Should you encounter any unexpected behaviour,
please let us know.

* 1R88_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000 *

CA strain for 240220085926145927

--- normal mode 10 ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA i CA i+1 vari
ALA 1 ALA 2 0.0000

ALA 2 PRO 3 -0.1262

PRO 3 TYR 4 -0.0000

TYR 4 GLU 5 -0.0740

GLU 5 ASN 6 0.0002

ASN 6 LEU 7 -0.1747

LEU 7 MET 8 -0.0003

MET 8 VAL 9 -0.0482

VAL 9 PRO 10 0.0001

PRO 10 SER 11 0.0936

SER 11 PRO 12 -0.0002

PRO 12 SER 13 0.0375

SER 13 MET 14 0.0003

MET 14 GLY 15 0.0687

GLY 15 ARG 16 -0.0001

ARG 16 ASP 17 -0.0234

ASP 17 ILE 18 0.0003

ILE 18 PRO 19 -0.2217

PRO 19 VAL 20 -0.0000

VAL 20 ALA 21 -0.1679

ALA 21 PHE 22 -0.0001

PHE 22 LEU 23 -0.0276

LEU 23 ALA 24 -0.0001

ALA 24 GLY 25 -0.1169

GLY 25 GLY 26 0.0002

GLY 26 PRO 27 0.0599

PRO 27 HIS 28 0.0000

HIS 28 ALA 29 -0.0566

ALA 29 VAL 30 0.0003

VAL 30 TYR 31 -0.0299

TYR 31 LEU 32 -0.0001

LEU 32 LEU 33 0.0504

LEU 33 ASP 34 -0.0002

ASP 34 ALA 35 0.0958

ALA 35 PHE 36 0.0002

PHE 36 ASN 37 0.0496

ASN 37 ALA 38 0.0002

ALA 38 GLY 39 0.1175

GLY 39 PRO 40 -0.0001

PRO 40 ASP 41 0.0478

ASP 41 VAL 42 -0.0002

VAL 42 SER 43 0.0638

SER 43 ASN 44 -0.0004

ASN 44 TRP 45 0.1187

TRP 45 VAL 46 -0.0004

VAL 46 THR 47 0.0072

THR 47 ALA 48 -0.0000

ALA 48 GLY 49 0.1040

GLY 49 ASN 50 -0.0001

ASN 50 ALA 51 0.0027

ALA 51 MET 52 0.0003

MET 52 ASN 53 0.0887

ASN 53 THR 54 0.0001

THR 54 LEU 55 -0.0789

LEU 55 ALA 56 -0.0003

ALA 56 GLY 57 0.1027

GLY 57 LYS 58 0.0001

LYS 58 GLY 59 -0.1829

GLY 59 ILE 60 -0.0002

ILE 60 SER 61 -0.0606

SER 61 VAL 62 0.0001

VAL 62 VAL 63 -0.0397

VAL 63 ALA 64 0.0002

ALA 64 PRO 65 -0.0117

PRO 65 ALA 66 0.0001

ALA 66 GLY 67 0.1360

GLY 67 GLY 68 0.0000

GLY 68 ALA 69 0.4528

ALA 69 TYR 70 0.0001

TYR 70 SER 71 0.0058

SER 71 MET 72 -0.0001

MET 72 TYR 73 0.1170

TYR 73 THR 74 0.0001

THR 74 ASN 75 -0.0971

ASN 75 TRP 76 0.0001

TRP 76 GLU 77 -0.2785

GLU 77 GLN 78 -0.0002

GLN 78 ASP 79 0.1320

ASP 79 GLY 80 0.0000

GLY 80 SER 81 -0.0011

SER 81 LYS 82 -0.0002

LYS 82 GLN 83 0.0784

GLN 83 TRP 84 -0.0001

TRP 84 ASP 85 0.0017

ASP 85 THR 86 0.0004

THR 86 PHE 87 -0.0765

PHE 87 LEU 88 -0.0000

LEU 88 SER 89 0.0285

SER 89 ALA 90 -0.0003

ALA 90 GLU 91 -0.0690

GLU 91 LEU 92 0.0004

