This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
0.0058
SER 2
ASP 3
-0.1429
ASP 3
GLU 4
0.0576
GLU 4
PRO 5
0.3140
PRO 5
VAL 6
0.0458
VAL 6
CYS 7
0.1208
CYS 7
ALA 8
0.0423
ALA 8
SER 9
0.0560
SER 9
ASP 10
-0.0426
ASP 10
ASN 11
-0.0271
ASN 11
ALA 12
-0.1077
ALA 12
THR 13
0.2854
THR 13
TYR 14
-0.2477
TYR 14
ALA 15
0.1571
ALA 15
SER 16
0.1088
SER 16
GLU 17
-0.0157
GLU 17
CYS 18
0.4007
CYS 18
ALA 19
0.0602
ALA 19
MET 20
-0.0816
MET 20
LYS 21
0.0499
LYS 21
GLU 22
0.2111
GLU 22
ALA 23
0.0178
ALA 23
ALA 24
-0.0001
ALA 24
CYS 25
0.1098
CYS 25
SER 26
0.0650
SER 26
SER 27
-0.0449
SER 27
GLY 28
0.0074
GLY 28
VAL 29
0.0148
VAL 29
LEU 30
0.1727
LEU 30
LEU 31
-0.0820
LEU 31
GLU 32
0.1823
GLU 32
VAL 33
-0.1014
VAL 33
LYS 34
-0.0211
LYS 34
HIS 35
0.0529
HIS 35
SER 36
0.1604
SER 36
GLY 37
-0.0959
GLY 37
SER 38
0.0236
SER 38
CYS 39
0.2078
CYS 39
ASN 40
-0.0901
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.