CNRS Nantes University US2B US2B
home |  start a new run |  job status |  references&downloads |  examples |  help  

Should you encounter any unexpected behaviour,
please let us know.


***  1IKQ_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000  ***

<R2> analysis for 240220092014169949

---  normal mode 9  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0375
GLU 10.0180
GLU 20.0164
ALA 30.0159
PHE 40.0135
ASP 50.0132
LEU 60.0099
TRP 70.0113
ASN 80.0133
GLU 90.0112
CYS 100.0082
ALA 110.0099
LYS 120.0098
ALA 130.0070
CYS 140.0061
VAL 150.0043
LEU 160.0067
ASP 170.0087
LEU 180.0107
LYS 190.0132
ASP 200.0159
GLY 210.0158
VAL 220.0145
ARG 230.0126
SER 240.0133
SER 250.0126
ARG 260.0143
MET 270.0122
SER 280.0148
VAL 290.0142
ASP 300.0168
PRO 310.0189
ALA 320.0171
ILE 330.0156
ALA 340.0185
ASP 350.0189
THR 360.0162
ASN 370.0166
GLY 380.0142
GLN 390.0116
GLY 400.0094
VAL 410.0073
LEU 420.0075
HIS 430.0060
TYR 440.0051
SER 450.0043
MET 460.0033
VAL 470.0030
LEU 480.0016
GLU 490.0035
GLY 500.0053
GLY 510.0072
ASN 520.0107
ASP 530.0103
ALA 540.0117
LEU 550.0096
LYS 560.0105
LEU 570.0082
ALA 580.0098
ILE 590.0095
ASP 600.0127
ASN 610.0132
ALA 620.0104
LEU 630.0085
SER 640.0094
ILE 650.0083
THR 660.0104
SER 670.0097
ASP 680.0119
GLY 690.0103
LEU 700.0122
THR 710.0120
ILE 720.0097
ARG 730.0122
ARG 740.0111
LEU 750.0084
GLU 760.0103
GLY 770.0092
GLY 780.0105
VAL 790.0120
GLU 800.0149
PRO 810.0165
ASN 820.0184
LYS 830.0163
PRO 840.0135
VAL 850.0111
ARG 860.0112
TYR 870.0095
SER 880.0105
TYR 890.0106
THR 900.0126
ARG 910.0116
GLN 920.0139
ALA 930.0135
ARG 940.0117
GLY 950.0092
SER 960.0065
TRP 970.0056
SER 980.0038
LEU 990.0013
ASN 1000.0016
TRP 1010.0014
LEU 1020.0030
VAL 1030.0052
PRO 1040.0061
ILE 1050.0092
GLY 1060.0104
HIS 1070.0100
GLU 1080.0071
LYS 1090.0063
PRO 1100.0041
SER 1110.0061
ASN 1120.0044
ILE 1130.0029
LYS 1140.0007
VAL 1150.0019
PHE 1160.0038
ILE 1170.0052
HIS 1180.0071
GLU 1190.0090
LEU 1200.0096
ASN 1210.0122
ALA 1220.0120
GLY 1230.0129
ASN 1240.0103
GLN 1250.0123
LEU 1260.0118
SER 1270.0136
HIS 1280.0143
MET 1290.0120
MET 1300.0094
SER 1310.0083
PRO 1320.0077
ILE 1330.0053
TYR 1340.0046
THR 1350.0037
ILE 1360.0050
GLU 1370.0069
MET 1380.0084
GLY 1390.0109
ASP 1400.0112
GLU 1410.0141
LEU 1420.0123
LEU 1430.0098
ALA 1440.0123
LYS 1450.0134
LEU 1460.0103
ALA 1470.0108
ARG 1480.0137
ASP 1490.0147
ALA 1500.0124
THR 1510.0127
PHE 1520.0101
PHE 1530.0113
VAL 1540.0098
ARG 1550.0116
ALA 1560.0118
HIS 1570.0139
GLU 1580.0169
SER 1590.0149
ASN 1600.0171
GLU 1610.0136
MET 1620.0134
GLN 1630.0103
PRO 1640.0093
THR 1650.0058
LEU 1660.0040
ALA 1670.0010
ILE 1680.0027
SER 1690.0050
HIS 1700.0072
ALA 1710.0066
GLY 1720.0086
VAL 1730.0090
SER 1740.0100
VAL 1750.0106
VAL 1760.0106
VAL 1770.0123
MET 1780.0105
ALA 1790.0117
GLN 1800.0092
LYS 1810.0076
ARG 1820.0059
TRP 1830.0036
SER 1840.0029
GLU 1850.0047
TRP 1860.0025
ALA 1870.0032
SER 1880.0057
GLY 1890.0069
LYS 1900.0074
VAL 1910.0055
