CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  6DNP_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000  ***

<R2> analysis for 240220091727167243

---  normal mode 7  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0585
THR 10.0158
ASP 20.0162
ARG 30.0145
VAL 40.0136
SER 50.0135
VAL 60.0116
GLY 70.0119
ASN 80.0126
LEU 90.0117
ARG 100.0126
ILE 110.0115
ALA 120.0124
ARG 130.0131
VAL 140.0124
LEU 150.0100
TYR 160.0102
ASP 170.0110
PHE 180.0097
VAL 190.0075
ASN 200.0084
ASN 210.0096
GLU 220.0089
ALA 230.0066
LEU 240.0054
PRO 250.0065
GLY 260.0060
THR 270.0038
ASP 280.0027
ILE 290.0025
ASP 300.0043
PRO 310.0063
ASP 320.0075
SER 330.0059
PHE 340.0050
TRP 350.0071
ALA 360.0078
GLY 370.0062
VAL 380.0064
ASP 390.0084
LYS 400.0081
VAL 410.0065
VAL 420.0074
ALA 430.0092
ASP 440.0086
LEU 450.0070
THR 460.0077
PRO 470.0090
GLN 480.0079
ASN 490.0063
GLN 500.0075
ALA 510.0082
LEU 520.0064
LEU 530.0060
ASN 540.0077
ALA 550.0077
ARG 560.0056
ASP 570.0067
GLU 580.0085
LEU 590.0080
GLN 600.0065
ALA 610.0083
GLN 620.0098
ILE 630.0088
ASP 640.0081
LYS 650.0105
TRP 660.0115
HIS 670.0104
ARG 680.0104
ARG 690.0132
ARG 700.0135
VAL 710.0126
ILE 720.0146
GLU 730.0159
PRO 740.0153
ILE 750.0138
ASP 760.0155
MET 770.0139
ASP 780.0152
ALA 790.0148
TYR 800.0126
ARG 810.0124
GLN 820.0137
PHE 830.0126
LEU 840.0107
THR 850.0117
GLU 860.0129
ILE 870.0113
GLY 880.0100
TYR 890.0081
LEU 900.0087
LEU 910.0086
PRO 920.0096
GLU 930.0077
PRO 940.0074
ASP 950.0084
ASP 960.0084
PHE 970.0073
THR 980.0071
ILE 990.0062
THR 1000.0062
THR 1010.0067
SER 1020.0072
GLY 1030.0072
VAL 1040.0076
ASP 1050.0092
ALA 1060.0097
GLU 1070.0087
ILE 1080.0078
THR 1090.0078
THR 1100.0088
THR 1110.0085
ALA 1120.0074
GLY 1130.0073
PRO 1140.0068
GLN 1150.0069
LEU 1160.0067
VAL 1170.0065
VAL 1180.0069
PRO 1190.0065
VAL 1200.0063
LEU 1210.0080
ASN 1220.0094
ALA 1230.0090
ARG 1240.0106
PHE 1250.0094
ALA 1260.0079
LEU 1270.0090
ASN 1280.0104
ALA 1290.0082
ALA 1300.0088
ASN 1310.0103
ALA 1320.0097
ARG 1330.0111
TRP 1340.0093
GLY 1350.0080
SER 1360.0075
LEU 1370.0071
TYR 1380.0137
ASP 1390.0160
ALA 1400.0106
LEU 1410.0119
TYR 1420.0211
GLY 1430.0206
THR 1440.0127
ASP 1450.0117
VAL 1460.0096
ILE 1470.0198
PRO 1480.0249
GLU 1490.0337
THR 1500.0424
ASP 1510.0519
GLY 1520.0535
ALA 1530.0424
GLU 1540.0425
LYS 1550.0402
GLY 1560.0502
PRO 1570.0585
THR 1580.0580
TYR 1590.0490
ASN 1600.0479
LYS 1610.0468
VAL 1620.0461
ARG 1630.0363
GLY 1640.0330
ASP 1650.0349
LYS 1660.0306
VAL 1670.0216
ILE 1680.0223
ALA 1690.0244
TYR 1700.0187
ALA 1710.0139
ARG 1720.0182
