Should you encounter any unexpected behaviour,
please let us know.

* v7t1-del5-1 *

LOGs for ID: 240125110541334525

output from eigenvector calculation:


STDOUT:

CUTOFF set to default value (CUTOFF=8)
Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 240125110541334525.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 240125110541334525.atom to be opened.

 Openam> File opened: 240125110541334525.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =     85
            First residue number     =      1
            Last  residue number     =     85
            Number of atoms found    =   2720
            Mean number per residue  =     32.0

 Pdbmat> Coordinate statistics: 
 =    48.576625 +/-    16.010303 From:     6.280000 To:    78.610000
 =    -8.542213 +/-    15.251328 From:   -44.750000 To:    21.800000
 =    98.534489 +/-    15.693958 From:    68.000000 To:   131.500000
 Pdbmat> Masses are all set to one.
%Pdbmat-W> residue:'DT5 ' is not a well known amino-acid.
%Pdbmat-W> residue:'DG  ' is not a well known amino-acid.
%Pdbmat-W> residue:'DT  ' is not a well known amino-acid.
%Pdbmat-W> residue:'DG  ' is not a well known amino-acid.
%Pdbmat-W> residue:'DG  ' is not a well known amino-acid.
%Pdbmat-W> residue:'DG  ' is not a well known amino-acid.
%Pdbmat-W> residue:'DG  ' is not a well known amino-acid.
%Pdbmat-W> residue:'DG  ' is not a well known amino-acid.
%Pdbmat-W> residue:'DT  ' is not a well known amino-acid.
%Pdbmat-W> ........

%Pdbmat-W>     85 residue(s) not known.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijb

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is   4.0103 % Filled.
 Pdbmat>      1335317  non-zero elements.
 Pdbmat>       146830 atom-atom interactions.

 Pdbmat> Number per atom=    107.96 +/-     33.67
         Maximum number =    216
         Minimum number =     18

 Pdbmat> Matrix trace   = 2.936600E+06
 Pdbmat> Larger element =  780.803    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
automatic determination of NRBL (NRBL = nresidues/200 + 1)
85 non-zero elements, NRBL set to 1
Diagonalize Tirion matrix using diagrtb
 Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
 Diagrtb> Version 2.52, November 2004. 
 Diagrtb> Options to be read in diagrtb.dat file.

 Diagrtb> Options taken into account:

 MATRix filename          = pdbmat.sdijb
 COORdinates filename     = 240125110541334525.atom
 Eigenvector OUTPut file  = matrix.eigenrtb
 Nb of VECTors required   =        106
 EigeNVALues chosen       =       LOWE
 Type of SUBStructuring   =       NONE
 Nb of residues per BLOck =          1
 Origin of MASS values    =       CONS
 MATRix FORMat            =       BINA
 Temporary files cleaning =       ALL 
 Output PRINting level    =          2

 Diagrtb> Memory allocation for Blocpdb.

 Blocpdb> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.xyzm   

 Blocpdb> Coordinate file 240125110541334525.atom to be opened.

 Openam> file on opening on unit     11:
 240125110541334525.atom                                                                                                         

 Blocpdb> Coordinate file in PDB format.

 Blocpdb>  2720 atoms picked in pdb file.
 Blocpdb>   All masses set to unity.
 Blocpdb> Coordinate file is rewritten.

