CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 8  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 0.0807
SER 2ASP 3 -0.0195
ASP 3GLU 4 0.2628
GLU 4PRO 5 0.3128
PRO 5VAL 6 0.0530
VAL 6CYS 7 -0.0021
CYS 7ALA 8 0.0114
ALA 8SER 9 0.0015
SER 9ASP 10 -0.0119
ASP 10ASN 11 0.0121
ASN 11ALA 12 -0.0264
ALA 12THR 13 0.1158
THR 13TYR 14 -0.0789
TYR 14ALA 15 0.2328
ALA 15SER 16 -0.1550
SER 16GLU 17 0.0173
GLU 17CYS 18 0.1364
CYS 18ALA 19 0.0396
ALA 19MET 20 -0.0188
MET 20LYS 21 0.0367
LYS 21GLU 22 0.0674
GLU 22ALA 23 -0.0153
ALA 23ALA 24 -0.0108
ALA 24CYS 25 0.0734
CYS 25SER 26 -0.0054
SER 26SER 27 -0.0044
SER 27GLY 28 0.0189
GLY 28VAL 29 0.0350
VAL 29LEU 30 -0.0008
LEU 30LEU 31 -0.0108
LEU 31GLU 32 0.0154
GLU 32VAL 33 -0.0755
VAL 33LYS 34 0.0350
LYS 34HIS 35 -0.0399
HIS 35SER 36 -0.1360
SER 36GLY 37 -0.0042
GLY 37SER 38 -0.0186
SER 38CYS 39 0.1084
CYS 39ASN 40 -0.0292

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.