LYS 1730.0192
PHE 1740.0126
LEU 1750.0120
ASP 1760.0189
ASP 1770.0172
SER 1780.0123
VAL 1790.0138
PRO 1800.0204
LEU 1810.0237
SER 1820.0294
SER 1830.0329
GLY 1840.0323
SER 1850.0280
PHE 1860.0218
GLY 1870.0272
ASP 1880.0306
ALA 1890.0251
THR 1900.0264
GLY 1910.0195
PHE 1920.0123
THR 1930.0082
VAL 1940.0057
GLN 1950.0103
ASP 1960.0149
GLY 1970.0145
GLN 1980.0143
LEU 1990.0111
VAL 2000.0147
VAL 2010.0183
ALA 2020.0235
LEU 2030.0302
PRO 2040.0367
ASP 2050.0394
LYS 2060.0341
SER 2070.0270
THR 2080.0261
GLY 2090.0213
LEU 2100.0204
ALA 2110.0264
ASN 2120.0247
PRO 2130.0212
GLY 2140.0213
GLN 2150.0154
PHE 2160.0116
ALA 2170.0116
GLY 2180.0092
TYR 2190.0063
THR 2200.0102
GLY 2210.0123
ALA 2220.0090
ALA 2230.0023
GLU 2240.0062
SER 2250.0103
PRO 2260.0076
THR 2270.0125
SER 2280.0075
VAL 2290.0013
LEU 2300.0043
LEU 2310.0062
ILE 2320.0102
ASN 2330.0087
HIS 2340.0106
GLY 2350.0114
LEU 2360.0085
HIS 2370.0075
ILE 2380.0024
GLU 2390.0034
ILE 2400.0050
LEU 2410.0118
ILE 2420.0163
ASP 2430.0240
PRO 2440.0293
GLU 2450.0360
SER 2460.0350
GLN 2470.0398
VAL 2480.0330
GLY 2490.0298
THR 2500.0374
THR 2510.0385
ASP 2520.0314
ARG 2530.0309
ALA 2540.0236
GLY 2550.0241
VAL 2560.0198
LYS 2570.0207
ASP 2580.0147
VAL 2590.0078
ILE 2600.0067
LEU 2610.0048
GLU 2620.0072
SER 2630.0066
ALA 2640.0087
ILE 2650.0089
THR 2660.0080
THR 2670.0073
ILE 2680.0062
MET 2690.0058
ASP 2700.0050
PHE 2710.0045
GLU 2720.0039
ASP 2730.0047
SER 2740.0068
VAL 2750.0074
ALA 2760.0085
ALA 2770.0085
VAL 2780.0094
ASP 2790.0106
ALA 2800.0106
ALA 2810.0113
ASP 2820.0101
LYS 2830.0080
VAL 2840.0088
LEU 2850.0093
GLY 2860.0076
TYR 2870.0066
ARG 2880.0083
ASN 2890.0084
TRP 2900.0068
LEU 2910.0070
GLY 2920.0089
LEU 2930.0083
ASN 2940.0075
LYS 2950.0086
GLY 2960.0099
ASP 2970.0102
LEU 2980.0098
ALA 2990.0114
ALA 3000.0133
ARG 3010.0131
VAL 3020.0124
LEU 3030.0115
ASN 3040.0130
ARG 3050.0142
ASP 3060.0141
ARG 3070.0144
ASN 3080.0159
TYR 3090.0147
THR 3100.0140
ALA 3110.0152
PRO 3120.0131
GLY 3130.0173
GLY 3140.0169
GLY 3150.0208
GLN 3160.0209
PHE 3170.0183
THR 3180.0168
LEU 3190.0140
PRO 3200.0137
GLY 3210.0124
ARG 3220.0109
SER 3230.0095
LEU 3240.0089
MET 3250.0072
PHE 3260.0057
VAL 3270.0046
ARG 3280.0036
ASN 3290.0025
VAL 3300.0027
GLY 3310.0015
HIS 3320.0030
LEU 3330.0043
MET 3340.0053
THR 3350.0072
ASN 3360.0085
ASP 3370.0108
ALA 3380.0102
ILE 3390.0101
VAL 3400.0115
ASP 3410.0121
THR 3420.0145
ASP 3430.0150
GLY 3440.0143
SER 3450.0120
GLU 3460.0102
VAL 3470.0084
PHE 3480.0062
GLU 3490.0051
GLY 3500.0032
ILE 3510.0040
MET 3520.0049
ASP 3530.0033
