CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 16  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 -0.2144
SER 2ASP 3 0.2050
ASP 3GLU 4 0.0476
GLU 4PRO 5 -0.1357
PRO 5VAL 6 0.2857
VAL 6CYS 7 0.0214
CYS 7ALA 8 0.0621
ALA 8SER 9 -0.0653
SER 9ASP 10 -0.2645
ASP 10ASN 11 -0.1308
ASN 11ALA 12 0.1862
ALA 12THR 13 -0.0223
THR 13TYR 14 -0.4935
TYR 14ALA 15 0.3681
ALA 15SER 16 0.1447
SER 16GLU 17 0.0591
GLU 17CYS 18 0.2656
CYS 18ALA 19 0.0523
ALA 19MET 20 0.1015
MET 20LYS 21 -0.2769
LYS 21GLU 22 0.4530
GLU 22ALA 23 -0.0337
ALA 23ALA 24 0.2804
ALA 24CYS 25 0.1420
CYS 25SER 26 0.3480
SER 26SER 27 -0.1630
SER 27GLY 28 0.1574
GLY 28VAL 29 0.1909
VAL 29LEU 30 -0.0804
LEU 30LEU 31 -0.0075
LEU 31GLU 32 0.3539
GLU 32VAL 33 0.4678
VAL 33LYS 34 -0.1325
LYS 34HIS 35 0.0931
HIS 35SER 36 0.1561
SER 36GLY 37 0.0845
GLY 37SER 38 -0.1126
SER 38CYS 39 -0.1010
CYS 39ASN 40 -0.0921

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.