 Blocpdb> Substructuring:
 Blocpdb>     1 residue(s) per block.
 Blocpdb>    85 residues.
 Blocpdb>    30 atoms in block      1
 Block first atom:      1
 Blocpdb>    33 atoms in block      2
 Block first atom:     31
 Blocpdb>    32 atoms in block      3
 Block first atom:     64
 Blocpdb>    33 atoms in block      4
 Block first atom:     96
 Blocpdb>    33 atoms in block      5
 Block first atom:    129
 Blocpdb>    33 atoms in block      6
 Block first atom:    162
 Blocpdb>    33 atoms in block      7
 Block first atom:    195
 Blocpdb>    33 atoms in block      8
 Block first atom:    228
 Blocpdb>    32 atoms in block      9
 Block first atom:    261
 Blocpdb>    33 atoms in block     10
 Block first atom:    293
 Blocpdb>    33 atoms in block     11
 Block first atom:    326
 Blocpdb>    32 atoms in block     12
 Block first atom:    359
 Blocpdb>    30 atoms in block     13
 Block first atom:    391
 Blocpdb>    33 atoms in block     14
 Block first atom:    421
 Blocpdb>    33 atoms in block     15
 Block first atom:    454
 Blocpdb>    33 atoms in block     16
 Block first atom:    487
 Blocpdb>    30 atoms in block     17
 Block first atom:    520
 Blocpdb>    30 atoms in block     18
 Block first atom:    550
 Blocpdb>    33 atoms in block     19
 Block first atom:    580
 Blocpdb>    33 atoms in block     20
 Block first atom:    613
 Blocpdb>    33 atoms in block     21
 Block first atom:    646
 Blocpdb>    32 atoms in block     22
 Block first atom:    679
 Blocpdb>    32 atoms in block     23
 Block first atom:    711
 Blocpdb>    33 atoms in block     24
 Block first atom:    743
 Blocpdb>    32 atoms in block     25
 Block first atom:    776
 Blocpdb>    32 atoms in block     26
 Block first atom:    808
 Blocpdb>    32 atoms in block     27
 Block first atom:    840
 Blocpdb>    32 atoms in block     28
 Block first atom:    872
 Blocpdb>    32 atoms in block     29
 Block first atom:    904
 Blocpdb>    32 atoms in block     30
 Block first atom:    936
 Blocpdb>    32 atoms in block     31
 Block first atom:    968
 Blocpdb>    32 atoms in block     32
 Block first atom:   1000
 Blocpdb>    32 atoms in block     33
 Block first atom:   1032
 Blocpdb>    32 atoms in block     34
 Block first atom:   1064
 Blocpdb>    32 atoms in block     35
 Block first atom:   1096
 Blocpdb>    32 atoms in block     36
 Block first atom:   1128
 Blocpdb>    32 atoms in block     37
 Block first atom:   1160
 Blocpdb>    32 atoms in block     38
 Block first atom:   1192
 Blocpdb>    30 atoms in block     39
 Block first atom:   1224
 Blocpdb>    30 atoms in block     40
 Block first atom:   1254
 Blocpdb>    32 atoms in block     41
 Block first atom:   1284
 Blocpdb>    33 atoms in block     42
 Block first atom:   1316
 Blocpdb>    32 atoms in block     43
 Block first atom:   1349
 Blocpdb>    30 atoms in block     44
 Block first atom:   1381
 Blocpdb>    32 atoms in block     45
 Block first atom:   1411
 Blocpdb>    32 atoms in block     46
 Block first atom:   1443
 Blocpdb>    32 atoms in block     47
 Block first atom:   1475
 Blocpdb>    32 atoms in block     48
 Block first atom:   1507
 Blocpdb>    30 atoms in block     49
 Block first atom:   1539
 Blocpdb>    32 atoms in block     50
 Block first atom:   1569
 Blocpdb>    32 atoms in block     51
 Block first atom:   1601
 Blocpdb>    32 atoms in block     52
 Block first atom:   1633
 Blocpdb>    32 atoms in block     53
 Block first atom:   1665
 Blocpdb>    33 atoms in block     54
 Block first atom:   1697
 Blocpdb>    33 atoms in block     55
 Block first atom:   1730
 Blocpdb>    33 atoms in block     56
 Block first atom:   1763
 Blocpdb>    30 atoms in block     57
 Block first atom:   1796
 Blocpdb>    30 atoms in block     58
 Block first atom:   1826
 Blocpdb>    30 atoms in block     59
 Block first atom:   1856
 Blocpdb>    33 atoms in block     60
 Block first atom:   1886
 Blocpdb>    32 atoms in block     61
 Block first atom:   1919
 Blocpdb>    30 atoms in block     62
 Block first atom:   1951
 Blocpdb>    30 atoms in block     63
 Block first atom:   1981
 Blocpdb>    33 atoms in block     64
 Block first atom:   2011
 Blocpdb>    32 atoms in block     65
 Block first atom:   2044
 Blocpdb>    32 atoms in block     66
 Block first atom:   2076
 Blocpdb>    32 atoms in block     67
 Block first atom:   2108
 Blocpdb>    33 atoms in block     68
 Block first atom:   2140
 Blocpdb>    33 atoms in block     69
 Block first atom:   2173
 Blocpdb>    32 atoms in block     70
 Block first atom:   2206
 Blocpdb>    33 atoms in block     71
 Block first atom:   2238
 Blocpdb>    33 atoms in block     72
 Block first atom:   2271
 Blocpdb>    33 atoms in block     73
 Block first atom:   2304
 Blocpdb>    32 atoms in block     74
 Block first atom:   2337
 Blocpdb>    33 atoms in block     75
 Block first atom:   2369
 Blocpdb>    32 atoms in block     76
 Block first atom:   2402
 Blocpdb>    33 atoms in block     77
 Block first atom:   2434
 Blocpdb>    30 atoms in block     78
 Block first atom:   2467
 Blocpdb>    32 atoms in block     79
 Block first atom:   2497
 Blocpdb>    33 atoms in block     80
 Block first atom:   2529
 Blocpdb>    33 atoms in block     81
 Block first atom:   2562
 Blocpdb>    30 atoms in block     82
 Block first atom:   2595
 Blocpdb>    30 atoms in block     83
 Block first atom:   2625
 Blocpdb>    32 atoms in block     84
 Block first atom:   2655
 Blocpdb>    34 atoms in block     85
 Block first atom:   2686

 Blocpdb>    85 blocks.

 Blocpdb> At most,     34 atoms in each of them.
 Blocpdb> At least,    30 atoms in each of them.

 Blocpdb> Normal end of Blocpdb.

 Diagrtb> Memory allocation for Prepmat.
 Diagrtb> Memory allocation for RTB.
 Diagrtb> Memory allocation for Diagstd.
 Diagrtb> Memory allocation for RTB_to_modes.

 Prepmat> Entering in.
 Prepmat> Rewriting of the matrix begins.

 Prepmat>      1335402 matrix lines read.

 Prepmat> Matrix order    =       8160

 Prepmat> Matrix trace    =    2936600.0000
 Prepmat> Last element read:    8160   8160       408.8674
 Prepmat>         3656 lines saved.
 Prepmat>         3115 empty lines.
 Prepmat> Number of lines on output is as expected.
 Prepmat> Normal end of Prepmat.

 RTB> Entering in.
 RTB> Number of atoms found in temporary coordinate file:  2720
 RTB> Total mass =        2720.0000
 RTB> Number of atoms found in matrix:  2720
 RTB> Number of blocks =    85
 RTB> Projection begins.
 RTB> Projected matrix is being saved.
 RTB> Projected matrix trace =  140192.7384
 RTB>     18165 non-zero elements.
 RTB> Normal end of RTB.

 Diagstd> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.sdijb                      
 Diagstd> Projected matrix to be read from file: diagrtb_work.sdijb                      
 Diagstd> CERFACS matrix format.
 Diagstd> Projected matrix order =      510
 Diagstd> Nb of non-zero elements:    18165
 Diagstd> Projected matrix trace =  140192.7384

 Openam> file on opening on unit     11:
 diagrtb_work.eigenfacs                  
 Diagstd> Diagonalization.

 Diagstd>    510 eigenvectors are computed. 
 Diagstd>    106 of them to be saved. 