LEU 1920.0063
CYS 1930.0089
LEU 1940.0082
LEU 1950.0064
ASP 1960.0076
PRO 1970.0103
LEU 1980.0106
ASP 1990.0132
GLY 2000.0125
VAL 2010.0102
TYR 2020.0107
ASN 2030.0128
TYR 2040.0118
LEU 2050.0105
ALA 2060.0107
GLN 2070.0113
GLN 2080.0112
ARG 2090.0108
CYS 2100.0097
ASN 2110.0113
ASN 2120.0105
LEU 2130.0100
ASP 2140.0121
ASP 2150.0121
THR 2160.0105
TRP 2170.0110
GLU 2180.0129
GLU 2190.0128
GLY 2200.0127
LYS 2210.0148
ILE 2220.0143
TYR 2230.0121
ARG 2240.0138
VAL 2250.0134
LEU 2260.0137
ALA 2270.0130
GLY 2280.0117
ASN 2290.0106
PRO 2300.0085
ALA 2310.0081
LYS 2320.0108
HIS 2330.0107
ASP 2340.0136
LEU 2350.0142
ASP 2360.0169
ILE 2370.0162
ILE 2380.0184
LYS 2390.0168
PRO 2400.0140
THR 2410.0136
VAL 2420.0124
ILE 2430.0103
SER 2440.0095
HIS 2450.0068
ARG 2460.0068
LEU 2470.0062
HIS 2480.0074
PHE 2490.0088
PRO 2500.0102
GLU 2510.0131
GLY 2520.0142
GLY 2530.0142
SER 2540.0116
LEU 2550.0124
ALA 2560.0118
ALA 2570.0088
LEU 2580.0083
THR 2590.0088
ALA 2600.0071
HIS 2610.0044
GLN 2620.0022
ALA 2630.0025
CYS 2640.0027
HIS 2650.0016
LEU 2660.0025
PRO 2670.0051
LEU 2680.0064
GLU 2690.0100
THR 2700.0085
PHE 2710.0097
THR 2720.0134
ARG 2730.0153
HIS 2740.0171
ARG 2750.0133
GLN 2760.0084
PRO 2770.0053
ARG 2780.0035
GLY 2790.0015
TRP 2800.0036
GLU 2810.0058
GLN 2820.0060
LEU 2830.0066
GLU 2840.0101
GLN 2850.0096
CYS 2860.0081
GLY 2870.0104
TYR 2880.0090
PRO 2890.0105
VAL 2900.0092
GLN 2910.0113
ARG 2920.0107
LEU 2930.0084
VAL 2940.0111
ALA 2950.0124
LEU 2960.0094
TYR 2970.0103
LEU 2980.0134
ALA 2990.0115
ALA 3000.0104
ARG 3010.0135
LEU 3020.0163
SER 3030.0196
TRP 3040.0220
ASN 3050.0248
GLN 3060.0218
VAL 3070.0207
ASP 3080.0249
GLN 3090.0261
VAL 3100.0222
ILE 3110.0238
ARG 3120.0283
ASN 3130.0276
ALA 3140.0243
LEU 3150.0288
ALA 3160.0321
SER 3170.0304
PRO 3180.0289
GLY 3190.0263
SER 3200.0239
GLY 3210.0203
GLY 3220.0193
ASP 3230.0196
LEU 3240.0185
GLY 3250.0201
GLU 3260.0250
ALA 3270.0254
ILE 3280.0235
ARG 3290.0268
GLU 3300.0306
GLN 3310.0310
PRO 3320.0284
GLU 3330.0309
GLN 3340.0296
ALA 3350.0248
ARG 3360.0256
LEU 3370.0272
ALA 3380.0241
LEU 3390.0203
THR 3400.0227
LEU 3410.0221
LEU 3420.0192
ALA 3430.0178
ALA 3440.0199
ALA 3450.0170
GLU 3460.0146
SER 3470.0151
GLU 3480.0170
ARG 3490.0154
PHE 3500.0140
VAL 3510.0167
ARG 3520.0179
GLN 3530.0158
GLY 3540.0162
THR 3550.0179
GLY 3560.0171
ASN 3570.0155
ASP 3580.0171
GLU 3590.0173
ALA 3600.0165
GLY 3610.0142
ALA 3620.0138
ALA 3630.0133
ASN 3640.0116
ALA 3650.0112
ASP 3660.0088
VAL 3670.0084
VAL 3680.0085
SER 3690.0092
LEU 3700.0105
THR 3710.0107
CYS 3720.0123
PRO 3730.0125
VAL 3740.0107
ALA 3750.0094
ALA 3760.0109
GLY 3770.0118
GLU 3780.0124
CYS 3790.0126
ALA 3800.0133
GLY 3810.0122
PRO 3820.0107
ALA 3830.0120
ASP 3840.0109
SER 3850.0106
GLY 3860.0125
ASP 3870.0118
ALA 3880.0105
LEU 3890.0105
LEU 3900.0107
GLU 3910.0104
ARG 3920.0120
ASN 3930.0121
TYR 3940.0114
PRO 3950.0108
THR 3960.0099
GLY 3970.0077
ALA 3980.0105
GLU 3990.0117
PHE 4000.0098
