This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
-0.1526
SER 2
ASP 3
0.2238
ASP 3
GLU 4
0.2171
GLU 4
PRO 5
-0.1213
PRO 5
VAL 6
0.0824
VAL 6
CYS 7
0.1672
CYS 7
ALA 8
-0.1813
ALA 8
SER 9
-0.0121
SER 9
ASP 10
-0.1313
ASP 10
ASN 11
-0.3336
ASN 11
ALA 12
-0.0689
ALA 12
THR 13
-0.2598
THR 13
TYR 14
0.4837
TYR 14
ALA 15
-0.2312
ALA 15
SER 16
0.0991
SER 16
GLU 17
0.0180
GLU 17
CYS 18
-0.0762
CYS 18
ALA 19
-0.1584
ALA 19
MET 20
0.0970
MET 20
LYS 21
0.0413
LYS 21
GLU 22
-0.1923
GLU 22
ALA 23
0.0285
ALA 23
ALA 24
0.1352
ALA 24
CYS 25
0.0950
CYS 25
SER 26
0.1076
SER 26
SER 27
-0.0908
SER 27
GLY 28
0.0099
GLY 28
VAL 29
0.0428
VAL 29
LEU 30
-0.2206
LEU 30
LEU 31
-0.0151
LEU 31
GLU 32
0.0068
GLU 32
VAL 33
-0.0204
VAL 33
LYS 34
-0.0257
LYS 34
HIS 35
0.0385
HIS 35
SER 36
0.1445
SER 36
GLY 37
0.0691
GLY 37
SER 38
-0.0129
SER 38
CYS 39
-0.4758
CYS 39
ASN 40
0.0271
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.