CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  1QNX_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000  ***

CA strain for 240220091312161517

---  normal mode 13  ---

This graph displays the distance variation between successive pairs of CA atoms in the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Large distance variations can be an indicator for residue pairs that support the important strain in that particular normal mode movement. Note that residue pairs between chain breaks or at flexible ends of the protein may also exhibit large CA-CA distance variations. If more than one residues ae grouped together into a rigid block (NRBL>1), CA-CA distance variations between CA atoms in the same block will be very low.

This feature is still experimental and will be further developped in the future.

CA iCA i+1vari
ALA 1GLU 2 -0.0000
GLU 2ALA 3 -0.0621
ALA 3GLU 4 0.0002
GLU 4PHE 5 0.3174
PHE 5ASN 6 -0.0002
ASN 6ASN 7 -0.0618
ASN 7TYR 8 0.0001
TYR 8CYS 9 -0.1144
CYS 9LYS 10 -0.0001
LYS 10ILE 11 0.1611
ILE 11LYS 12 0.0000
LYS 12CYS 13 0.0823
CYS 13LEU 14 -0.0000
LEU 14LYS 15 0.0683
LYS 15GLY 16 0.0002
GLY 16GLY 17 0.2101
GLY 17VAL 18 -0.0002
VAL 18HIS 19 -0.0381
HIS 19THR 20 0.0000
THR 20ALA 21 0.0803
ALA 21CYS 22 -0.0001
CYS 22LYS 23 0.0527
LYS 23TYR 24 0.0000
TYR 24GLY 25 0.2095
GLY 25SER 26 -0.0003
SER 26LEU 27 -0.0317
LEU 27LYS 28 -0.0001
LYS 28PRO 29 -0.1525
PRO 29ASN 30 -0.0001
ASN 30CYS 31 -0.2037
CYS 31GLY 32 -0.0001
GLY 32ASN 33 -0.1339
ASN 33LYS 34 -0.0001
LYS 34VAL 35 -0.0167
VAL 35VAL 36 0.0002
VAL 36VAL 37 0.1399
VAL 37SER 38 -0.0001
SER 38TYR 39 -0.1324
TYR 39GLY 40 0.0003
GLY 40LEU 41 -0.3192
LEU 41THR 42 -0.0000
THR 42LYS 43 -0.2817
LYS 43GLN 44 0.0000
GLN 44GLU 45 -0.1276
GLU 45LYS 46 -0.0001
LYS 46GLN 47 -0.1051
GLN 47ASP 48 0.0002
ASP 48ILE 49 -0.0657
ILE 49LEU 50 0.0002
LEU 50LYS 51 -0.0785
LYS 51GLU 52 -0.0002
GLU 52HIS 53 0.0736
HIS 53ASN 54 0.0002
ASN 54ASP 55 -0.0498
ASP 55PHE 56 0.0001
PHE 56ARG 57 0.0083
ARG 57GLN 58 0.0001
GLN 58LYS 59 0.0491
LYS 59ILE 60 -0.0000
ILE 60ALA 61 -0.0360
ALA 61ARG 62 -0.0000
ARG 62GLY 63 0.1470
GLY 63LEU 64 -0.0002
LEU 64GLU 65 0.0037
GLU 65THR 66 0.0004
THR 66ARG 67 0.1143
ARG 67GLY 68 -0.0002
GLY 68ASN 69 0.0352
ASN 69PRO 70 0.0000
PRO 70GLY 71 0.1945
GLY 71PRO 72 -0.0000
PRO 72GLN 73 -0.0125
GLN 73PRO 74 0.0001
PRO 74PRO 75 0.1426
PRO 75ALA 76 0.0000
ALA 76LYS 77 -0.0538
LYS 77ASN 78 0.0003
ASN 78MET 79 0.1582
MET 79LYS 80 -0.0003
LYS 80ASN 81 0.3361
ASN 81LEU 82 -0.0001
LEU 82VAL 83 0.0859
VAL 83TRP 84 -0.0001
TRP 84ASN 85 0.0052
ASN 85ASP 86 -0.0001
ASP 86GLU 87 0.0674
GLU 87LEU 88 0.0001
LEU 88ALA 89 0.0760
ALA 89TYR 90 0.0001
TYR 90VAL 91 0.0612
