Should you encounter any unexpected behaviour,
please let us know.

STDOUT:

CUTOFF set to default value (CUTOFF=8)
Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 2402081521351941306.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 2402081521351941306.atom to be opened.

 Openam> File opened: 2402081521351941306.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =   4096
            First residue number     =      1
            Last  residue number     =   1024
            Number of atoms found    =  32888
            Mean number per residue  =      8.0

 Pdbmat> Coordinate statistics: 
 =   122.264218 +/-    38.770090 From:    32.164000 To:   212.341000
 =   122.359814 +/-    29.551809 From:    52.547000 To:   192.193000
 =   122.294636 +/-    17.886756 From:    78.518000 To:   166.032000
 Pdbmat> Masses are all set to one.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijb

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is   2.3812 % Filled.
 Pdbmat>     13629544  non-zero elements.
 Pdbmat>      1492694 atom-atom interactions.

 Pdbmat> Number per atom=     90.77 +/-     21.29
         Maximum number =    137
         Minimum number =     21

 Pdbmat> Matrix trace   = 2.985388E+07
 Pdbmat> Larger element =  513.638    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
automatic determination of NRBL (NRBL = nresidues/200 + 1)
4096 non-zero elements, NRBL set to 21
Diagonalize Tirion matrix using diagrtb
 Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
 Diagrtb> Version 2.52, November 2004. 
 Diagrtb> Options to be read in diagrtb.dat file.

 Diagrtb> Options taken into account:

 MATRix filename          = pdbmat.sdijb
 COORdinates filename     = 2402081521351941306.atom
 Eigenvector OUTPut file  = matrix.eigenrtb
 Nb of VECTors required   =        106
 EigeNVALues chosen       =       LOWE
 Type of SUBStructuring   =       NONE
 Nb of residues per BLOck =         21
 Origin of MASS values    =       CONS
 MATRix FORMat            =       BINA
 Temporary files cleaning =       ALL 
 Output PRINting level    =          2

 Diagrtb> Memory allocation for Blocpdb.

 Blocpdb> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.xyzm   

 Blocpdb> Coordinate file 2402081521351941306.atom to be opened.

 Openam> file on opening on unit     11:
 2402081521351941306.atom                                                                                                        

 Blocpdb> Coordinate file in PDB format.

 Blocpdb> 32888 atoms picked in pdb file.
 Blocpdb>   All masses set to unity.
 Blocpdb> Coordinate file is rewritten.

