CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 10  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 0.0058
SER 2ASP 3 -0.1429
ASP 3GLU 4 0.0576
GLU 4PRO 5 0.3140
PRO 5VAL 6 0.0458
VAL 6CYS 7 0.1208
CYS 7ALA 8 0.0423
ALA 8SER 9 0.0560
SER 9ASP 10 -0.0426
ASP 10ASN 11 -0.0271
ASN 11ALA 12 -0.1077
ALA 12THR 13 0.2854
THR 13TYR 14 -0.2477
TYR 14ALA 15 0.1571
ALA 15SER 16 0.1088
SER 16GLU 17 -0.0157
GLU 17CYS 18 0.4007
CYS 18ALA 19 0.0602
ALA 19MET 20 -0.0816
MET 20LYS 21 0.0499
LYS 21GLU 22 0.2111
GLU 22ALA 23 0.0178
ALA 23ALA 24 -0.0001
ALA 24CYS 25 0.1098
CYS 25SER 26 0.0650
SER 26SER 27 -0.0449
SER 27GLY 28 0.0074
GLY 28VAL 29 0.0148
VAL 29LEU 30 0.1727
LEU 30LEU 31 -0.0820
LEU 31GLU 32 0.1823
GLU 32VAL 33 -0.1014
VAL 33LYS 34 -0.0211
LYS 34HIS 35 0.0529
HIS 35SER 36 0.1604
SER 36GLY 37 -0.0959
GLY 37SER 38 0.0236
SER 38CYS 39 0.2078
CYS 39ASN 40 -0.0901

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.