Should you encounter any unexpected behaviour,
please let us know.

STDOUT:

CUTOFF set to default value (CUTOFF=8)
Build Tirion matrix:
 Pdbmat> Computes the Hessian matrix, using an Elastic Network Model.
 Pdbmat> Version 3.50, Fevrier 2004.    

 Pdbmat> Options to be read in pdbmat.dat file.

 Pdbmat> Coordinate filename     = 2402081540291944839.atom

 Pdbmat> Distance cutoff         =       8.00
         Force constant          =      10.00
         Origin of mass values   =       CONS
 Pdbmat> Levelshift              =    1.0E-09
         PRINTing level          =          2

 Pdbmat> Coordinate file 2402081540291944839.atom to be opened.

 Openam> File opened: 2402081540291944839.atom

 Pdbmat> Coordinate file in PDB format.

 Rdatompdb> Reading pdb file.
 Rdatompdb> End of file reached.
 Rdatompdb> Number of I/O errors:      0

 Rdatompdb> Number of residues found =   4044
            First residue number     =     13
            Last  residue number     =   1023
            Number of atoms found    =  32500
            Mean number per residue  =      8.0

 Pdbmat> Coordinate statistics: 
 =    -0.100605 +/-    23.060917 From:   -55.029000 To:    56.155000
 =    -3.359823 +/-    28.836709 From:   -71.722000 To:    65.071000
 =    -3.090455 +/-    36.286092 From:   -89.515000 To:    83.299000
 Pdbmat> Masses are all set to one.

 Openam> File opened: pdbmat.xyzm
 Pdbmat> Coordinates and masses considered are saved.

 Openam> File opened: pdbmat.sdijb

 Pdbmat> Matrix statistics:

 Pdbmat> The matrix is   2.9256 % Filled.
 Pdbmat>     13405410  non-zero elements.
 Pdbmat>      1468070 atom-atom interactions.

 Pdbmat> Number per atom=     90.34 +/-     21.84
         Maximum number =    137
         Minimum number =     11

 Pdbmat> Matrix trace   = 2.936140E+07
 Pdbmat> Larger element =  503.119    
 Pdbmat>      0 elements larger than +/-  1.0E+10

 Pdbmat> Normal end.
automatic determination of NRBL (NRBL = nresidues/200 + 1)
4044 non-zero elements, NRBL set to 21
Diagonalize Tirion matrix using diagrtb
 Diagrtb> Diagonalizes a matrix, using the RTB/BNM approximation.
 Diagrtb> Version 2.52, November 2004. 
 Diagrtb> Options to be read in diagrtb.dat file.

 Diagrtb> Options taken into account:

 MATRix filename          = pdbmat.sdijb
 COORdinates filename     = 2402081540291944839.atom
 Eigenvector OUTPut file  = matrix.eigenrtb
 Nb of VECTors required   =        106
 EigeNVALues chosen       =       LOWE
 Type of SUBStructuring   =       NONE
 Nb of residues per BLOck =         21
 Origin of MASS values    =       CONS
 MATRix FORMat            =       BINA
 Temporary files cleaning =       ALL 
 Output PRINting level    =          2

 Diagrtb> Memory allocation for Blocpdb.

 Blocpdb> Entering in.

 Openam> file on opening on unit     10:
 diagrtb_work.xyzm   

 Blocpdb> Coordinate file 2402081540291944839.atom to be opened.

 Openam> file on opening on unit     11:
 2402081540291944839.atom                                                                                                        

 Blocpdb> Coordinate file in PDB format.

 Blocpdb> 32500 atoms picked in pdb file.
 Blocpdb>   All masses set to unity.
 Blocpdb> Coordinate file is rewritten.