ALA 3540.0017
LEU 3550.0028
PHE 3560.0040
THR 3570.0034
GLY 3580.0021
LEU 3590.0028
ILE 3600.0046
ALA 3610.0047
ILE 3620.0046
HIS 3630.0065
GLY 3640.0076
LEU 3650.0079
LYS 3660.0090
ALA 3670.0114
SER 3680.0124
PRO 3690.0131
LEU 3700.0114
ILE 3710.0105
ASN 3720.0090
SER 3730.0085
ARG 3740.0099
THR 3750.0092
GLY 3760.0079
SER 3770.0061
ILE 3780.0049
TYR 3790.0049
ILE 3800.0034
VAL 3810.0032
LYS 3820.0017
PRO 3830.0016
LYS 3840.0010
MET 3850.0020
HIS 3860.0034
GLY 3870.0044
PRO 3880.0046
ALA 3890.0053
GLU 3900.0037
VAL 3910.0033
ALA 3920.0041
PHE 3930.0044
THR 3940.0025
CYS 3950.0034
GLU 3960.0040
LEU 3970.0032
PHE 3980.0018
SER 3990.0033
ARG 4000.0035
VAL 4010.0019
GLU 4020.0015
ASP 4030.0026
VAL 4040.0025
LEU 4050.0008
GLY 4060.0011
LEU 4070.0024
PRO 4080.0041
GLN 4090.0043
ASN 4100.0045
THR 4110.0041
MET 4120.0031
LYS 4130.0042
ILE 4140.0036
GLY 4150.0040
ILE 4160.0034
MET 4170.0032
ASP 4180.0040
GLU 4190.0032
GLU 4200.0031
ARG 4210.0051
ARG 4220.0052
THR 4230.0044
THR 4240.0058
VAL 4250.0069
ASN 4260.0061
LEU 4270.0054
LYS 4280.0059
ALA 4290.0058
CYS 4300.0045
ILE 4310.0049
LYS 4320.0052
ALA 4330.0050
ALA 4340.0044
ALA 4350.0055
ASP 4360.0050
ARG 4370.0044
VAL 4380.0048
VAL 4390.0056
PHE 4400.0054
ILE 4410.0048
ASN 4420.0050
THR 4430.0051
GLY 4440.0044
PHE 4450.0058
LEU 4460.0050
ASP 4470.0033
ARG 4480.0041
THR 4490.0051
GLY 4500.0032
ASP 4510.0031
GLU 4520.0051
ILE 4530.0047
HIS 4540.0034
THR 4550.0053
SER 4560.0064
MET 4570.0054
GLU 4580.0073
ALA 4590.0089
GLY 4600.0085
PRO 4610.0078
MET 4620.0079
VAL 4630.0098
ARG 4640.0096
LYS 4650.0085
GLY 4660.0108
THR 4670.0113
MET 4680.0097
LYS 4690.0102
SER 4700.0119
GLN 4710.0110
PRO 4720.0118
TRP 4730.0094
ILE 4740.0087
LEU 4750.0099
ALA 4760.0094
TYR 4770.0069
GLU 4780.0072
ASP 4790.0081
HIS 4800.0072
ASN 4810.0057
VAL 4820.0064
ASP 4830.0067
ALA 4840.0059
GLY 4850.0059
LEU 4860.0067
ALA 4870.0068
ALA 4880.0064
GLY 4890.0070
PHE 4900.0067
SER 4910.0077
GLY 4920.0080
ARG 4930.0073
ALA 4940.0064
GLN 4950.0063
VAL 4960.0060
GLY 4970.0062
LYS 4980.0060
GLY 4990.0055
MET 5000.0057
TRP 5010.0070
THR 5020.0075
MET 5030.0067
THR 5040.0060
GLU 5050.0047
LEU 5060.0037
MET 5070.0024
ALA 5080.0039
ASP 5090.0040
MET 5100.0038
VAL 5110.0034
GLU 5120.0046
THR 5130.0040
LYS 5140.0042
ILE 5150.0045
ALA 5160.0048
GLN 5170.0049
PRO 5180.0055
ARG 5190.0056
ALA 5200.0053
GLY 5210.0064
ALA 5220.0060
SER 5230.0067
THR 5240.0062
ALA 5250.0061
TRP 5260.0059
VAL 5270.0060
PRO 5280.0059
SER 5290.0074
PRO 5300.0077
THR 5310.0060
ALA 5320.0051
ALA 5330.0060
THR 5340.0051
LEU 5350.0032
