CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 14  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 0.0572
SER 2ASP 3 0.0890
ASP 3GLU 4 0.0013
GLU 4PRO 5 0.0789
PRO 5VAL 6 -0.0529
VAL 6CYS 7 -0.0287
CYS 7ALA 8 -0.0097
ALA 8SER 9 -0.0771
SER 9ASP 10 -0.2169
ASP 10ASN 11 0.1463
ASN 11ALA 12 -0.2700
ALA 12THR 13 -0.0991
THR 13TYR 14 -0.4320
TYR 14ALA 15 -0.5797
ALA 15SER 16 0.2192
SER 16GLU 17 0.1788
GLU 17CYS 18 -0.4791
CYS 18ALA 19 0.0791
ALA 19MET 20 0.2093
MET 20LYS 21 -0.1485
LYS 21GLU 22 -0.0150
GLU 22ALA 23 0.0920
ALA 23ALA 24 0.1607
ALA 24CYS 25 0.0594
CYS 25SER 26 0.1540
SER 26SER 27 -0.1444
SER 27GLY 28 -0.0089
GLY 28VAL 29 0.0014
VAL 29LEU 30 -0.0545
LEU 30LEU 31 -0.0586
LEU 31GLU 32 0.0415
GLU 32VAL 33 -0.0151
VAL 33LYS 34 0.5067
LYS 34HIS 35 -0.0438
HIS 35SER 36 0.0912
SER 36GLY 37 -0.0185
GLY 37SER 38 0.2434
SER 38CYS 39 -0.0338
CYS 39ASN 40 -0.0868

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.