 Blocpdb> Substructuring:
 Blocpdb>    21 residue(s) per block.
 Blocpdb>  4044 residues.
 Blocpdb>   175 atoms in block      1
 Block first atom:      1
 Blocpdb>   174 atoms in block      2
 Block first atom:    176
 Blocpdb>   180 atoms in block      3
 Block first atom:    350
 Blocpdb>   165 atoms in block      4
 Block first atom:    530
 Blocpdb>   165 atoms in block      5
 Block first atom:    695
 Blocpdb>   167 atoms in block      6
 Block first atom:    860
 Blocpdb>   176 atoms in block      7
 Block first atom:   1027
 Blocpdb>   161 atoms in block      8
 Block first atom:   1203
 Blocpdb>   174 atoms in block      9
 Block first atom:   1364
 Blocpdb>   175 atoms in block     10
 Block first atom:   1538
 Blocpdb>   171 atoms in block     11
 Block first atom:   1713
 Blocpdb>   172 atoms in block     12
 Block first atom:   1884
 Blocpdb>   149 atoms in block     13
 Block first atom:   2056
 Blocpdb>   170 atoms in block     14
 Block first atom:   2205
 Blocpdb>   160 atoms in block     15
 Block first atom:   2375
 Blocpdb>   163 atoms in block     16
 Block first atom:   2535
 Blocpdb>   174 atoms in block     17
 Block first atom:   2698
 Blocpdb>   168 atoms in block     18
 Block first atom:   2872
 Blocpdb>   186 atoms in block     19
 Block first atom:   3040
 Blocpdb>   172 atoms in block     20
 Block first atom:   3226
 Blocpdb>   171 atoms in block     21
 Block first atom:   3398
 Blocpdb>   170 atoms in block     22
 Block first atom:   3569
 Blocpdb>   150 atoms in block     23
 Block first atom:   3739
 Blocpdb>   165 atoms in block     24
 Block first atom:   3889
 Blocpdb>   175 atoms in block     25
 Block first atom:   4054
 Blocpdb>   170 atoms in block     26
 Block first atom:   4229
 Blocpdb>   184 atoms in block     27
 Block first atom:   4399
 Blocpdb>   162 atoms in block     28
 Block first atom:   4583
 Blocpdb>   161 atoms in block     29
 Block first atom:   4745
 Blocpdb>   182 atoms in block     30
 Block first atom:   4906
 Blocpdb>   175 atoms in block     31
 Block first atom:   5088
 Blocpdb>   153 atoms in block     32
 Block first atom:   5263
 Blocpdb>   162 atoms in block     33
 Block first atom:   5416
 Blocpdb>   174 atoms in block     34
 Block first atom:   5578
 Blocpdb>   155 atoms in block     35
 Block first atom:   5752
 Blocpdb>   177 atoms in block     36
 Block first atom:   5907
 Blocpdb>   176 atoms in block     37
 Block first atom:   6084
 Blocpdb>   172 atoms in block     38
 Block first atom:   6260
 Blocpdb>   149 atoms in block     39
 Block first atom:   6432
 Blocpdb>   165 atoms in block     40
 Block first atom:   6581
 Blocpdb>   160 atoms in block     41
 Block first atom:   6746
 Blocpdb>   158 atoms in block     42
 Block first atom:   6906
 Blocpdb>   166 atoms in block     43
 Block first atom:   7064
 Blocpdb>   176 atoms in block     44
 Block first atom:   7230
 Blocpdb>   182 atoms in block     45
 Block first atom:   7406
 Blocpdb>   178 atoms in block     46
 Block first atom:   7588
 Blocpdb>   164 atoms in block     47
 Block first atom:   7766
 Blocpdb>   172 atoms in block     48
 Block first atom:   7930
 Blocpdb>    24 atoms in block     49
 Block first atom:   8102
 Blocpdb>   175 atoms in block     50
 Block first atom:   8126
 Blocpdb>   174 atoms in block     51
 Block first atom:   8301