 Diagstd> Sum of eigenvalues = 140192.7384
 Diagstd> Best zero-eigenvalue found  :     0.000000

 Diagstd>      6 zero-eigenvalues, that is, below or equal to:    0.0000000

 Diagstd> Selected eigenvalues: 
      0.0000000      0.0000000      0.0000000      0.0000000      0.0000000
      0.0000000      0.0176545      0.0217059      0.0578226      0.1095172
      0.2499329      0.2944242      0.3739336      0.5673419      0.7323891
      0.9689493      1.3527560      1.5059250      2.0260249      2.3859718
      2.9167286      3.6642864      4.4148662      5.7016279      7.4637010
      7.8431212      8.2987625      8.9131031      9.9125748     10.1595987
     11.8299928     12.6355999     12.9799411     14.7771375     15.2917994
     18.9680562     19.9691966     21.2366431     21.8499454     23.1196719
     23.1631729     23.8021638     25.8322336     28.2092249     28.9665177
     29.5897323     30.0798223     31.2058972     33.4686177     33.8747074
     36.2992161     38.2169083     38.8189001     39.2983090     41.2953180
     42.6921024     44.0729808     45.5195730     46.1001812     47.3537957
     48.0032940     48.3432385     49.6245899     50.7733455     51.9983425
     53.4774101     55.2176066     56.6051983     58.1503457     59.2727323
     61.7000646     62.2273804     64.7664264     64.9274866     66.7048244
     67.8072599     68.3624968     69.8484900     71.4093836     72.3745578
     73.0576332     76.4923527     76.9276233     78.8144428     80.0277535
     81.0330665     81.8740702     83.6603255     84.3612404     85.0879405
     85.6524634     86.0208951     87.7169672     88.4474015     91.7444402
     93.0353983     93.1908621     93.4518600     95.2117240     96.6247151
     96.8478533     98.4937159     99.1917837    100.6288070    102.1574131
    102.3662745

 Diagstd> Frequencies (cm-1, if the input matrix is a hessian in CHARMM units):
      0.0034330      0.0034332      0.0034335      0.0034339      0.0034340
      0.0034352     14.4285472     15.9986953     26.1122434     35.9365554
     54.2883987     58.9226155     66.4037413     81.7932997     92.9321994
    106.8921510    126.3004824    133.2591238    154.5673187    167.7366364
    185.4570262    207.8691238    228.1676425    259.2953414    296.6691568
    304.1163320    312.8253560    324.1975634    341.8916700    346.1254689
    373.4973460    386.0052509    391.2295416    417.4365157    424.6435941
    472.9407041    485.2612103    500.4240973    507.5986501    522.1389768
    522.6299625    529.7896869    551.9201628    576.7543213    584.4446997
    590.6984051    595.5701368    606.6156593    628.2234854    632.0232530
    654.2502597    671.3099058    676.5764751    680.7414761    697.8236559
    709.5272045    720.9107343    732.6463154    737.3040108    747.2616222
    752.3688390    755.0281612    764.9688408    773.7722859    783.0509670
    794.1096313    806.9266695    817.0025996    828.0783509    836.0317175
    852.9785103    856.6157192    873.9171211    875.0030685    886.8984641
    894.1973482    897.8509330    907.5567502    917.6412384    923.8218758
    928.1711808    949.7390385    952.4373933    964.0469502    971.4391303
    977.5217230    982.5812464    993.2419534    997.3940171   1001.6806541
   1004.9980269   1007.1571933   1017.0377757   1021.2635207   1040.1240965
   1047.4164511   1048.2912120   1049.7581504   1059.5964505   1067.4299733
   1068.6617854   1077.7041159   1081.5164520   1089.3224199   1097.5649347
   1098.6863509

 Diagstd> Normal end.

 Rtb_to_modes> Entering in.

 Rtb_to_modes> Number of atoms in temporary block-file =   2720
 Rtb_to_modes> Number of blocs =     85

 Openam> file on opening on unit     10:
 diagrtb_work.eigenfacs                  

 Openam> file on opening on unit     11:
 matrix.eigenrtb                         

 Rdmodfacs> Entering in.

 Rdmodfacs> Old Blzpack file format detected.

 Rdmodfacs> Eigenvector number:     1
 Rdmodfacs> Corresponding eigenvalue:  9.9942E-10

 Rdmodfacs> Eigenvector number:     2
 Rdmodfacs> Corresponding eigenvalue:  9.9958E-10

 Rdmodfacs> Eigenvector number:     3
 Rdmodfacs> Corresponding eigenvalue:  9.9971E-10

 Rdmodfacs> Eigenvector number:     4
 Rdmodfacs> Corresponding eigenvalue:  9.9995E-10

 Rdmodfacs> Eigenvector number:     5
 Rdmodfacs> Corresponding eigenvalue:  1.0000E-09

 Rdmodfacs> Eigenvector number:     6
 Rdmodfacs> Corresponding eigenvalue:  1.0007E-09

 Rdmodfacs> Eigenvector number:     7
 Rdmodfacs> Corresponding eigenvalue:  1.7654E-02

 Rdmodfacs> Eigenvector number:     8
 Rdmodfacs> Corresponding eigenvalue:  2.1706E-02

 Rdmodfacs> Eigenvector number:     9
 Rdmodfacs> Corresponding eigenvalue:  5.7823E-02

 Rdmodfacs> Eigenvector number:    10
 Rdmodfacs> Corresponding eigenvalue:  0.1095    

 Rdmodfacs> Eigenvector number:    11
 Rdmodfacs> Corresponding eigenvalue:  0.2499    

 Rdmodfacs> Eigenvector number:    12
 Rdmodfacs> Corresponding eigenvalue:  0.2944    

 Rdmodfacs> Eigenvector number:    13
 Rdmodfacs> Corresponding eigenvalue:  0.3739    

 Rdmodfacs> Eigenvector number:    14
 Rdmodfacs> Corresponding eigenvalue:  0.5673    

