This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
-0.0405
SER 2
ASP 3
0.0528
ASP 3
GLU 4
0.1216
GLU 4
PRO 5
0.1504
PRO 5
VAL 6
0.1227
VAL 6
CYS 7
-0.0477
CYS 7
ALA 8
-0.0592
ALA 8
SER 9
0.0984
SER 9
ASP 10
0.2636
ASP 10
ASN 11
-0.5094
ASN 11
ALA 12
0.3401
ALA 12
THR 13
-0.0388
THR 13
TYR 14
0.2892
TYR 14
ALA 15
-0.1651
ALA 15
SER 16
-0.0180
SER 16
GLU 17
0.0593
GLU 17
CYS 18
-0.3696
CYS 18
ALA 19
-0.0325
ALA 19
MET 20
0.0222
MET 20
LYS 21
0.1010
LYS 21
GLU 22
-0.3742
GLU 22
ALA 23
0.0763
ALA 23
ALA 24
0.0593
ALA 24
CYS 25
-0.3849
CYS 25
SER 26
-0.0045
SER 26
SER 27
0.0376
SER 27
GLY 28
-0.0504
GLY 28
VAL 29
-0.3037
VAL 29
LEU 30
0.1895
LEU 30
LEU 31
0.0277
LEU 31
GLU 32
-0.0564
GLU 32
VAL 33
0.5731
VAL 33
LYS 34
-0.4547
LYS 34
HIS 35
0.0670
HIS 35
SER 36
-0.1169
SER 36
GLY 37
0.0316
GLY 37
SER 38
-0.0558
SER 38
CYS 39
-0.0784
CYS 39
ASN 40
-0.0353
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.