CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  4CDB_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000  ***

<R2> analysis for 240220090545153969

---  normal mode 13  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0335
MET 10.0301
ALA 20.0182
PRO 30.0244
PRO 40.0239
ALA 50.0215
SER 60.0275
PRO 70.0274
PRO 80.0273
ALA 90.0258
SER 100.0271
PRO 110.0290
LYS 120.0274
THR 130.0304
PRO 140.0330
ILE 150.0304
GLU 160.0260
LYS 170.0278
LYS 180.0296
HIS 190.0248
ALA 200.0225
ASP 210.0259
GLU 220.0259
ILE 230.0217
ASP 240.0214
LYS 250.0246
TYR 260.0236
ILE 270.0203
GLN 280.0210
GLY 290.0237
LEU 300.0226
ASP 310.0226
TYR 320.0214
ASN 330.0207
LYS 340.0162
ASN 350.0178
ASN 360.0184
VAL 370.0147
LEU 380.0140
VAL 390.0160
TYR 400.0133
HIS 410.0141
GLY 420.0147
ASP 430.0130
ALA 440.0121
VAL 450.0078
THR 460.0113
ASN 470.0106
VAL 480.0098
PRO 490.0116
PRO 500.0150
ARG 510.0148
LYS 520.0161
GLY 530.0165
TYR 540.0164
LYS 550.0181
ASP 560.0162
GLY 570.0181
ASN 580.0190
GLU 590.0175
TYR 600.0183
ILE 610.0133
VAL 620.0140
VAL 630.0123
GLU 640.0087
LYS 650.0086
LYS 660.0097
LYS 670.0066
LYS 680.0067
SER 690.0092
ILE 700.0108
ASN 710.0120
GLN 720.0132
ASN 730.0137
ASN 740.0130
ALA 750.0124
ASP 760.0116
ILE 770.0117
GLN 780.0119
VAL 790.0113
VAL 800.0128
ASN 810.0130
ALA 820.0131
ILE 830.0114
SER 840.0097
SER 850.0074
LEU 860.0079
THR 870.0079
TYR 880.0047
PRO 890.0048
GLY 900.0061
ALA 910.0060
LEU 920.0085
VAL 930.0102
LYS 940.0122
ALA 950.0136
ASN 960.0155
SER 970.0159
GLU 980.0139
LEU 990.0127
VAL 1000.0140
GLU 1010.0141
ASN 1020.0130
GLN 1030.0127
PRO 1040.0109
ASP 1050.0108
VAL 1060.0087
LEU 1070.0095
PRO 1080.0076
VAL 1090.0097
LYS 1100.0101
ARG 1110.0093
ASP 1120.0112
SER 1130.0101
LEU 1140.0079
THR 1150.0064
LEU 1160.0038
SER 1170.0027
ILE 1180.0027
ASP 1190.0034
LEU 1200.0034
PRO 1210.0036
GLY 1220.0032
MET 1230.0017
THR 1240.0020
ASN 1250.0038
GLN 1260.0038
ASP 1270.0030
ASN 1280.0013
LYS 1290.0034
ILE 1300.0049
VAL 1310.0072
VAL 1320.0068
LYS 1330.0101
ASN 1340.0086
ALA 1350.0060
THR 1360.0041
LYS 1370.0016
SER 1380.0024
ASN 1390.0039
VAL 1400.0021
ASN 1410.0018
ASN 1420.0031
ALA 1430.0027
VAL 1440.0009
ASN 1450.0023
THR 1460.0028
LEU 1470.0016
VAL 1480.0021
GLU 1490.0033
ARG 1500.0033
TRP 1510.0031
ASN 1520.0049
GLU 1530.0058
LYS 1540.0058
TYR 1550.0054
ALA 1560.0065
GLN 1570.0086
ALA 1580.0079