 Rdmodfacs> Eigenvector number:    15
 Rdmodfacs> Corresponding eigenvalue:  0.7324    

 Rdmodfacs> Eigenvector number:    16
 Rdmodfacs> Corresponding eigenvalue:  0.9689    

 Rdmodfacs> Eigenvector number:    17
 Rdmodfacs> Corresponding eigenvalue:   1.353    

 Rdmodfacs> Eigenvector number:    18
 Rdmodfacs> Corresponding eigenvalue:   1.506    

 Rdmodfacs> Eigenvector number:    19
 Rdmodfacs> Corresponding eigenvalue:   2.026    

 Rdmodfacs> Eigenvector number:    20
 Rdmodfacs> Corresponding eigenvalue:   2.386    

 Rdmodfacs> Eigenvector number:    21
 Rdmodfacs> Corresponding eigenvalue:   2.917    

 Rdmodfacs> Eigenvector number:    22
 Rdmodfacs> Corresponding eigenvalue:   3.664    

 Rdmodfacs> Eigenvector number:    23
 Rdmodfacs> Corresponding eigenvalue:   4.415    

 Rdmodfacs> Eigenvector number:    24
 Rdmodfacs> Corresponding eigenvalue:   5.702    

 Rdmodfacs> Eigenvector number:    25
 Rdmodfacs> Corresponding eigenvalue:   7.464    

 Rdmodfacs> Eigenvector number:    26
 Rdmodfacs> Corresponding eigenvalue:   7.843    

 Rdmodfacs> Eigenvector number:    27
 Rdmodfacs> Corresponding eigenvalue:   8.299    

 Rdmodfacs> Eigenvector number:    28
 Rdmodfacs> Corresponding eigenvalue:   8.913    

 Rdmodfacs> Eigenvector number:    29
 Rdmodfacs> Corresponding eigenvalue:   9.913    

 Rdmodfacs> Eigenvector number:    30
 Rdmodfacs> Corresponding eigenvalue:   10.16    

 Rdmodfacs> Eigenvector number:    31
 Rdmodfacs> Corresponding eigenvalue:   11.83    

 Rdmodfacs> Eigenvector number:    32
 Rdmodfacs> Corresponding eigenvalue:   12.64    

 Rdmodfacs> Eigenvector number:    33
 Rdmodfacs> Corresponding eigenvalue:   12.98    

 Rdmodfacs> Eigenvector number:    34
 Rdmodfacs> Corresponding eigenvalue:   14.78    

 Rdmodfacs> Eigenvector number:    35
 Rdmodfacs> Corresponding eigenvalue:   15.29    

 Rdmodfacs> Eigenvector number:    36
 Rdmodfacs> Corresponding eigenvalue:   18.97    

 Rdmodfacs> Eigenvector number:    37
 Rdmodfacs> Corresponding eigenvalue:   19.97    

 Rdmodfacs> Eigenvector number:    38
 Rdmodfacs> Corresponding eigenvalue:   21.24    

 Rdmodfacs> Eigenvector number:    39
 Rdmodfacs> Corresponding eigenvalue:   21.85    

 Rdmodfacs> Eigenvector number:    40
 Rdmodfacs> Corresponding eigenvalue:   23.12    

 Rdmodfacs> Eigenvector number:    41
 Rdmodfacs> Corresponding eigenvalue:   23.16    

 Rdmodfacs> Eigenvector number:    42
 Rdmodfacs> Corresponding eigenvalue:   23.80    

 Rdmodfacs> Eigenvector number:    43
 Rdmodfacs> Corresponding eigenvalue:   25.83    

 Rdmodfacs> Eigenvector number:    44
 Rdmodfacs> Corresponding eigenvalue:   28.21    

 Rdmodfacs> Eigenvector number:    45
 Rdmodfacs> Corresponding eigenvalue:   28.97    

 Rdmodfacs> Eigenvector number:    46
 Rdmodfacs> Corresponding eigenvalue:   29.59    

 Rdmodfacs> Eigenvector number:    47
 Rdmodfacs> Corresponding eigenvalue:   30.08    

 Rdmodfacs> Eigenvector number:    48
 Rdmodfacs> Corresponding eigenvalue:   31.21    

 Rdmodfacs> Eigenvector number:    49
 Rdmodfacs> Corresponding eigenvalue:   33.47    

 Rdmodfacs> Eigenvector number:    50
 Rdmodfacs> Corresponding eigenvalue:   33.87    

 Rdmodfacs> Eigenvector number:    51
 Rdmodfacs> Corresponding eigenvalue:   36.30    

 Rdmodfacs> Eigenvector number:    52
 Rdmodfacs> Corresponding eigenvalue:   38.22    

 Rdmodfacs> Eigenvector number:    53
 Rdmodfacs> Corresponding eigenvalue:   38.82    

 Rdmodfacs> Eigenvector number:    54
 Rdmodfacs> Corresponding eigenvalue:   39.30    

 Rdmodfacs> Eigenvector number:    55
 Rdmodfacs> Corresponding eigenvalue:   41.30    

 Rdmodfacs> Eigenvector number:    56
 Rdmodfacs> Corresponding eigenvalue:   42.69    

 Rdmodfacs> Eigenvector number:    57
 Rdmodfacs> Corresponding eigenvalue:   44.07    

 Rdmodfacs> Eigenvector number:    58
 Rdmodfacs> Corresponding eigenvalue:   45.52    

 Rdmodfacs> Eigenvector number:    59
 Rdmodfacs> Corresponding eigenvalue:   46.10    

 Rdmodfacs> Eigenvector number:    60
 Rdmodfacs> Corresponding eigenvalue:   47.35    

 Rdmodfacs> Eigenvector number:    61
 Rdmodfacs> Corresponding eigenvalue:   48.00    