 Blocpdb> Substructuring:
 Blocpdb>    21 residue(s) per block.
 Blocpdb>  4096 residues.
 Blocpdb>   168 atoms in block      1
 Block first atom:      1
 Blocpdb>   171 atoms in block      2
 Block first atom:    169
 Blocpdb>   182 atoms in block      3
 Block first atom:    340
 Blocpdb>   162 atoms in block      4
 Block first atom:    522
 Blocpdb>   168 atoms in block      5
 Block first atom:    684
 Blocpdb>   162 atoms in block      6
 Block first atom:    852
 Blocpdb>   173 atoms in block      7
 Block first atom:   1014
 Blocpdb>   174 atoms in block      8
 Block first atom:   1187
 Blocpdb>   162 atoms in block      9
 Block first atom:   1361
 Blocpdb>   181 atoms in block     10
 Block first atom:   1523
 Blocpdb>   170 atoms in block     11
 Block first atom:   1704
 Blocpdb>   168 atoms in block     12
 Block first atom:   1874
 Blocpdb>   160 atoms in block     13
 Block first atom:   2042
 Blocpdb>   164 atoms in block     14
 Block first atom:   2202
 Blocpdb>   172 atoms in block     15
 Block first atom:   2366
 Blocpdb>   156 atoms in block     16
 Block first atom:   2538
 Blocpdb>   165 atoms in block     17
 Block first atom:   2694
 Blocpdb>   173 atoms in block     18
 Block first atom:   2859
 Blocpdb>   180 atoms in block     19
 Block first atom:   3032
 Blocpdb>   170 atoms in block     20
 Block first atom:   3212
 Blocpdb>   173 atoms in block     21
 Block first atom:   3382
 Blocpdb>   175 atoms in block     22
 Block first atom:   3555
 Blocpdb>   167 atoms in block     23
 Block first atom:   3730
 Blocpdb>   152 atoms in block     24
 Block first atom:   3897
 Blocpdb>   178 atoms in block     25
 Block first atom:   4049
 Blocpdb>   156 atoms in block     26
 Block first atom:   4227
 Blocpdb>   178 atoms in block     27
 Block first atom:   4383
 Blocpdb>   179 atoms in block     28
 Block first atom:   4561
 Blocpdb>   164 atoms in block     29
 Block first atom:   4740
 Blocpdb>   177 atoms in block     30
 Block first atom:   4904
 Blocpdb>   174 atoms in block     31
 Block first atom:   5081
 Blocpdb>   158 atoms in block     32
 Block first atom:   5255
 Blocpdb>   154 atoms in block     33
 Block first atom:   5413
 Blocpdb>   167 atoms in block     34
 Block first atom:   5567
 Blocpdb>   165 atoms in block     35
 Block first atom:   5734
 Blocpdb>   167 atoms in block     36
 Block first atom:   5899
 Blocpdb>   183 atoms in block     37
 Block first atom:   6066
 Blocpdb>   165 atoms in block     38
 Block first atom:   6249
 Blocpdb>   173 atoms in block     39
 Block first atom:   6414
 Blocpdb>   145 atoms in block     40
 Block first atom:   6587
 Blocpdb>   180 atoms in block     41
 Block first atom:   6732
 Blocpdb>   151 atoms in block     42
 Block first atom:   6912
 Blocpdb>   157 atoms in block     43
 Block first atom:   7063
 Blocpdb>   176 atoms in block     44
 Block first atom:   7220
 Blocpdb>   170 atoms in block     45
 Block first atom:   7396
 Blocpdb>   187 atoms in block     46
 Block first atom:   7566
 Blocpdb>   176 atoms in block     47
 Block first atom:   7753
 Blocpdb>   154 atoms in block     48
 Block first atom:   7929
 Blocpdb>   140 atoms in block     49
 Block first atom:   8083
 Blocpdb>   168 atoms in block     50
 Block first atom:   8223
 Blocpdb>   171 atoms in block     51
 Block first atom:   8391
 Blocpdb>   182 atoms in block     52
 Block first atom:   8562
 Blocpdb>   162 atoms in block     53
 Block first atom:   8744
 Blocpdb>   168 atoms in block     54
 Block first atom:   8906
 Blocpdb>   162 atoms in block     55
 Block first atom:   9074
 Blocpdb>   173 atoms in block     56
 Block first atom:   9236
 Blocpdb>   174 atoms in block     57
 Block first atom:   9409
 Blocpdb>   162 atoms in block     58
 Block first atom:   9583
 Blocpdb>   181 atoms in block     59
 Block first atom:   9745
 Blocpdb>   170 atoms in block     60
 Block first atom:   9926
 Blocpdb>   168 atoms in block     61
 Block first atom:  10096
 Blocpdb>   160 atoms in block     62
 Block first atom:  10264
 Blocpdb>   164 atoms in block     63
 Block first atom:  10424
 Blocpdb>   172 atoms in block     64
 Block first atom:  10588
 Blocpdb>   156 atoms in block     65
 Block first atom:  10760
 Blocpdb>   165 atoms in block     66
 Block first atom:  10916
 Blocpdb>   173 atoms in block     67
 Block first atom:  11081
 Blocpdb>   180 atoms in block     68
 Block first atom:  11254
 Blocpdb>   170 atoms in block     69