TYR 1590.0076
PRO 1600.0093
ASN 1610.0096
VAL 1620.0077
SER 1630.0084
ALA 1640.0091
LYS 1650.0097
ILE 1660.0112
ASP 1670.0114
TYR 1680.0117
ASP 1690.0118
ASP 1700.0111
GLU 1710.0104
MET 1720.0080
ALA 1730.0083
TYR 1740.0071
SER 1750.0099
GLU 1760.0115
SER 1770.0119
GLN 1780.0109
LEU 1790.0115
ILE 1800.0128
ALA 1810.0126
LYS 1820.0123
PHE 1830.0127
GLY 1840.0135
THR 1850.0141
ALA 1860.0138
PHE 1870.0134
LYS 1880.0143
ALA 1890.0147
VAL 1900.0139
ASN 1910.0134
ASN 1920.0143
SER 1930.0140
LEU 1940.0129
ASN 1950.0125
VAL 1960.0107
ASN 1970.0085
PHE 1980.0081
GLY 1990.0049
ALA 2000.0022
ILE 2010.0031
SER 2020.0050
GLU 2030.0042
GLY 2040.0040
LYS 2050.0025
MET 2060.0022
GLN 2070.0042
GLU 2080.0078
GLU 2090.0092
VAL 2100.0110
ILE 2110.0119
SER 2120.0120
PHE 2130.0118
LYS 2140.0112
GLN 2150.0105
ILE 2160.0095
TYR 2170.0075
TYR 2180.0063
ASN 2190.0063
VAL 2200.0040
ASN 2210.0051
VAL 2220.0059
ASN 2230.0070
GLU 2240.0090
PRO 2250.0105
THR 2260.0145
ARG 2270.0163
PRO 2280.0153
SER 2290.0168
ARG 2300.0140
PHE 2310.0110
PHE 2320.0129
GLY 2330.0140
LYS 2340.0187
ALA 2350.0183
VAL 2360.0171
THR 2370.0206
LYS 2380.0219
GLU 2390.0223
GLN 2400.0183
LEU 2410.0176
GLN 2420.0207
ALA 2430.0191
LEU 2440.0159
GLY 2450.0182
VAL 2460.0178
ASN 2470.0202
ALA 2480.0215
GLU 2490.0214
ASN 2500.0173
PRO 2510.0163
PRO 2520.0137
ALA 2530.0115
TYR 2540.0090
ILE 2550.0075
SER 2560.0077
SER 2570.0070
VAL 2580.0069
ALA 2590.0081
TYR 2600.0078
GLY 2610.0089
ARG 2620.0113
GLN 2630.0118
VAL 2640.0122
TYR 2650.0124
LEU 2660.0117
LYS 2670.0111
LEU 2680.0097
SER 2690.0077
THR 2700.0058
ASN 2710.0042
SER 2720.0039
HIS 2730.0038
SER 2740.0016
THR 2750.0025
LYS 2760.0046
VAL 2770.0059
LYS 2780.0075
ALA 2790.0083
ALA 2800.0088
PHE 2810.0096
ASP 2820.0109
ALA 2830.0119
ALA 2840.0115
VAL 2850.0121
SER 2860.0144
GLY 2870.0149
LYS 2880.0157
SER 2890.0168
VAL 2900.0139
SER 2910.0160
GLY 2920.0143
ASP 2930.0114
VAL 2940.0117
GLU 2950.0085
LEU 2960.0089
THR 2970.0115
ASN 2980.0097
ILE 2990.0075
ILE 3000.0097
LYS 3010.0107
ASN 3020.0081
SER 3030.0077
SER 3040.0094
PHE 3050.0105
LYS 3060.0117
ALA 3070.0125
VAL 3080.0130
ILE 3090.0129
TYR 3100.0125
GLY 3110.0118
GLY 3120.0117
SER 3130.0127
ALA 3140.0135
LYS 3150.0152
ASP 3160.0145
GLU 3170.0140
VAL 3180.0139
GLN 3190.0138
ILE 3200.0136
ILE 3210.0131
ASP 3220.0123
GLY 3230.0115
ASN 3240.0104
LEU 3250.0106