 Rdmodfacs> Eigenvector number:    62
 Rdmodfacs> Corresponding eigenvalue:   48.34    

 Rdmodfacs> Eigenvector number:    63
 Rdmodfacs> Corresponding eigenvalue:   49.62    

 Rdmodfacs> Eigenvector number:    64
 Rdmodfacs> Corresponding eigenvalue:   50.77    

 Rdmodfacs> Eigenvector number:    65
 Rdmodfacs> Corresponding eigenvalue:   52.00    

 Rdmodfacs> Eigenvector number:    66
 Rdmodfacs> Corresponding eigenvalue:   53.48    

 Rdmodfacs> Eigenvector number:    67
 Rdmodfacs> Corresponding eigenvalue:   55.22    

 Rdmodfacs> Eigenvector number:    68
 Rdmodfacs> Corresponding eigenvalue:   56.61    

 Rdmodfacs> Eigenvector number:    69
 Rdmodfacs> Corresponding eigenvalue:   58.15    

 Rdmodfacs> Eigenvector number:    70
 Rdmodfacs> Corresponding eigenvalue:   59.27    

 Rdmodfacs> Eigenvector number:    71
 Rdmodfacs> Corresponding eigenvalue:   61.70    

 Rdmodfacs> Eigenvector number:    72
 Rdmodfacs> Corresponding eigenvalue:   62.23    

 Rdmodfacs> Eigenvector number:    73
 Rdmodfacs> Corresponding eigenvalue:   64.77    

 Rdmodfacs> Eigenvector number:    74
 Rdmodfacs> Corresponding eigenvalue:   64.93    

 Rdmodfacs> Eigenvector number:    75
 Rdmodfacs> Corresponding eigenvalue:   66.70    

 Rdmodfacs> Eigenvector number:    76
 Rdmodfacs> Corresponding eigenvalue:   67.81    

 Rdmodfacs> Eigenvector number:    77
 Rdmodfacs> Corresponding eigenvalue:   68.36    

 Rdmodfacs> Eigenvector number:    78
 Rdmodfacs> Corresponding eigenvalue:   69.85    

 Rdmodfacs> Eigenvector number:    79
 Rdmodfacs> Corresponding eigenvalue:   71.41    

 Rdmodfacs> Eigenvector number:    80
 Rdmodfacs> Corresponding eigenvalue:   72.37    

 Rdmodfacs> Eigenvector number:    81
 Rdmodfacs> Corresponding eigenvalue:   73.06    

 Rdmodfacs> Eigenvector number:    82
 Rdmodfacs> Corresponding eigenvalue:   76.49    

 Rdmodfacs> Eigenvector number:    83
 Rdmodfacs> Corresponding eigenvalue:   76.93    

 Rdmodfacs> Eigenvector number:    84
 Rdmodfacs> Corresponding eigenvalue:   78.81    

 Rdmodfacs> Eigenvector number:    85
 Rdmodfacs> Corresponding eigenvalue:   80.03    

 Rdmodfacs> Eigenvector number:    86
 Rdmodfacs> Corresponding eigenvalue:   81.03    

 Rdmodfacs> Eigenvector number:    87
 Rdmodfacs> Corresponding eigenvalue:   81.87    

 Rdmodfacs> Eigenvector number:    88
 Rdmodfacs> Corresponding eigenvalue:   83.66    

 Rdmodfacs> Eigenvector number:    89
 Rdmodfacs> Corresponding eigenvalue:   84.36    

 Rdmodfacs> Eigenvector number:    90
 Rdmodfacs> Corresponding eigenvalue:   85.09    

 Rdmodfacs> Eigenvector number:    91
 Rdmodfacs> Corresponding eigenvalue:   85.65    

 Rdmodfacs> Eigenvector number:    92
 Rdmodfacs> Corresponding eigenvalue:   86.02    

 Rdmodfacs> Eigenvector number:    93
 Rdmodfacs> Corresponding eigenvalue:   87.72    

 Rdmodfacs> Eigenvector number:    94
 Rdmodfacs> Corresponding eigenvalue:   88.45    

 Rdmodfacs> Eigenvector number:    95
 Rdmodfacs> Corresponding eigenvalue:   91.74    

 Rdmodfacs> Eigenvector number:    96
 Rdmodfacs> Corresponding eigenvalue:   93.04    

 Rdmodfacs> Eigenvector number:    97
 Rdmodfacs> Corresponding eigenvalue:   93.19    

 Rdmodfacs> Eigenvector number:    98
 Rdmodfacs> Corresponding eigenvalue:   93.45    

 Rdmodfacs> Eigenvector number:    99
 Rdmodfacs> Corresponding eigenvalue:   95.21    

 Rdmodfacs> Eigenvector number:   100
 Rdmodfacs> Corresponding eigenvalue:   96.62    

 Rdmodfacs> Eigenvector number:   101
 Rdmodfacs> Corresponding eigenvalue:   96.85    

 Rdmodfacs> Eigenvector number:   102
 Rdmodfacs> Corresponding eigenvalue:   98.49    

 Rdmodfacs> Eigenvector number:   103
 Rdmodfacs> Corresponding eigenvalue:   99.19    

 Rdmodfacs> Eigenvector number:   104
 Rdmodfacs> Corresponding eigenvalue:   100.6    

 Rdmodfacs> Eigenvector number:   105
 Rdmodfacs> Corresponding eigenvalue:   102.2    

 Rdmodfacs> Eigenvector number:   106
 Rdmodfacs> Corresponding eigenvalue:   102.4    

 Rtb_to_modes>  106 vectors, with    510 coordinates in vector file.

