CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 12  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 -0.0405
SER 2ASP 3 0.0528
ASP 3GLU 4 0.1216
GLU 4PRO 5 0.1504
PRO 5VAL 6 0.1227
VAL 6CYS 7 -0.0477
CYS 7ALA 8 -0.0592
ALA 8SER 9 0.0984
SER 9ASP 10 0.2636
ASP 10ASN 11 -0.5094
ASN 11ALA 12 0.3401
ALA 12THR 13 -0.0388
THR 13TYR 14 0.2892
TYR 14ALA 15 -0.1651
ALA 15SER 16 -0.0180
SER 16GLU 17 0.0593
GLU 17CYS 18 -0.3696
CYS 18ALA 19 -0.0325
ALA 19MET 20 0.0222
MET 20LYS 21 0.1010
LYS 21GLU 22 -0.3742
GLU 22ALA 23 0.0763
ALA 23ALA 24 0.0593
ALA 24CYS 25 -0.3849
CYS 25SER 26 -0.0045
SER 26SER 27 0.0376
SER 27GLY 28 -0.0504
GLY 28VAL 29 -0.3037
VAL 29LEU 30 0.1895
LEU 30LEU 31 0.0277
LEU 31GLU 32 -0.0564
GLU 32VAL 33 0.5731
VAL 33LYS 34 -0.4547
LYS 34HIS 35 0.0670
HIS 35SER 36 -0.1169
SER 36GLY 37 0.0316
GLY 37SER 38 -0.0558
SER 38CYS 39 -0.0784
CYS 39ASN 40 -0.0353

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.