HIS 5360.0039
ALA 5370.0042
LEU 5380.0028
HIS 5390.0037
TYR 5400.0051
HIS 5410.0054
GLN 5420.0052
VAL 5430.0055
ASP 5440.0064
VAL 5450.0061
ALA 5460.0061
ALA 5470.0068
VAL 5480.0061
GLN 5490.0058
GLN 5500.0063
GLY 5510.0070
LEU 5520.0062
ALA 5530.0059
GLY 5540.0060
LYS 5550.0073
ARG 5560.0077
ARG 5570.0098
ALA 5580.0096
THR 5590.0101
ILE 5600.0095
GLU 5610.0117
GLN 5620.0111
LEU 5630.0091
LEU 5640.0094
THR 5650.0106
ILE 5660.0095
PRO 5670.0096
LEU 5680.0101
ALA 5690.0116
LYS 5700.0146
GLU 5710.0147
LEU 5720.0120
ALA 5730.0130
TRP 5740.0121
ALA 5750.0125
PRO 5760.0103
ASP 5770.0120
GLU 5780.0121
ILE 5790.0093
ARG 5800.0094
GLU 5810.0111
GLU 5820.0096
VAL 5830.0076
ASP 5840.0096
ASN 5850.0103
ASN 5860.0081
CYS 5870.0079
GLN 5880.0104
SER 5890.0094
ILE 5900.0077
LEU 5910.0097
GLY 5920.0112
TYR 5930.0095
VAL 5940.0090
VAL 5950.0116
ARG 5960.0120
TRP 5970.0104
VAL 5980.0113
ASP 5990.0140
GLN 6000.0145
GLY 6010.0114
VAL 6020.0108
GLY 6030.0083
CYS 6040.0090
SER 6050.0088
LYS 6060.0099
VAL 6070.0115
PRO 6080.0131
ASP 6090.0129
ILE 6100.0143
HIS 6110.0166
ASP 6120.0166
VAL 6130.0135
ALA 6140.0118
LEU 6150.0102
MET 6160.0083
GLU 6170.0084
ASP 6180.0067
ARG 6190.0047
ALA 6200.0042
THR 6210.0059
LEU 6220.0051
ARG 6230.0031
ILE 6240.0042
SER 6250.0052
SER 6260.0031
GLN 6270.0022
LEU 6280.0042
LEU 6290.0035
ALA 6300.0013
ASN 6310.0038
TRP 6320.0045
LEU 6330.0025
ARG 6340.0040
HIS 6350.0060
GLY 6360.0051
VAL 6370.0060
ILE 6380.0039
THR 6390.0014
SER 6400.0018
ALA 6410.0034
ASP 6420.0043
VAL 6430.0046
ARG 6440.0062
ALA 6450.0075
SER 6460.0082
LEU 6470.0088
GLU 6480.0107
ARG 6490.0117
MET 6500.0121
ALA 6510.0130
PRO 6520.0155
LEU 6530.0156
VAL 6540.0148
ASP 6550.0169
ARG 6560.0188
GLN 6570.0178
ASN 6580.0182
ALA 6590.0209
GLY 6600.0225
ASP 6610.0212
VAL 6620.0230
ALA 6630.0208
TYR 6640.0189
ARG 6650.0183
PRO 6660.0175
MET 6670.0150
ALA 6680.0155
PRO 6690.0178
ASN 6700.0162
PHE 6710.0134
ASP 6720.0134
ASP 6730.0157
SER 6740.0143
ILE 6750.0128
ALA 6760.0114
PHE 6770.0106
LEU 6780.0097
ALA 6790.0084
ALA 6800.0071
GLN 6810.0062
GLU 6820.0057
LEU 6830.0041
ILE 6840.0026
LEU 6850.0029
SER 6860.0037
GLY 6870.0017
ALA 6880.0027
GLN 6890.0045
GLN 6900.0037
PRO 6910.0040
ASN 6920.0027
GLY 6930.0012
TYR 6940.0018
THR 6950.0035
GLU 6960.0048
PRO 6970.0062
ILE 6980.0068
LEU 6990.0075
HIS 7000.0085
ARG 7010.0102
ARG 7020.0109
ARG 7030.0116
ARG 7040.0129
GLU 7050.0145
PHE 7060.0152
LYS 7070.0163
ALA 7080.0180
ARG 7090.0198
ALA 7100.0209
ALA 7110.0226
GLU 7120.0248

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.