LEU 92 PRO 93 0.0319

PRO 93 ASP 94 -0.0001

ASP 94 TRP 95 -0.0912

TRP 95 LEU 96 0.0005

LEU 96 ALA 97 -0.0166

ALA 97 ALA 98 0.0001

ALA 98 ASN 99 -0.0455

ASN 99 ARG 100 0.0001

ARG 100 GLY 101 0.0374

GLY 101 LEU 102 -0.0000

LEU 102 ALA 103 0.1043

ALA 103 PRO 104 -0.0001

PRO 104 GLY 105 -0.0636

GLY 105 GLY 106 0.0002

GLY 106 HIS 107 -0.0335

HIS 107 ALA 108 -0.0001

ALA 108 ALA 109 -0.0947

ALA 109 VAL 110 0.0001

VAL 110 GLY 111 0.0094

GLY 111 ALA 112 0.0003

ALA 112 ALA 113 0.0271

ALA 113 GLN 114 -0.0000

GLN 114 GLY 115 0.0339

GLY 115 GLY 116 -0.0001

GLY 116 TYR 117 -0.1147

TYR 117 GLY 118 -0.0000

GLY 118 ALA 119 -0.0525

ALA 119 MET 120 0.0003

MET 120 ALA 121 -0.1059

ALA 121 LEU 122 0.0002

LEU 122 ALA 123 0.0324

ALA 123 ALA 124 -0.0001

ALA 124 PHE 125 -0.0978

PHE 125 HIS 126 0.0001

HIS 126 PRO 127 -0.0523

PRO 127 ASP 128 -0.0000

ASP 128 ARG 129 0.0682

ARG 129 PHE 130 0.0001

PHE 130 GLY 131 -0.0646

GLY 131 PHE 132 -0.0002

PHE 132 ALA 133 -0.0020

ALA 133 GLY 134 0.0002

GLY 134 SER 135 -0.0527

SER 135 MET 136 0.0002

MET 136 SER 137 -0.0844

SER 137 GLY 138 0.0001

GLY 138 PHE 139 0.0336

PHE 139 LEU 140 -0.0001

LEU 140 TYR 141 0.0578

TYR 141 PRO 142 0.0001

PRO 142 SER 143 0.2984

SER 143 ASN 144 -0.0002

ASN 144 THR 145 -0.0622

THR 145 THR 146 -0.0003

THR 146 THR 147 -0.1181

THR 147 ASN 148 0.0001

ASN 148 GLY 149 -0.0176

GLY 149 ALA 150 -0.0001

ALA 150 ILE 151 0.0849

ILE 151 ALA 152 0.0001

ALA 152 ALA 153 0.1807

ALA 153 GLY 154 -0.0002

GLY 154 MET 155 0.0932

MET 155 GLN 156 -0.0000

GLN 156 GLN 157 0.1481

GLN 157 PHE 158 0.0001

PHE 158 GLY 159 0.0122

GLY 159 GLY 160 0.0003

GLY 160 VAL 161 0.0425

VAL 161 ASP 162 0.0001

ASP 162 THR 163 -0.2686

THR 163 ASN 164 -0.0000

ASN 164 GLY 165 0.1678

GLY 165 MET 166 0.0002

MET 166 TRP 167 0.0698

TRP 167 GLY 168 0.0001

GLY 168 ALA 169 -0.0622

ALA 169 PRO 170 -0.0002

PRO 170 GLN 171 0.1364

GLN 171 LEU 172 -0.0002

LEU 172 GLY 173 -0.3422

GLY 173 ARG 174 -0.0000

ARG 174 TRP 175 0.1428

TRP 175 LYS 176 0.0001

LYS 176 TRP 177 0.2963

TRP 177 HIS 178 0.0002

HIS 178 ASP 179 -0.0068

ASP 179 PRO 180 -0.0003

PRO 180 TRP 181 0.0988

TRP 181 VAL 182 -0.0001

VAL 182 HIS 183 -0.0932

HIS 183 ALA 184 -0.0001

ALA 184 SER 185 -0.0339

SER 185 LEU 186 -0.0005

