This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
-0.2144
SER 2
ASP 3
0.2050
ASP 3
GLU 4
0.0476
GLU 4
PRO 5
-0.1357
PRO 5
VAL 6
0.2857
VAL 6
CYS 7
0.0214
CYS 7
ALA 8
0.0621
ALA 8
SER 9
-0.0653
SER 9
ASP 10
-0.2645
ASP 10
ASN 11
-0.1308
ASN 11
ALA 12
0.1862
ALA 12
THR 13
-0.0223
THR 13
TYR 14
-0.4935
TYR 14
ALA 15
0.3681
ALA 15
SER 16
0.1447
SER 16
GLU 17
0.0591
GLU 17
CYS 18
0.2656
CYS 18
ALA 19
0.0523
ALA 19
MET 20
0.1015
MET 20
LYS 21
-0.2769
LYS 21
GLU 22
0.4530
GLU 22
ALA 23
-0.0337
ALA 23
ALA 24
0.2804
ALA 24
CYS 25
0.1420
CYS 25
SER 26
0.3480
SER 26
SER 27
-0.1630
SER 27
GLY 28
0.1574
GLY 28
VAL 29
0.1909
VAL 29
LEU 30
-0.0804
LEU 30
LEU 31
-0.0075
LEU 31
GLU 32
0.3539
GLU 32
VAL 33
0.4678
VAL 33
LYS 34
-0.1325
LYS 34
HIS 35
0.0931
HIS 35
SER 36
0.1561
SER 36
GLY 37
0.0845
GLY 37
SER 38
-0.1126
SER 38
CYS 39
-0.1010
CYS 39
ASN 40
-0.0921
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.