CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 7  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 -0.0159
SER 2ASP 3 -0.0657
ASP 3GLU 4 0.0486
GLU 4PRO 5 0.0463
PRO 5VAL 6 -0.0101
VAL 6CYS 7 0.0029
CYS 7ALA 8 0.0022
ALA 8SER 9 -0.0034
SER 9ASP 10 -0.0003
ASP 10ASN 11 0.0047
ASN 11ALA 12 -0.0068
ALA 12THR 13 -0.0193
THR 13TYR 14 0.0044
TYR 14ALA 15 -0.1088
ALA 15SER 16 0.0520
SER 16GLU 17 -0.0068
GLU 17CYS 18 -0.0581
CYS 18ALA 19 0.0173
ALA 19MET 20 0.0003
MET 20LYS 21 -0.0072
LYS 21GLU 22 -0.0073
GLU 22ALA 23 0.0071
ALA 23ALA 24 0.0018
ALA 24CYS 25 -0.0067
CYS 25SER 26 0.0007
SER 26SER 27 0.0029
SER 27GLY 28 -0.0006
GLY 28VAL 29 0.0005
VAL 29LEU 30 -0.0020
LEU 30LEU 31 0.0013
LEU 31GLU 32 -0.0021
GLU 32VAL 33 0.0098
VAL 33LYS 34 0.0091
LYS 34HIS 35 0.0078
HIS 35SER 36 0.0313
SER 36GLY 37 -0.0065
GLY 37SER 38 0.0268
SER 38CYS 39 -0.0033
CYS 39ASN 40 -0.0016

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.