CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 11  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 0.0188
SER 2ASP 3 -0.0293
ASP 3GLU 4 -0.1228
GLU 4PRO 5 -0.3387
PRO 5VAL 6 0.0024
VAL 6CYS 7 0.0663
CYS 7ALA 8 -0.0273
ALA 8SER 9 0.0943
SER 9ASP 10 0.0625
ASP 10ASN 11 -0.2142
ASN 11ALA 12 0.0762
ALA 12THR 13 0.0648
THR 13TYR 14 -0.1098
TYR 14ALA 15 -0.2503
ALA 15SER 16 0.2493
SER 16GLU 17 -0.0077
GLU 17CYS 18 -0.0226
CYS 18ALA 19 -0.1220
ALA 19MET 20 0.0174
MET 20LYS 21 0.0009
LYS 21GLU 22 -0.1258
GLU 22ALA 23 0.0683
ALA 23ALA 24 0.0741
ALA 24CYS 25 -0.0212
CYS 25SER 26 0.0677
SER 26SER 27 -0.0957
SER 27GLY 28 -0.0603
GLY 28VAL 29 -0.0489
VAL 29LEU 30 0.2634
LEU 30LEU 31 -0.0829
LEU 31GLU 32 0.0942
GLU 32VAL 33 0.1939
VAL 33LYS 34 -0.1067
LYS 34HIS 35 0.0873
HIS 35SER 36 0.1753
SER 36GLY 37 -0.0424
GLY 37SER 38 -0.0173
SER 38CYS 39 -0.0379
CYS 39ASN 40 -0.0886

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.