 Blocpdb>   180 atoms in block     52
 Block first atom:   8475
 Blocpdb>   165 atoms in block     53
 Block first atom:   8655
 Blocpdb>   165 atoms in block     54
 Block first atom:   8820
 Blocpdb>   167 atoms in block     55
 Block first atom:   8985
 Blocpdb>   176 atoms in block     56
 Block first atom:   9152
 Blocpdb>   161 atoms in block     57
 Block first atom:   9328
 Blocpdb>   174 atoms in block     58
 Block first atom:   9489
 Blocpdb>   175 atoms in block     59
 Block first atom:   9663
 Blocpdb>   171 atoms in block     60
 Block first atom:   9838
 Blocpdb>   172 atoms in block     61
 Block first atom:  10009
 Blocpdb>   149 atoms in block     62
 Block first atom:  10181
 Blocpdb>   170 atoms in block     63
 Block first atom:  10330
 Blocpdb>   160 atoms in block     64
 Block first atom:  10500
 Blocpdb>   163 atoms in block     65
 Block first atom:  10660
 Blocpdb>   174 atoms in block     66
 Block first atom:  10823
 Blocpdb>   168 atoms in block     67
 Block first atom:  10997
 Blocpdb>   186 atoms in block     68
 Block first atom:  11165
 Blocpdb>   172 atoms in block     69
 Block first atom:  11351
 Blocpdb>   171 atoms in block     70
 Block first atom:  11523
 Blocpdb>   170 atoms in block     71
 Block first atom:  11694
 Blocpdb>   150 atoms in block     72
 Block first atom:  11864
 Blocpdb>   165 atoms in block     73
 Block first atom:  12014
 Blocpdb>   175 atoms in block     74
 Block first atom:  12179
 Blocpdb>   170 atoms in block     75
 Block first atom:  12354
 Blocpdb>   184 atoms in block     76
 Block first atom:  12524
 Blocpdb>   162 atoms in block     77
 Block first atom:  12708
 Blocpdb>   161 atoms in block     78
 Block first atom:  12870
 Blocpdb>   182 atoms in block     79
 Block first atom:  13031
 Blocpdb>   175 atoms in block     80
 Block first atom:  13213
 Blocpdb>   153 atoms in block     81
 Block first atom:  13388
 Blocpdb>   162 atoms in block     82
 Block first atom:  13541
 Blocpdb>   174 atoms in block     83
 Block first atom:  13703
 Blocpdb>   155 atoms in block     84
 Block first atom:  13877
 Blocpdb>   177 atoms in block     85
 Block first atom:  14032
 Blocpdb>   176 atoms in block     86
 Block first atom:  14209
 Blocpdb>   172 atoms in block     87
 Block first atom:  14385
 Blocpdb>   149 atoms in block     88
 Block first atom:  14557
 Blocpdb>   165 atoms in block     89
 Block first atom:  14706
 Blocpdb>   160 atoms in block     90
 Block first atom:  14871
 Blocpdb>   158 atoms in block     91
 Block first atom:  15031
 Blocpdb>   166 atoms in block     92
 Block first atom:  15189
 Blocpdb>   176 atoms in block     93
 Block first atom:  15355
 Blocpdb>   182 atoms in block     94
 Block first atom:  15531
 Blocpdb>   178 atoms in block     95
 Block first atom:  15713
 Blocpdb>   164 atoms in block     96
 Block first atom:  15891
 Blocpdb>   172 atoms in block     97
 Block first atom:  16055
 Blocpdb>    24 atoms in block     98
 Block first atom:  16227
 Blocpdb>   175 atoms in block     99
 Block first atom:  16251
 Blocpdb>   174 atoms in block    100
 Block first atom:  16426
 Blocpdb>   180 atoms in block    101
 Block first atom:  16600
 Blocpdb>   165 atoms in block    102
 Block first atom:  16780
 Blocpdb>   165 atoms in block    103
 Block first atom:  16945
 Blocpdb>   167 atoms in block    104