LEU 186 LEU 187 -0.0727

LEU 187 ALA 188 -0.0000

ALA 188 GLN 189 0.0973

GLN 189 ASN 190 -0.0001

ASN 190 ASN 191 -0.0310

ASN 191 THR 192 0.0001

THR 192 ARG 193 0.1004

ARG 193 VAL 194 0.0002

VAL 194 TRP 195 0.1045

TRP 195 VAL 196 0.0000

VAL 196 TRP 197 -0.0226

TRP 197 SER 198 0.0000

SER 198 PRO 199 -0.0456

PRO 199 THR 200 -0.0002

THR 200 ASN 201 -0.1725

ASN 201 PRO 202 0.0002

PRO 202 GLY 203 -0.0771

GLY 203 ALA 204 0.0001

ALA 204 SER 205 0.0034

SER 205 ASP 206 0.0000

ASP 206 PRO 207 0.0729

PRO 207 ALA 208 -0.0001

ALA 208 ALA 209 0.0524

ALA 209 MET 210 -0.0002

MET 210 ILE 211 0.0239

ILE 211 GLY 212 -0.0000

GLY 212 GLN 213 -0.1599

GLN 213 ALA 214 0.0001

ALA 214 ALA 215 0.0338

ALA 215 GLU 216 0.0002

GLU 216 ALA 217 -0.0378

ALA 217 MET 218 -0.0000

MET 218 GLY 219 0.1585

GLY 219 ASN 220 -0.0005

ASN 220 SER 221 0.0011

SER 221 ARG 222 -0.0000

ARG 222 MET 223 0.3778

MET 223 PHE 224 -0.0000

PHE 224 TYR 225 -0.0349

TYR 225 ASN 226 0.0005

ASN 226 GLN 227 0.1552

GLN 227 TYR 228 -0.0002

TYR 228 ARG 229 -0.0247

ARG 229 SER 230 0.0002

SER 230 VAL 231 0.2096

VAL 231 GLY 232 -0.0001

GLY 232 GLY 233 0.0594

GLY 233 HIS 234 -0.0003

HIS 234 ASN 235 0.1558

ASN 235 GLY 236 0.0002

GLY 236 HIS 237 0.0969

HIS 237 PHE 238 0.0003

PHE 238 ASP 239 -0.0015

ASP 239 PHE 240 0.0003

PHE 240 PRO 241 0.1841

PRO 241 ALA 242 0.0001

ALA 242 SER 243 -0.1462

SER 243 GLY 244 0.0000

GLY 244 ASP 245 -0.0660

ASP 245 ASN 246 -0.0001

ASN 246 GLY 247 -0.1840

GLY 247 TRP 248 0.0004

TRP 248 GLY 249 -0.1082

GLY 249 SER 250 -0.0004

SER 250 TRP 251 -0.2069

TRP 251 ALA 252 0.0002

ALA 252 PRO 253 0.1232

PRO 253 GLN 254 0.0001

GLN 254 LEU 255 -0.3865

LEU 255 GLY 256 0.0001

GLY 256 ALA 257 0.0428

ALA 257 MET 258 -0.0001

MET 258 SER 259 -0.1557

SER 259 GLY 260 0.0003

GLY 260 ASP 261 0.3170

ASP 261 ILE 262 -0.0000

ILE 262 VAL 263 -0.0806

VAL 263 GLY 264 -0.0003

GLY 264 ALA 265 0.2147

ALA 265 ILE 266 -0.0001

ILE 266 ARG 267 0.2388

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** 1R88_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000 ***

CA strain for 240220085926145927

--- normal mode 10 ---

Should you encounter any unexpected behaviour,
please let us know.

* 1R88_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000 *