This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
-0.2823
SER 2
ASP 3
0.1602
ASP 3
GLU 4
-0.1134
GLU 4
PRO 5
-0.0916
PRO 5
VAL 6
0.2094
VAL 6
CYS 7
-0.0320
CYS 7
ALA 8
0.1480
ALA 8
SER 9
0.0509
SER 9
ASP 10
-0.2858
ASP 10
ASN 11
0.7341
ASN 11
ALA 12
0.0364
ALA 12
THR 13
-0.1372
THR 13
TYR 14
0.3503
TYR 14
ALA 15
-0.1054
ALA 15
SER 16
0.1825
SER 16
GLU 17
0.2198
GLU 17
CYS 18
-0.3682
CYS 18
ALA 19
0.2604
ALA 19
MET 20
0.0112
MET 20
LYS 21
0.0224
LYS 21
GLU 22
0.1023
GLU 22
ALA 23
0.3622
ALA 23
ALA 24
-0.0447
ALA 24
CYS 25
0.2161
CYS 25
SER 26
0.1012
SER 26
SER 27
-0.0482
SER 27
GLY 28
0.0274
GLY 28
VAL 29
0.1451
VAL 29
LEU 30
0.1632
LEU 30
LEU 31
-0.0766
LEU 31
GLU 32
0.2891
GLU 32
VAL 33
0.0159
VAL 33
LYS 34
-0.2669
LYS 34
HIS 35
0.0765
HIS 35
SER 36
-0.0480
SER 36
GLY 37
0.1127
GLY 37
SER 38
-0.0371
SER 38
CYS 39
0.1308
CYS 39
ASN 40
0.0740
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.