This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
0.0188
SER 2
ASP 3
-0.0293
ASP 3
GLU 4
-0.1228
GLU 4
PRO 5
-0.3387
PRO 5
VAL 6
0.0024
VAL 6
CYS 7
0.0663
CYS 7
ALA 8
-0.0273
ALA 8
SER 9
0.0943
SER 9
ASP 10
0.0625
ASP 10
ASN 11
-0.2142
ASN 11
ALA 12
0.0762
ALA 12
THR 13
0.0648
THR 13
TYR 14
-0.1098
TYR 14
ALA 15
-0.2503
ALA 15
SER 16
0.2493
SER 16
GLU 17
-0.0077
GLU 17
CYS 18
-0.0226
CYS 18
ALA 19
-0.1220
ALA 19
MET 20
0.0174
MET 20
LYS 21
0.0009
LYS 21
GLU 22
-0.1258
GLU 22
ALA 23
0.0683
ALA 23
ALA 24
0.0741
ALA 24
CYS 25
-0.0212
CYS 25
SER 26
0.0677
SER 26
SER 27
-0.0957
SER 27
GLY 28
-0.0603
GLY 28
VAL 29
-0.0489
VAL 29
LEU 30
0.2634
LEU 30
LEU 31
-0.0829
LEU 31
GLU 32
0.0942
GLU 32
VAL 33
0.1939
VAL 33
LYS 34
-0.1067
LYS 34
HIS 35
0.0873
HIS 35
SER 36
0.1753
SER 36
GLY 37
-0.0424
GLY 37
SER 38
-0.0173
SER 38
CYS 39
-0.0379
CYS 39
ASN 40
-0.0886
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.