 Block first atom:  11434
 Blocpdb>   173 atoms in block     70
 Block first atom:  11604
 Blocpdb>   175 atoms in block     71
 Block first atom:  11777
 Blocpdb>   167 atoms in block     72
 Block first atom:  11952
 Blocpdb>   152 atoms in block     73
 Block first atom:  12119
 Blocpdb>   178 atoms in block     74
 Block first atom:  12271
 Blocpdb>   156 atoms in block     75
 Block first atom:  12449
 Blocpdb>   178 atoms in block     76
 Block first atom:  12605
 Blocpdb>   179 atoms in block     77
 Block first atom:  12783
 Blocpdb>   164 atoms in block     78
 Block first atom:  12962
 Blocpdb>   177 atoms in block     79
 Block first atom:  13126
 Blocpdb>   174 atoms in block     80
 Block first atom:  13303
 Blocpdb>   158 atoms in block     81
 Block first atom:  13477
 Blocpdb>   154 atoms in block     82
 Block first atom:  13635
 Blocpdb>   167 atoms in block     83
 Block first atom:  13789
 Blocpdb>   165 atoms in block     84
 Block first atom:  13956
 Blocpdb>   167 atoms in block     85
 Block first atom:  14121
 Blocpdb>   183 atoms in block     86
 Block first atom:  14288
 Blocpdb>   165 atoms in block     87
 Block first atom:  14471
 Blocpdb>   173 atoms in block     88
 Block first atom:  14636
 Blocpdb>   145 atoms in block     89
 Block first atom:  14809
 Blocpdb>   180 atoms in block     90
 Block first atom:  14954
 Blocpdb>   151 atoms in block     91
 Block first atom:  15134
 Blocpdb>   157 atoms in block     92
 Block first atom:  15285
 Blocpdb>   176 atoms in block     93
 Block first atom:  15442
 Blocpdb>   170 atoms in block     94
 Block first atom:  15618
 Blocpdb>   187 atoms in block     95
 Block first atom:  15788
 Blocpdb>   176 atoms in block     96
 Block first atom:  15975
 Blocpdb>   154 atoms in block     97
 Block first atom:  16151
 Blocpdb>   140 atoms in block     98
 Block first atom:  16305
 Blocpdb>   168 atoms in block     99
 Block first atom:  16445
 Blocpdb>   171 atoms in block    100
 Block first atom:  16613
 Blocpdb>   182 atoms in block    101
 Block first atom:  16784
 Blocpdb>   162 atoms in block    102
 Block first atom:  16966
 Blocpdb>   168 atoms in block    103
 Block first atom:  17128
 Blocpdb>   162 atoms in block    104
 Block first atom:  17296
 Blocpdb>   173 atoms in block    105
 Block first atom:  17458
 Blocpdb>   174 atoms in block    106
 Block first atom:  17631
 Blocpdb>   162 atoms in block    107
 Block first atom:  17805
 Blocpdb>   181 atoms in block    108
 Block first atom:  17967
 Blocpdb>   170 atoms in block    109
 Block first atom:  18148
 Blocpdb>   168 atoms in block    110
 Block first atom:  18318
 Blocpdb>   160 atoms in block    111
 Block first atom:  18486
 Blocpdb>   164 atoms in block    112
 Block first atom:  18646
 Blocpdb>   172 atoms in block    113
 Block first atom:  18810
 Blocpdb>   156 atoms in block    114
 Block first atom:  18982
 Blocpdb>   165 atoms in block    115
 Block first atom:  19138
 Blocpdb>   173 atoms in block    116
 Block first atom:  19303
 Blocpdb>   180 atoms in block    117
 Block first atom:  19476
 Blocpdb>   170 atoms in block    118
 Block first atom:  19656
 Blocpdb>   173 atoms in block    119
 Block first atom:  19826
 Blocpdb>   175 atoms in block    120
 Block first atom:  19999
 Blocpdb>   167 atoms in block    121
 Block first atom:  20174
 Blocpdb>   152 atoms in block    122
 Block first atom:  20341
 Blocpdb>   178 atoms in block    123
 Block first atom:  20493
 Blocpdb>   156 atoms in block    124
 Block first atom:  20671
 Blocpdb>   178 atoms in block    125
 Block first atom:  20827
 Blocpdb>   179 atoms in block    126
 Block first atom:  21005
 Blocpdb>   164 atoms in block    127
 Block first atom:  21184
 Blocpdb>   177 atoms in block    128
 Block first atom:  21348
 Blocpdb>   174 atoms in block    129
 Block first atom:  21525
 Blocpdb>   158 atoms in block    130
 Block first atom:  21699
 Blocpdb>   154 atoms in block    131
 Block first atom:  21857
 Blocpdb>   167 atoms in block    132
 Block first atom:  22011
 Blocpdb>   165 atoms in block    133
 Block first atom:  22178
 Blocpdb>   167 atoms in block    134
 Block first atom:  22343
 Blocpdb>   183 atoms in block    135
 Block first atom:  22510
 Blocpdb>   165 atoms in block    136
 Block first atom:  22693
 Blocpdb>   173 atoms in block    137
 Block first atom:  22858
 Blocpdb>   145 atoms in block    138
 Block first atom:  23031
 Blocpdb>   180 atoms in block    139