 Norm of eigenvectors in projected coordinates (one expected):
 1.00001 1.00000 1.00000 0.99999 1.00002
 0.99999 1.00000 0.99997 0.99999 1.00001
 1.00003 1.00000 0.99998 0.99999 1.00000
 0.99999 0.99995 0.99999 0.99999 0.99996
 1.00002 1.00000 0.99997 1.00004 0.99999
 1.00002 1.00000 0.99998 1.00000 1.00001
 0.99996 0.99998 1.00001 1.00000 1.00000
 1.00005 0.99997 1.00003 0.99995 0.99998
 1.00000 0.99995 0.99997 1.00001 0.99998
 0.99999 1.00003 0.99998 1.00002 0.99997
 1.00000 1.00001 1.00000 1.00004 0.99996
 1.00003 0.99998 1.00000 0.99997 0.99999
 1.00001 1.00001 0.99997 0.99998 0.99997
 1.00002 1.00002 1.00001 1.00004 0.99998
 0.99999 1.00000 1.00002 0.99998 1.00001
 0.99997 1.00002 0.99999 0.99995 0.99997
 1.00001 0.99998 1.00002 1.00001 1.00000
 1.00002 0.99998 1.00000 1.00001 1.00001
 1.00002 1.00001 1.00002 0.99998 1.00004
 0.99997 0.99999 0.99999 1.00000 0.99998
 0.99999 0.99997 1.00000 0.99999 0.99997
 0.99996

 Rtb_to_modes> RTB block-file is being read.
 Rtb_to_modes>    48960 lines found in RTB file.

 Norm of eigenvectors in cartesian coordinates (one expected):
 1.00001 1.00000 1.00000 0.99999 1.00002
 0.99999 1.00000 0.99997 0.99999 1.00001
 1.00003 1.00000 0.99998 0.99999 1.00000
 0.99999 0.99995 0.99999 0.99999 0.99996
 1.00002 1.00000 0.99997 1.00004 0.99999
 1.00002 1.00000 0.99998 1.00000 1.00001
 0.99996 0.99998 1.00001 1.00000 1.00000
 1.00005 0.99997 1.00003 0.99995 0.99998
 1.00000 0.99995 0.99997 1.00001 0.99998
 0.99999 1.00003 0.99998 1.00002 0.99997
 1.00000 1.00001 1.00000 1.00004 0.99996
 1.00003 0.99998 1.00000 0.99997 0.99999
 1.00001 1.00001 0.99997 0.99998 0.99997
 1.00002 1.00002 1.00001 1.00004 0.99998
 0.99999 1.00000 1.00002 0.99998 1.00001
 0.99997 1.00002 0.99999 0.99995 0.99997
 1.00001 0.99998 1.00002 1.00001 1.00000
 1.00002 0.99998 1.00000 1.00001 1.00001
 1.00002 1.00001 1.00002 0.99998 1.00004
 0.99997 0.99999 0.99999 1.00000 0.99998
 0.99999 0.99997 1.00000 0.99999 0.99997
 0.99996

 Orthogonality of first eigenvectors (zero expected):
 Vector   2:-0.000
 Vector   3:-0.000 0.000
 Vector   4: 0.000-0.000 0.000
 Vector   5:-0.000 0.000 0.000 0.000
 Vector   6: 0.000 0.000-0.000-0.000-0.000
 Vector   7:-0.000-0.000 0.000-0.000-0.000-0.000
 Vector   8: 0.000 0.000 0.000 0.000-0.000 0.000-0.000
 Vector   9:-0.000 0.000-0.000 0.000 0.000-0.000 0.000 0.000
 Vector  10: 0.000 0.000-0.000 0.000-0.000-0.000 0.000-0.000 0.000

 Rtb_to_modes>   106 eigenvectors saved.

 Rtb_to_modes> Normal end.

 Diagrtb> Normal end.
B-factor analysis
 Bfactors> Version 1.22, Bordeaux.                
 Getnam> Eigenvector filename ?
 Getnam> 240125110541334525.eigenfacs

 Openam> file on opening on unit     10:
 240125110541334525.eigenfacs                                    
 Getnam> Corresponding pdb filename ?
 Getnam> 240125110541334525.atom

 Openam> file on opening on unit     11:
 240125110541334525.atom                                         
 Getnum> Number of skipped eigenvectors ?
 Getnum>            0
 Getnum> Number of usefull eigenvectors ?
 Getnum>        10000
%Getnum-Err: number larger than    106 This is not allowed. Sorry.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:            0

 Rdatompdb> Number of residues found =     85
            First residue number     =      1
            Last  residue number     =     85
            Number of atoms found    =   2720
            Mean number per residue  =     32.0

 Rdmodfacs> Old Blzpack file format detected.

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     1
 Rdmodfacs> Valeur propre du vecteur en lecture:  9.9942E-10

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     2
 Rdmodfacs> Valeur propre du vecteur en lecture:  9.9958E-10

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     3
 Rdmodfacs> Valeur propre du vecteur en lecture:  9.9971E-10

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     4
 Rdmodfacs> Valeur propre du vecteur en lecture:  9.9995E-10

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     5
 Rdmodfacs> Valeur propre du vecteur en lecture:  1.0000E-09

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     6
 Rdmodfacs> Valeur propre du vecteur en lecture:  1.0007E-09

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     7
 Rdmodfacs> Valeur propre du vecteur en lecture:  1.7654E-02

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     8
 Rdmodfacs> Valeur propre du vecteur en lecture:  2.1706E-02

 Rdmodfacs> Numero du vecteur CERFACS en lecture:     9
 Rdmodfacs> Valeur propre du vecteur en lecture:  5.7823E-02