VAL 91ALA 92 0.0001
ALA 92GLN 93 -0.0727
GLN 93VAL 94 0.0000
VAL 94TRP 95 -0.0349
TRP 95ALA 96 0.0005
ALA 96ASN 97 -0.0497
ASN 97GLN 98 0.0004
GLN 98CYS 99 -0.0019
CYS 99GLN 100 0.0001
GLN 100TYR 101 0.0798
TYR 101GLY 102 -0.0001
GLY 102HIS 103 0.0634
HIS 103ASP 104 -0.0001
ASP 104THR 105 0.0096
THR 105CYS 106 0.0003
CYS 106ARG 107 0.0159
ARG 107ASP 108 -0.0003
ASP 108VAL 109 -0.0436
VAL 109ALA 110 -0.0002
ALA 110LYS 111 0.0022
LYS 111TYR 112 -0.0001
TYR 112GLN 113 -0.0059
GLN 113VAL 114 -0.0005
VAL 114GLY 115 -0.0856
GLY 115GLN 116 0.0003
GLN 116ASN 117 -0.0134
ASN 117VAL 118 0.0001
VAL 118ALA 119 0.2881
ALA 119LEU 120 0.0002
LEU 120THR 121 0.1123
THR 121GLY 122 -0.0002
GLY 122SER 123 0.1821
SER 123THR 124 0.0001
THR 124ALA 125 -0.0627
ALA 125ALA 126 -0.0002
ALA 126LYS 127 -0.1817
LYS 127TYR 128 0.0001
TYR 128ASP 129 -0.2089
ASP 129ASP 130 0.0001
ASP 130PRO 131 0.0521
PRO 131VAL 132 -0.0001
VAL 132LYS 133 0.1763
LYS 133LEU 134 0.0001
LEU 134VAL 135 0.2537
VAL 135LYS 136 -0.0001
LYS 136MET 137 0.1712
MET 137TRP 138 0.0003
TRP 138GLU 139 -0.1548
GLU 139ASP 140 -0.0000
ASP 140GLU 141 0.0297
GLU 141VAL 142 0.0000
VAL 142LYS 143 0.0230
LYS 143ASP 144 0.0001
ASP 144TYR 145 0.0297
TYR 145ASN 146 0.0000
ASN 146PRO 147 0.1114
PRO 147LYS 148 0.0000
LYS 148LYS 149 0.0595
LYS 149LYS 150 0.0001
LYS 150PHE 151 -0.0870
PHE 151SER 152 0.0001
SER 152GLY 153 0.0625
GLY 153ASN 154 0.0002
ASN 154ASP 155 0.1567
ASP 155PHE 156 0.0001
PHE 156LEU 157 0.0091
LEU 157LYS 158 0.0002
LYS 158THR 159 -0.0214
THR 159GLY 160 0.0001
GLY 160HIS 161 -0.2118
HIS 161TYR 162 -0.0002
TYR 162THR 163 0.0525
THR 163GLN 164 0.0001
GLN 164MET 165 -0.0180
MET 165VAL 166 -0.0003
VAL 166TRP 167 0.0347
TRP 167ALA 168 0.0000
ALA 168ASN 169 0.0683
ASN 169THR 170 0.0002
THR 170LYS 171 -0.0140
LYS 171GLU 172 0.0001
GLU 172VAL 173 0.1139
VAL 173GLY 174 0.0001
GLY 174CYS 175 0.1191
CYS 175GLY 176 0.0002
GLY 176SER 177 0.1351
SER 177ILE 178 -0.0002
ILE 178LYS 179 0.0349
LYS 179TYR 180 0.0003
TYR 180ILE 181 -0.2307
ILE 181GLN 182 -0.0000
GLN 182GLU 183 -0.2179
GLU 183LYS 184 0.0002
LYS 184TRP 185 -0.0630
TRP 185HIS 186 -0.0001
HIS 186LYS 187 0.0323
LYS 187HIS 188 0.0001
HIS 188TYR 189 0.0898
TYR 189LEU 190 -0.0001
LEU 190VAL 191 0.2026
VAL 191CYS 192 -0.0000
CYS 192ASN 193 0.1637
ASN 193TYR 194 -0.0001
TYR 194GLY 195 0.1145
GLY 195PRO 196 0.0005
PRO 196SER 197 -0.1871
SER 197GLY 198 -0.0002
GLY 198ASN 199 -0.1844
ASN 199PHE 200 0.0003
PHE 200LYS 201 -0.1693
LYS 201ASN 202 0.0000
ASN 202GLU 203 0.0484
GLU 203GLU 204 -0.0004
GLU 204LEU 205 0.0038
LEU 205TYR 206 0.0001
TYR 206GLN 207 -0.0107
GLN 207THR 208 0.0001
THR 208LYS 209 -0.0622

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.