GLY 3260.0107
ASP 3270.0110
LEU 3280.0112
ARG 3290.0115
ASP 3300.0112
ILE 3310.0116
LEU 3320.0113
LYS 3330.0112
LYS 3340.0113
GLY 3350.0120
ALA 3360.0107
THR 3370.0092
PHE 3380.0081
ASN 3390.0081
ARG 3400.0069
GLU 3410.0098
THR 3420.0099
PRO 3430.0082
GLY 3440.0086
VAL 3450.0092
PRO 3460.0091
ILE 3470.0102
ALA 3480.0102
TYR 3490.0090
THR 3500.0095
THR 3510.0099
ASN 3520.0106
PHE 3530.0128
LEU 3540.0123
LYS 3550.0162
ASP 3560.0149
ASN 3570.0119
GLU 3580.0121
LEU 3590.0114
ALA 3600.0127
VAL 3610.0127
ILE 3620.0129
LYS 3630.0148
ASN 3640.0135
ASN 3650.0127
SER 3660.0121
GLU 3670.0096
TYR 3680.0073
ILE 3690.0051
GLU 3700.0065
THR 3710.0049
THR 3720.0047
SER 3730.0098
LYS 3740.0123
ALA 3750.0130
TYR 3760.0213
THR 3770.0212
ASP 3780.0220
GLY 3790.0291
LYS 3800.0274
ILE 3810.0241
ASN 3820.0263
ILE 3830.0230
ASP 3840.0234
HIS 3850.0233
SER 3860.0255
GLY 3870.0222
GLY 3880.0261
TYR 3890.0234
VAL 3900.0226
ALA 3910.0180
GLN 3920.0157
PHE 3930.0157
ASN 3940.0150
ILE 3950.0187
SER 3960.0209
TRP 3970.0239
ASP 3980.0255
GLU 3990.0276
VAL 4000.0257
ASN 4010.0250
TYR 4020.0242
ASP 4030.0272
PRO 4040.0249
GLU 4050.0252
GLY 4060.0228
ASN 4070.0269
GLU 4080.0269
ILE 4090.0294
VAL 4100.0290
GLN 4110.0303
HIS 4120.0263
LYS 4130.0258
ASN 4140.0236
TRP 4150.0234
SER 4160.0248
GLU 4170.0225
ASN 4180.0180
ASN 4190.0144
LYS 4200.0196
SER 4210.0213
LYS 4220.0243
LEU 4230.0279
ALA 4240.0277
HIS 4250.0301
PHE 4260.0283
THR 4270.0271
SER 4280.0269
SER 4290.0288
ILE 4300.0245
TYR 4310.0275
LEU 4320.0272
PRO 4330.0256
GLY 4340.0246
ASN 4350.0254
ALA 4360.0254
ARG 4370.0243
ASN 4380.0232
ILE 4390.0218
ASN 4400.0181
VAL 4410.0166
TYR 4420.0117
ALA 4430.0115
LYS 4440.0098
GLU 4450.0145
CYS 4460.0188
THR 4470.0208
GLY 4480.0282
LEU 4490.0282
ALA 4500.0303
TRP 4510.0273
GLU 4520.0198
TRP 4530.0193
TRP 4540.0120
ARG 4550.0092
THR 4560.0039
VAL 4570.0079
ILE 4580.0090
ASP 4590.0089
ASP 4600.0138
ARG 4610.0160
ASN 4620.0201
LEU 4630.0213
PRO 4640.0242
LEU 4650.0255
VAL 4660.0278
LYS 4670.0299
ASN 4680.0282
ARG 4690.0259
ASN 4700.0243
ILE 4710.0204
SER 4720.0206
ILE 4730.0175
TRP 4740.0195
GLY 4750.0202
THR 4760.0219
THR 4770.0205
LEU 4780.0194
TYR 4790.0156
PRO 4800.0137
LYS 4810.0126
TYR 4820.0135
SER 4830.0165
ASN 4840.0190
LYS 4850.0231
VAL 4860.0267
ASP 4870.0307
ASN 4880.0335

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.