CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 13  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 -0.2823
SER 2ASP 3 0.1602
ASP 3GLU 4 -0.1134
GLU 4PRO 5 -0.0916
PRO 5VAL 6 0.2094
VAL 6CYS 7 -0.0320
CYS 7ALA 8 0.1480
ALA 8SER 9 0.0509
SER 9ASP 10 -0.2858
ASP 10ASN 11 0.7341
ASN 11ALA 12 0.0364
ALA 12THR 13 -0.1372
THR 13TYR 14 0.3503
TYR 14ALA 15 -0.1054
ALA 15SER 16 0.1825
SER 16GLU 17 0.2198
GLU 17CYS 18 -0.3682
CYS 18ALA 19 0.2604
ALA 19MET 20 0.0112
MET 20LYS 21 0.0224
LYS 21GLU 22 0.1023
GLU 22ALA 23 0.3622
ALA 23ALA 24 -0.0447
ALA 24CYS 25 0.2161
CYS 25SER 26 0.1012
SER 26SER 27 -0.0482
SER 27GLY 28 0.0274
GLY 28VAL 29 0.1451
VAL 29LEU 30 0.1632
LEU 30LEU 31 -0.0766
LEU 31GLU 32 0.2891
GLU 32VAL 33 0.0159
VAL 33LYS 34 -0.2669
LYS 34HIS 35 0.0765
HIS 35SER 36 -0.0480
SER 36GLY 37 0.1127
GLY 37SER 38 -0.0371
SER 38CYS 39 0.1308
CYS 39ASN 40 0.0740

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.