This graph displays the distance variation between successive pairs of CA atoms
in the two extreme conformations that were computed for this mode (DQMIN/DQMAX).
Large distance variations can be an indicator for residue pairs that support the
important strain in that particular normal mode movement.
Note that residue pairs between chain breaks or at flexible ends of the protein
may also exhibit large CA-CA distance variations.
If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations
between CA atoms in the same block will be very low.
This feature is still experimental and will be further developped in the future.
CA i
CA i+1
vari
LYS 1
SER 2
0.1423
SER 2
ASP 3
-0.0943
ASP 3
GLU 4
0.1273
GLU 4
PRO 5
-0.0687
PRO 5
VAL 6
0.1490
VAL 6
CYS 7
0.0256
CYS 7
ALA 8
0.0405
ALA 8
SER 9
0.0224
SER 9
ASP 10
0.0605
ASP 10
ASN 11
-0.0141
ASN 11
ALA 12
0.1125
ALA 12
THR 13
-0.3426
THR 13
TYR 14
0.3668
TYR 14
ALA 15
-0.5668
ALA 15
SER 16
0.2624
SER 16
GLU 17
0.1822
GLU 17
CYS 18
-0.3374
CYS 18
ALA 19
0.2535
ALA 19
MET 20
-0.0947
MET 20
LYS 21
0.0560
LYS 21
GLU 22
-0.0706
GLU 22
ALA 23
0.1015
ALA 23
ALA 24
0.0090
ALA 24
CYS 25
-0.0537
CYS 25
SER 26
-0.0251
SER 26
SER 27
0.0457
SER 27
GLY 28
-0.0052
GLY 28
VAL 29
0.0144
VAL 29
LEU 30
0.0170
LEU 30
LEU 31
0.0175
LEU 31
GLU 32
0.0217
GLU 32
VAL 33
0.3306
VAL 33
LYS 34
-0.3873
LYS 34
HIS 35
0.1721
HIS 35
SER 36
0.4453
SER 36
GLY 37
0.0083
GLY 37
SER 38
0.0339
SER 38
CYS 39
-0.1694
CYS 39
ASN 40
0.0891
If you find results from this site helpful for your research, please cite one of our papers:
elNémo
is maintained by Yves-Henri Sanejouand.
It was developed
by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.