CNRS Nantes University US2B US2B
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***  EXP_5JHW_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

CA strain for 24021912411639070

---  normal mode 9  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
LYS 1SER 2 0.1423
SER 2ASP 3 -0.0943
ASP 3GLU 4 0.1273
GLU 4PRO 5 -0.0687
PRO 5VAL 6 0.1490
VAL 6CYS 7 0.0256
CYS 7ALA 8 0.0405
ALA 8SER 9 0.0224
SER 9ASP 10 0.0605
ASP 10ASN 11 -0.0141
ASN 11ALA 12 0.1125
ALA 12THR 13 -0.3426
THR 13TYR 14 0.3668
TYR 14ALA 15 -0.5668
ALA 15SER 16 0.2624
SER 16GLU 17 0.1822
GLU 17CYS 18 -0.3374
CYS 18ALA 19 0.2535
ALA 19MET 20 -0.0947
MET 20LYS 21 0.0560
LYS 21GLU 22 -0.0706
GLU 22ALA 23 0.1015
ALA 23ALA 24 0.0090
ALA 24CYS 25 -0.0537
CYS 25SER 26 -0.0251
SER 26SER 27 0.0457
SER 27GLY 28 -0.0052
GLY 28VAL 29 0.0144
VAL 29LEU 30 0.0170
LEU 30LEU 31 0.0175
LEU 31GLU 32 0.0217
GLU 32VAL 33 0.3306
VAL 33LYS 34 -0.3873
LYS 34HIS 35 0.1721
HIS 35SER 36 0.4453
SER 36GLY 37 0.0083
GLY 37SER 38 0.0339
SER 38CYS 39 -0.1694
CYS 39ASN 40 0.0891

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.