This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
0.0807
SER 2
ASP 3
-0.0195
ASP 3
GLU 4
0.2628
GLU 4
PRO 5
0.3128
PRO 5
VAL 6
0.0530
VAL 6
CYS 7
-0.0021
CYS 7
ALA 8
0.0114
ALA 8
SER 9
0.0015
SER 9
ASP 10
-0.0119
ASP 10
ASN 11
0.0121
ASN 11
ALA 12
-0.0264
ALA 12
THR 13
0.1158
THR 13
TYR 14
-0.0789
TYR 14
ALA 15
0.2328
ALA 15
SER 16
-0.1550
SER 16
GLU 17
0.0173
GLU 17
CYS 18
0.1364
CYS 18
ALA 19
0.0396
ALA 19
MET 20
-0.0188
MET 20
LYS 21
0.0367
LYS 21
GLU 22
0.0674
GLU 22
ALA 23
-0.0153
ALA 23
ALA 24
-0.0108
ALA 24
CYS 25
0.0734
CYS 25
SER 26
-0.0054
SER 26
SER 27
-0.0044
SER 27
GLY 28
0.0189
GLY 28
VAL 29
0.0350
VAL 29
LEU 30
-0.0008
LEU 30
LEU 31
-0.0108
LEU 31
GLU 32
0.0154
GLU 32
VAL 33
-0.0755
VAL 33
LYS 34
0.0350
LYS 34
HIS 35
-0.0399
HIS 35
SER 36
-0.1360
SER 36
GLY 37
-0.0042
GLY 37
SER 38
-0.0186
SER 38
CYS 39
0.1084
CYS 39
ASN 40
-0.0292
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.