 Block first atom:  23176
 Blocpdb>   151 atoms in block    140
 Block first atom:  23356
 Blocpdb>   157 atoms in block    141
 Block first atom:  23507
 Blocpdb>   176 atoms in block    142
 Block first atom:  23664
 Blocpdb>   170 atoms in block    143
 Block first atom:  23840
 Blocpdb>   187 atoms in block    144
 Block first atom:  24010
 Blocpdb>   176 atoms in block    145
 Block first atom:  24197
 Blocpdb>   154 atoms in block    146
 Block first atom:  24373
 Blocpdb>   140 atoms in block    147
 Block first atom:  24527
 Blocpdb>   168 atoms in block    148
 Block first atom:  24667
 Blocpdb>   171 atoms in block    149
 Block first atom:  24835
 Blocpdb>   182 atoms in block    150
 Block first atom:  25006
 Blocpdb>   162 atoms in block    151
 Block first atom:  25188
 Blocpdb>   168 atoms in block    152
 Block first atom:  25350
 Blocpdb>   162 atoms in block    153
 Block first atom:  25518
 Blocpdb>   173 atoms in block    154
 Block first atom:  25680
 Blocpdb>   174 atoms in block    155
 Block first atom:  25853
 Blocpdb>   162 atoms in block    156
 Block first atom:  26027
 Blocpdb>   181 atoms in block    157
 Block first atom:  26189
 Blocpdb>   170 atoms in block    158
 Block first atom:  26370
 Blocpdb>   168 atoms in block    159
 Block first atom:  26540
 Blocpdb>   160 atoms in block    160
 Block first atom:  26708
 Blocpdb>   164 atoms in block    161
 Block first atom:  26868
 Blocpdb>   172 atoms in block    162
 Block first atom:  27032
 Blocpdb>   156 atoms in block    163
 Block first atom:  27204
 Blocpdb>   165 atoms in block    164
 Block first atom:  27360
 Blocpdb>   173 atoms in block    165
 Block first atom:  27525
 Blocpdb>   180 atoms in block    166
 Block first atom:  27698
 Blocpdb>   170 atoms in block    167
 Block first atom:  27878
 Blocpdb>   173 atoms in block    168
 Block first atom:  28048
 Blocpdb>   175 atoms in block    169
 Block first atom:  28221
 Blocpdb>   167 atoms in block    170
 Block first atom:  28396
 Blocpdb>   152 atoms in block    171
 Block first atom:  28563
 Blocpdb>   178 atoms in block    172
 Block first atom:  28715
 Blocpdb>   156 atoms in block    173
 Block first atom:  28893
 Blocpdb>   178 atoms in block    174
 Block first atom:  29049
 Blocpdb>   179 atoms in block    175
 Block first atom:  29227
 Blocpdb>   164 atoms in block    176
 Block first atom:  29406
 Blocpdb>   177 atoms in block    177
 Block first atom:  29570
 Blocpdb>   174 atoms in block    178
 Block first atom:  29747
 Blocpdb>   158 atoms in block    179
 Block first atom:  29921
 Blocpdb>   154 atoms in block    180
 Block first atom:  30079
 Blocpdb>   167 atoms in block    181
 Block first atom:  30233
 Blocpdb>   165 atoms in block    182
 Block first atom:  30400
 Blocpdb>   167 atoms in block    183
 Block first atom:  30565
 Blocpdb>   183 atoms in block    184
 Block first atom:  30732
 Blocpdb>   165 atoms in block    185
 Block first atom:  30915
 Blocpdb>   173 atoms in block    186
 Block first atom:  31080
 Blocpdb>   145 atoms in block    187
 Block first atom:  31253
 Blocpdb>   180 atoms in block    188
 Block first atom:  31398
 Blocpdb>   151 atoms in block    189
 Block first atom:  31578
 Blocpdb>   157 atoms in block    190
 Block first atom:  31729
 Blocpdb>   176 atoms in block    191
 Block first atom:  31886
 Blocpdb>   170 atoms in block    192
 Block first atom:  32062
 Blocpdb>   187 atoms in block    193
 Block first atom:  32232
 Blocpdb>   176 atoms in block    194
 Block first atom:  32419
 Blocpdb>   154 atoms in block    195
 Block first atom:  32595
 Blocpdb>   140 atoms in block    196
 Block first atom:  32748

 Blocpdb>   196 blocks.

 Blocpdb> At most,    187 atoms in each of them.
 Blocpdb> At least,   140 atoms in each of them.

 Blocpdb> Normal end of Blocpdb.

 Diagrtb> Memory allocation for Prepmat.
 Diagrtb> Memory allocation for RTB.
 Diagrtb> Memory allocation for Diagstd.
 Diagrtb> Memory allocation for RTB_to_modes.

%Diagrtb-Er> IRWKMX up to:     55665226 Maximum allowed is LRWORK=     32000000

%Diagrtb-Er> Not enough memory allowed for working arrays. Sorry.
 Lower the number of blocks, the sizes of the largest ones...
 Or recompile DIAGRTB with larger WORKing arrays.



STDERR:
STOP *Working arrays allocation error*

real	0m0.150s
user	0m0.150s
sys	0m0.000s

• K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
• K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.