CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 15  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 -0.1526
SER 2ASP 3 0.2238
ASP 3GLU 4 0.2171
GLU 4PRO 5 -0.1213
PRO 5VAL 6 0.0824
VAL 6CYS 7 0.1672
CYS 7ALA 8 -0.1813
ALA 8SER 9 -0.0121
SER 9ASP 10 -0.1313
ASP 10ASN 11 -0.3336
ASN 11ALA 12 -0.0689
ALA 12THR 13 -0.2598
THR 13TYR 14 0.4837
TYR 14ALA 15 -0.2312
ALA 15SER 16 0.0991
SER 16GLU 17 0.0180
GLU 17CYS 18 -0.0762
CYS 18ALA 19 -0.1584
ALA 19MET 20 0.0970
MET 20LYS 21 0.0413
LYS 21GLU 22 -0.1923
GLU 22ALA 23 0.0285
ALA 23ALA 24 0.1352
ALA 24CYS 25 0.0950
CYS 25SER 26 0.1076
SER 26SER 27 -0.0908
SER 27GLY 28 0.0099
GLY 28VAL 29 0.0428
VAL 29LEU 30 -0.2206
LEU 30LEU 31 -0.0151
LEU 31GLU 32 0.0068
GLU 32VAL 33 -0.0204
VAL 33LYS 34 -0.0257
LYS 34HIS 35 0.0385
HIS 35SER 36 0.1445
SER 36GLY 37 0.0691
GLY 37SER 38 -0.0129
SER 38CYS 39 -0.4758
CYS 39ASN 40 0.0271

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.