 0.6028
LEU 56GLN 57 0.5765
GLN 57ILE 58 0.4772
ILE 58ASN 59 -0.6905
ASN 59SER 60 0.3530
SER 60ARG 61 0.7359
ARG 61TRP 62 0.4408
TRP 62TRP 63 0.5721
TRP 63CYS 64 -0.0728
CYS 64ASN 65 0.1318
ASN 65ASP 66 -0.3761
ASP 66GLY 67 1.3569
GLY 67ARG 68 1.0620
ARG 68THR 69 1.3185
THR 69PRO 70 1.2824
PRO 70GLY 71 1.1525
GLY 71SER 72 1.4671
SER 72ARG 73 1.1515
ARG 73ASN 74 1.2682
ASN 74LEU 75 0.0004
LEU 75CYS 76 1.0066
CYS 76ASN 77 0.5021
ASN 77ILE 78 0.9698
ILE 78PRO 79 0.6318
PRO 79CYS 80 0.3796
CYS 80SER 81 1.1324
SER 81ALA 82 0.1515
ALA 82LEU 83 0.6421
LEU 83LEU 84 1.2404
LEU 84SER 85 0.5208
SER 85SER 86 0.8779
SER 86ASP 87 1.0957
ASP 87ILE 88 1.1706
ILE 88THR 89 0.7740
THR 89ALA 90 -0.4148
ALA 90SER 91 0.3161
SER 91VAL 92 0.8164
VAL 92ASN 93 0.5372
ASN 93CYS 94 0.0479
CYS 94ALA 95 0.4116
ALA 95LYS 96 1.2190
LYS 96LYS 97 0.7867
LYS 97ILE 98 0.8632
ILE 98VAL 99 0.9632
VAL 99SER 100 1.3968
SER 100ASP 101 1.5320
ASP 101GLY 102 1.7701
GLY 102ASN 103 1.6053
ASN 103GLY 104 1.5904
GLY 104MET 105 1.2921
MET 105ASN 106 1.2064
ASN 106ALA 107 1.3145
ALA 107TRP 108 0.3369
TRP 108VAL 109 1.4004
VAL 109ALA 110 1.1009
ALA 110TRP 111 0.9746
TRP 111ARG 112 1.4867
ARG 112ASN 113 0.9113
ASN 113ARG 114 1.4302
ARG 114CYS 115 0.5760
CYS 115LYS 116 1.3303
LYS 116GLY 117 1.5933
GLY 117THR 118 1.0394
THR 118ASP 119 1.6951
ASP 119VAL 120 1.7258
VAL 120GLN 121 0.8300
GLN 121ALA 122 1.2831
ALA 122TRP 123 1.4880
TRP 123ILE 124 0.5517
ILE 124ARG 125 1.5156
ARG 125GLY 126 1.4492
GLY 126CYS 127 1.3412
CYS 127ARG 128 0.3839
ARG 128LEU 129 0.4238

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.