This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
-0.0159
SER 2
ASP 3
-0.0657
ASP 3
GLU 4
0.0486
GLU 4
PRO 5
0.0463
PRO 5
VAL 6
-0.0101
VAL 6
CYS 7
0.0029
CYS 7
ALA 8
0.0022
ALA 8
SER 9
-0.0034
SER 9
ASP 10
-0.0003
ASP 10
ASN 11
0.0047
ASN 11
ALA 12
-0.0068
ALA 12
THR 13
-0.0193
THR 13
TYR 14
0.0044
TYR 14
ALA 15
-0.1088
ALA 15
SER 16
0.0520
SER 16
GLU 17
-0.0068
GLU 17
CYS 18
-0.0581
CYS 18
ALA 19
0.0173
ALA 19
MET 20
0.0003
MET 20
LYS 21
-0.0072
LYS 21
GLU 22
-0.0073
GLU 22
ALA 23
0.0071
ALA 23
ALA 24
0.0018
ALA 24
CYS 25
-0.0067
CYS 25
SER 26
0.0007
SER 26
SER 27
0.0029
SER 27
GLY 28
-0.0006
GLY 28
VAL 29
0.0005
VAL 29
LEU 30
-0.0020
LEU 30
LEU 31
0.0013
LEU 31
GLU 32
-0.0021
GLU 32
VAL 33
0.0098
VAL 33
LYS 34
0.0091
LYS 34
HIS 35
0.0078
HIS 35
SER 36
0.0313
SER 36
GLY 37
-0.0065
GLY 37
SER 38
0.0268
SER 38
CYS 39
-0.0033
CYS 39
ASN 40
-0.0016
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.