LEU 4010.0099
GLY 4020.0107
ASP 4030.0127
GLY 4040.0143
GLY 4050.0154
ASP 4060.0135
VAL 4070.0098
SER 4080.0083
PHE 4090.0052
SER 4100.0041
THR 4110.0025
ARG 4120.0027
GLY 4130.0025
THR 4140.0040
GLN 4150.0075
ASN 4160.0109
TRP 4170.0092
THR 4180.0119
VAL 4190.0128
GLU 4200.0154
ARG 4210.0123
LEU 4220.0095
LEU 4230.0121
GLN 4240.0132
ALA 4250.0097
HIS 4260.0080
ARG 4270.0107
GLN 4280.0107
LEU 4290.0064
GLU 4300.0059
GLU 4310.0085
ARG 4320.0080
GLY 4330.0070
TYR 4340.0043
VAL 4350.0032
PHE 4360.0043
VAL 4370.0061
GLY 4380.0076
TYR 4390.0071
HIS 4400.0071
GLY 4410.0087
THR 4420.0093
PHE 4430.0094
LEU 4440.0073
GLU 4450.0110
ALA 4460.0107
ALA 4470.0068
GLN 4480.0090
SER 4490.0109
ILE 4500.0087
VAL 4510.0077
PHE 4520.0110
GLY 4530.0125
GLY 4540.0101
VAL 4550.0094
ARG 4560.0127
ALA 4570.0149
ARG 4580.0163
SER 4590.0191
GLN 4600.0184
ASP 4610.0221
LEU 4620.0231
ASP 4630.0272
ALA 4640.0269
ILE 4650.0261
TRP 4660.0224
ARG 4670.0202
GLY 4680.0160
PHE 4690.0120
TYR 4700.0121
ILE 4710.0097
ALA 4720.0117
GLY 4730.0131
ASP 4740.0160
PRO 4750.0134
ALA 4760.0170
LEU 4770.0172
ALA 4780.0128
TYR 4790.0128
GLY 4800.0165
TYR 4810.0145
ALA 4820.0108
GLN 4830.0142
ASP 4840.0179
GLN 4850.0174
GLU 4860.0216
PRO 4870.0207
ASP 4880.0197
ALA 4890.0247
ARG 4900.0221
GLY 4910.0227
ARG 4920.0169
ILE 4930.0154
ARG 4940.0110
ASN 4950.0083
GLY 4960.0073
ALA 4970.0039
LEU 4980.0048
LEU 4990.0026
ARG 5000.0027
VAL 5010.0018
TYR 5020.0013
VAL 5030.0025
PRO 5040.0038
ARG 5050.0024
SER 5060.0029
SER 5070.0042
LEU 5080.0043
PRO 5090.0072
GLY 5100.0102
PHE 5110.0111
TYR 5120.0159
ARG 5130.0197
THR 5140.0245
SER 5150.0284
LEU 5160.0306
THR 5170.0301
LEU 5180.0275
ALA 5190.0317
ALA 5200.0348
PRO 5210.0375
GLU 5220.0361
ALA 5230.0310
ALA 5240.0303
GLY 5250.0321
GLU 5260.0294
VAL 5270.0253
GLU 5280.0265
ARG 5290.0270
LEU 5300.0227
ILE 5310.0203
GLY 5320.0230
HIS 5330.0252
PRO 5340.0284
LEU 5350.0263
PRO 5360.0242
LEU 5370.0190
ARG 5380.0171
LEU 5390.0124
ASP 5400.0126
ALA 5410.0129
ILE 5420.0167
THR 5430.0177
GLY 5440.0223
PRO 5450.0260
GLU 5460.0271
GLU 5470.0322
GLU 5480.0354
GLY 5490.0341
GLY 5500.0295
ARG 5510.0244
LEU 5520.0209
GLU 5530.0170
THR 5540.0141
ILE 5550.0144
LEU 5560.0118
GLY 5570.0136
TRP 5580.0140
PRO 5590.0139
LEU 5600.0094
ALA 5610.0082
GLU 5620.0100
ARG 5630.0084
THR 5640.0061
VAL 5650.0057
VAL 5660.0039
ILE 5670.0040
PRO 5680.0031
SER 5690.0049
ALA 5700.0086
ILE 5710.0094
PRO 5720.0089
THR 5730.0083
ASP 5740.0108
PRO 5750.0092
ARG 5760.0132
ASN 5770.0163
VAL 5780.0159
GLY 5790.0196
GLY 5800.0204
ASP 5810.0203
LEU 5820.0175
ASP 5830.0199
PRO 5840.0211
SER 5850.0217
SER 5860.0175
ILE 5870.0160
PRO 5880.0167
ASP 5890.0188
LYS 5900.0168
GLU 5910.0129
GLN 5920.0150
ALA 5930.0157
ILE 5940.0121
SER 5950.0107
ALA 5960.0121
LEU 5970.0119
PRO 5980.0110
ASP 5990.0134
TYR 6000.0139
ALA 6010.0156
SER 6020.0206
GLN 6030.0208
PRO 6040.0203
GLY 6050.0156
LYS 6060.0186

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.