 Block first atom:  17110
 Blocpdb>   176 atoms in block    105
 Block first atom:  17277
 Blocpdb>   161 atoms in block    106
 Block first atom:  17453
 Blocpdb>   174 atoms in block    107
 Block first atom:  17614
 Blocpdb>   175 atoms in block    108
 Block first atom:  17788
 Blocpdb>   171 atoms in block    109
 Block first atom:  17963
 Blocpdb>   172 atoms in block    110
 Block first atom:  18134
 Blocpdb>   149 atoms in block    111
 Block first atom:  18306
 Blocpdb>   170 atoms in block    112
 Block first atom:  18455
 Blocpdb>   160 atoms in block    113
 Block first atom:  18625
 Blocpdb>   163 atoms in block    114
 Block first atom:  18785
 Blocpdb>   174 atoms in block    115
 Block first atom:  18948
 Blocpdb>   168 atoms in block    116
 Block first atom:  19122
 Blocpdb>   186 atoms in block    117
 Block first atom:  19290
 Blocpdb>   172 atoms in block    118
 Block first atom:  19476
 Blocpdb>   171 atoms in block    119
 Block first atom:  19648
 Blocpdb>   170 atoms in block    120
 Block first atom:  19819
 Blocpdb>   150 atoms in block    121
 Block first atom:  19989
 Blocpdb>   165 atoms in block    122
 Block first atom:  20139
 Blocpdb>   175 atoms in block    123
 Block first atom:  20304
 Blocpdb>   170 atoms in block    124
 Block first atom:  20479
 Blocpdb>   184 atoms in block    125
 Block first atom:  20649
 Blocpdb>   162 atoms in block    126
 Block first atom:  20833
 Blocpdb>   161 atoms in block    127
 Block first atom:  20995
 Blocpdb>   182 atoms in block    128
 Block first atom:  21156
 Blocpdb>   175 atoms in block    129
 Block first atom:  21338
 Blocpdb>   153 atoms in block    130
 Block first atom:  21513
 Blocpdb>   162 atoms in block    131
 Block first atom:  21666
 Blocpdb>   174 atoms in block    132
 Block first atom:  21828
 Blocpdb>   155 atoms in block    133
 Block first atom:  22002
 Blocpdb>   177 atoms in block    134
 Block first atom:  22157
 Blocpdb>   176 atoms in block    135
 Block first atom:  22334
 Blocpdb>   172 atoms in block    136
 Block first atom:  22510
 Blocpdb>   149 atoms in block    137
 Block first atom:  22682
 Blocpdb>   165 atoms in block    138
 Block first atom:  22831
 Blocpdb>   160 atoms in block    139
 Block first atom:  22996
 Blocpdb>   158 atoms in block    140
 Block first atom:  23156
 Blocpdb>   166 atoms in block    141
 Block first atom:  23314
 Blocpdb>   176 atoms in block    142
 Block first atom:  23480
 Blocpdb>   182 atoms in block    143
 Block first atom:  23656
 Blocpdb>   178 atoms in block    144
 Block first atom:  23838
 Blocpdb>   164 atoms in block    145
 Block first atom:  24016
 Blocpdb>   172 atoms in block    146
 Block first atom:  24180
 Blocpdb>    24 atoms in block    147
 Block first atom:  24352
 Blocpdb>   175 atoms in block    148
 Block first atom:  24376
 Blocpdb>   174 atoms in block    149
 Block first atom:  24551
 Blocpdb>   180 atoms in block    150
 Block first atom:  24725
 Blocpdb>   165 atoms in block    151
 Block first atom:  24905
 Blocpdb>   165 atoms in block    152
 Block first atom:  25070
 Blocpdb>   167 atoms in block    153
 Block first atom:  25235
 Blocpdb>   176 atoms in block    154
 Block first atom:  25402
 Blocpdb>   161 atoms in block    155
 Block first atom:  25578
 Blocpdb>   174 atoms in block    156
 Block first atom:  25739