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    10
 Rdmodfacs> Valeur propre du vecteur en lecture:  0.1095    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    11
 Rdmodfacs> Valeur propre du vecteur en lecture:  0.2499    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    12
 Rdmodfacs> Valeur propre du vecteur en lecture:  0.2944    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    13
 Rdmodfacs> Valeur propre du vecteur en lecture:  0.3739    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    14
 Rdmodfacs> Valeur propre du vecteur en lecture:  0.5673    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    15
 Rdmodfacs> Valeur propre du vecteur en lecture:  0.7324    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    16
 Rdmodfacs> Valeur propre du vecteur en lecture:  0.9689    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    17
 Rdmodfacs> Valeur propre du vecteur en lecture:   1.353    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    18
 Rdmodfacs> Valeur propre du vecteur en lecture:   1.506    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    19
 Rdmodfacs> Valeur propre du vecteur en lecture:   2.026    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    20
 Rdmodfacs> Valeur propre du vecteur en lecture:   2.386    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    21
 Rdmodfacs> Valeur propre du vecteur en lecture:   2.917    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    22
 Rdmodfacs> Valeur propre du vecteur en lecture:   3.664    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    23
 Rdmodfacs> Valeur propre du vecteur en lecture:   4.415    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    24
 Rdmodfacs> Valeur propre du vecteur en lecture:   5.702    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    25
 Rdmodfacs> Valeur propre du vecteur en lecture:   7.464    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    26
 Rdmodfacs> Valeur propre du vecteur en lecture:   7.843    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    27
 Rdmodfacs> Valeur propre du vecteur en lecture:   8.299    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    28
 Rdmodfacs> Valeur propre du vecteur en lecture:   8.913    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    29
 Rdmodfacs> Valeur propre du vecteur en lecture:   9.913    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    30
 Rdmodfacs> Valeur propre du vecteur en lecture:   10.16    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    31
 Rdmodfacs> Valeur propre du vecteur en lecture:   11.83    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    32
 Rdmodfacs> Valeur propre du vecteur en lecture:   12.64    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    33
 Rdmodfacs> Valeur propre du vecteur en lecture:   12.98    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    34
 Rdmodfacs> Valeur propre du vecteur en lecture:   14.78    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    35
 Rdmodfacs> Valeur propre du vecteur en lecture:   15.29    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    36
 Rdmodfacs> Valeur propre du vecteur en lecture:   18.97    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    37
 Rdmodfacs> Valeur propre du vecteur en lecture:   19.97    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    38
 Rdmodfacs> Valeur propre du vecteur en lecture:   21.24    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    39
 Rdmodfacs> Valeur propre du vecteur en lecture:   21.85    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    40
 Rdmodfacs> Valeur propre du vecteur en lecture:   23.12    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    41
 Rdmodfacs> Valeur propre du vecteur en lecture:   23.16    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    42
 Rdmodfacs> Valeur propre du vecteur en lecture:   23.80    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    43
 Rdmodfacs> Valeur propre du vecteur en lecture:   25.83    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    44
 Rdmodfacs> Valeur propre du vecteur en lecture:   28.21    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    45
 Rdmodfacs> Valeur propre du vecteur en lecture:   28.97    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    46
 Rdmodfacs> Valeur propre du vecteur en lecture:   29.59    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    47
 Rdmodfacs> Valeur propre du vecteur en lecture:   30.08    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    48
 Rdmodfacs> Valeur propre du vecteur en lecture:   31.21    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    49
 Rdmodfacs> Valeur propre du vecteur en lecture:   33.47    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    50
 Rdmodfacs> Valeur propre du vecteur en lecture:   33.87    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    51
 Rdmodfacs> Valeur propre du vecteur en lecture:   36.30    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    52
 Rdmodfacs> Valeur propre du vecteur en lecture:   38.22    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    53
 Rdmodfacs> Valeur propre du vecteur en lecture:   38.82    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    54
 Rdmodfacs> Valeur propre du vecteur en lecture:   39.30    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    55
 Rdmodfacs> Valeur propre du vecteur en lecture:   41.30    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    56
 Rdmodfacs> Valeur propre du vecteur en lecture:   42.69    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    57
 Rdmodfacs> Valeur propre du vecteur en lecture:   44.07    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    58
 Rdmodfacs> Valeur propre du vecteur en lecture:   45.52    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    59
 Rdmodfacs> Valeur propre du vecteur en lecture:   46.10    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    60
 Rdmodfacs> Valeur propre du vecteur en lecture:   47.35    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    61
 Rdmodfacs> Valeur propre du vecteur en lecture:   48.00    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    62
 Rdmodfacs> Valeur propre du vecteur en lecture:   48.34    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    63
 Rdmodfacs> Valeur propre du vecteur en lecture:   49.62    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    64
 Rdmodfacs> Valeur propre du vecteur en lecture:   50.77    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    65
 Rdmodfacs> Valeur propre du vecteur en lecture:   52.00    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    66
 Rdmodfacs> Valeur propre du vecteur en lecture:   53.48    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    67
 Rdmodfacs> Valeur propre du vecteur en lecture:   55.22    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    68
 Rdmodfacs> Valeur propre du vecteur en lecture:   56.61    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    69
 Rdmodfacs> Valeur propre du vecteur en lecture:   58.15    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    70
 Rdmodfacs> Valeur propre du vecteur en lecture:   59.27    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    71
 Rdmodfacs> Valeur propre du vecteur en lecture:   61.70    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    72
 Rdmodfacs> Valeur propre du vecteur en lecture:   62.23    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    73
 Rdmodfacs> Valeur propre du vecteur en lecture:   64.77    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    74
 Rdmodfacs> Valeur propre du vecteur en lecture:   64.93    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    75
 Rdmodfacs> Valeur propre du vecteur en lecture:   66.70    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    76
 Rdmodfacs> Valeur propre du vecteur en lecture:   67.81    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    77
 Rdmodfacs> Valeur propre du vecteur en lecture:   68.36    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    78
 Rdmodfacs> Valeur propre du vecteur en lecture:   69.85    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    79
 Rdmodfacs> Valeur propre du vecteur en lecture:   71.41    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    80
 Rdmodfacs> Valeur propre du vecteur en lecture:   72.37    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    81
 Rdmodfacs> Valeur propre du vecteur en lecture:   73.06    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    82
 Rdmodfacs> Valeur propre du vecteur en lecture:   76.49    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    83
 Rdmodfacs> Valeur propre du vecteur en lecture:   76.93    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    84
 Rdmodfacs> Valeur propre du vecteur en lecture:   78.81    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    85
 Rdmodfacs> Valeur propre du vecteur en lecture:   80.03    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    86
 Rdmodfacs> Valeur propre du vecteur en lecture:   81.03    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    87
 Rdmodfacs> Valeur propre du vecteur en lecture:   81.87    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    88
 Rdmodfacs> Valeur propre du vecteur en lecture:   83.66    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    89
 Rdmodfacs> Valeur propre du vecteur en lecture:   84.36    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    90
 Rdmodfacs> Valeur propre du vecteur en lecture:   85.09    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    91
 Rdmodfacs> Valeur propre du vecteur en lecture:   85.65    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    92
 Rdmodfacs> Valeur propre du vecteur en lecture:   86.02    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    93
 Rdmodfacs> Valeur propre du vecteur en lecture:   87.72    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    94
 Rdmodfacs> Valeur propre du vecteur en lecture:   88.45    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    95
 Rdmodfacs> Valeur propre du vecteur en lecture:   91.74    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    96
 Rdmodfacs> Valeur propre du vecteur en lecture:   93.04    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    97
 Rdmodfacs> Valeur propre du vecteur en lecture:   93.19    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    98
 Rdmodfacs> Valeur propre du vecteur en lecture:   93.45    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:    99
 Rdmodfacs> Valeur propre du vecteur en lecture:   95.21    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:   100
 Rdmodfacs> Valeur propre du vecteur en lecture:   96.62    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:   101
 Rdmodfacs> Valeur propre du vecteur en lecture:   96.85    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:   102
 Rdmodfacs> Valeur propre du vecteur en lecture:   98.49    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:   103
 Rdmodfacs> Valeur propre du vecteur en lecture:   99.19    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:   104
 Rdmodfacs> Valeur propre du vecteur en lecture:   100.6    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:   105
 Rdmodfacs> Valeur propre du vecteur en lecture:   102.2    

 Rdmodfacs> Numero du vecteur CERFACS en lecture:   106
 Rdmodfacs> Valeur propre du vecteur en lecture:   102.4    

 Bfactors>  106 vectors,   8160 coordinates in file.

 Openam> file on opening on unit     12:
 bfactors.pred                                                   

 Bfactors> Best zero-eigenvalue found  :     0.000000
 Bfactors>     6 eigenvalues less than :     0.000000
 Bfactors> Lowest non-zero eigenvalue  :     0.017654
 Bfactors>   100 eigenvectors will be considered.
 Bfactors> Rotation-Tranlation modes are skipped.

 Bfactors> Mass-weighted B-factors are computed.
          (CHARMM units assumed for eigenvalues)

%Bfactors-Wn>     0 negative values found in the B-factors column of pdb file.
%Bfactors-Wn> So, only mass-weighted predicted B-factors will be saved.
          (CHARMM units assumed for eigenvalues)

 Bfactors> Normal end.
check_modes
getting mode 7
running: ../../bin/get_modes.sh 240125110541334525 7 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 7
calculating perturbed structure for DQ=-100
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=0
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=100
240125110541334525.eigenfacs
240125110541334525.atom
making animated gifs
11 models are in 240125110541334525.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.7.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 8
running: ../../bin/get_modes.sh 240125110541334525 8 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 8
calculating perturbed structure for DQ=-100
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=0
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=100
240125110541334525.eigenfacs
240125110541334525.atom
making animated gifs
11 models are in 240125110541334525.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.8.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 9
running: ../../bin/get_modes.sh 240125110541334525 9 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 9
calculating perturbed structure for DQ=-100
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=0
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=100
240125110541334525.eigenfacs
240125110541334525.atom
making animated gifs
11 models are in 240125110541334525.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.9.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 10
running: ../../bin/get_modes.sh 240125110541334525 10 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 10
calculating perturbed structure for DQ=-100
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=0
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=100
240125110541334525.eigenfacs
240125110541334525.atom
making animated gifs
11 models are in 240125110541334525.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.10.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
getting mode 11
running: ../../bin/get_modes.sh 240125110541334525 11 -100 100 20 on 0
normal mode computation
generate a series of perturbations for mode 11
calculating perturbed structure for DQ=-100
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=-20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=0
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=20
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=40
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=60
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=80
240125110541334525.eigenfacs
240125110541334525.atom
calculating perturbed structure for DQ=100
240125110541334525.eigenfacs
240125110541334525.atom
making animated gifs
11 models are in 240125110541334525.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
11 models are in 240125110541334525.11.pdb, 1 models will be skipped
MODEL 1 will be plotted
MODEL 3 will be plotted
MODEL 5 will be plotted
MODEL 7 will be plotted
MODEL 9 will be plotted
MODEL 11 will be plotted
making thumbnail 100x100
making small animated gif 100x100
making animated gif 300x300
240125110541334525.10.pdb
240125110541334525.11.pdb
240125110541334525.7.pdb
240125110541334525.8.pdb
240125110541334525.9.pdb



STDERR:
Note: The following floating-point exceptions are signalling: IEEE_DENORMAL

real	0m5.279s
user	0m5.231s
sys	0m0.048s
../../bin/check_modes: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
mv: cannot stat 'Chkmod.res': No such file or directory
cat: 240125110541334525.Chkmod.res: No such file or directory
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
pstopnm: Writing ppmraw format
If you find results from this site helpful for your research, please cite one of our papers:
K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.
elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.
Should you encounter any unexpected behaviour, please let us know.

*** v7t1-del5-1 ***

LOGs for ID: 240125110541334525

output from eigenvector calculation:

Should you encounter any unexpected behaviour,
please let us know.

* v7t1-del5-1 *