 Blocpdb>   175 atoms in block    157
 Block first atom:  25913
 Blocpdb>   171 atoms in block    158
 Block first atom:  26088
 Blocpdb>   172 atoms in block    159
 Block first atom:  26259
 Blocpdb>   149 atoms in block    160
 Block first atom:  26431
 Blocpdb>   170 atoms in block    161
 Block first atom:  26580
 Blocpdb>   160 atoms in block    162
 Block first atom:  26750
 Blocpdb>   163 atoms in block    163
 Block first atom:  26910
 Blocpdb>   174 atoms in block    164
 Block first atom:  27073
 Blocpdb>   168 atoms in block    165
 Block first atom:  27247
 Blocpdb>   186 atoms in block    166
 Block first atom:  27415
 Blocpdb>   172 atoms in block    167
 Block first atom:  27601
 Blocpdb>   171 atoms in block    168
 Block first atom:  27773
 Blocpdb>   170 atoms in block    169
 Block first atom:  27944
 Blocpdb>   150 atoms in block    170
 Block first atom:  28114
 Blocpdb>   165 atoms in block    171
 Block first atom:  28264
 Blocpdb>   175 atoms in block    172
 Block first atom:  28429
 Blocpdb>   170 atoms in block    173
 Block first atom:  28604
 Blocpdb>   184 atoms in block    174
 Block first atom:  28774
 Blocpdb>   162 atoms in block    175
 Block first atom:  28958
 Blocpdb>   161 atoms in block    176
 Block first atom:  29120
 Blocpdb>   182 atoms in block    177
 Block first atom:  29281
 Blocpdb>   175 atoms in block    178
 Block first atom:  29463
 Blocpdb>   153 atoms in block    179
 Block first atom:  29638
 Blocpdb>   162 atoms in block    180
 Block first atom:  29791
 Blocpdb>   174 atoms in block    181
 Block first atom:  29953
 Blocpdb>   155 atoms in block    182
 Block first atom:  30127
 Blocpdb>   177 atoms in block    183
 Block first atom:  30282
 Blocpdb>   176 atoms in block    184
 Block first atom:  30459
 Blocpdb>   172 atoms in block    185
 Block first atom:  30635
 Blocpdb>   149 atoms in block    186
 Block first atom:  30807
 Blocpdb>   165 atoms in block    187
 Block first atom:  30956
 Blocpdb>   160 atoms in block    188
 Block first atom:  31121
 Blocpdb>   158 atoms in block    189
 Block first atom:  31281
 Blocpdb>   166 atoms in block    190
 Block first atom:  31439
 Blocpdb>   176 atoms in block    191
 Block first atom:  31605
 Blocpdb>   182 atoms in block    192
 Block first atom:  31781
 Blocpdb>   178 atoms in block    193
 Block first atom:  31963
 Blocpdb>   164 atoms in block    194
 Block first atom:  32141
 Blocpdb>   172 atoms in block    195
 Block first atom:  32305
 Blocpdb>    24 atoms in block    196
 Block first atom:  32476

 Blocpdb>   196 blocks.

 Blocpdb> At most,    186 atoms in each of them.
 Blocpdb> At least,    24 atoms in each of them.

 Blocpdb> Normal end of Blocpdb.

 Diagrtb> Memory allocation for Prepmat.
 Diagrtb> Memory allocation for RTB.
 Diagrtb> Memory allocation for Diagstd.
 Diagrtb> Memory allocation for RTB_to_modes.

%Diagrtb-Er> IRWKMX up to:     54716365 Maximum allowed is LRWORK=     32000000

%Diagrtb-Er> Not enough memory allowed for working arrays. Sorry.
 Lower the number of blocks, the sizes of the largest ones...
 Or recompile DIAGRTB with larger WORKing arrays.



STDERR:
STOP *Working arrays allocation error*

real	0m0.159s
user	0m0.155s
sys	0m0.004s

• K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
• K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.