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***  TLR4-MD2  ***

<R2> analysis for 2404080903442958768

---  normal mode 10  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0338
GLU 270.0180
PRO 280.0171
CYS 290.0157
VAL 300.0163
GLU 310.0178
VAL 320.0175
VAL 330.0187
PRO 340.0200
ASN 350.0191
ILE 360.0172
THR 370.0156
TYR 380.0148
GLN 390.0128
CYS 400.0125
MET 410.0107
GLU 420.0104
LEU 430.0124
ASN 440.0121
PHE 450.0123
TYR 460.0120
LYS 470.0123
ILE 480.0120
PRO 490.0141
ASP 500.0156
ASN 510.0176
LEU 520.0168
PRO 530.0175
PHE 540.0163
SER 550.0167
THR 560.0151
LYS 570.0138
ASN 580.0128
LEU 590.0116
ASP 600.0102
LEU 610.0094
SER 620.0077
PHE 630.0074
ASN 640.0089
PRO 650.0090
LEU 660.0090
ARG 670.0079
HIS 680.0081
LEU 690.0072
GLY 700.0081
SER 710.0080
TYR 720.0088
SER 730.0094
PHE 740.0099
PHE 750.0116
SER 760.0136
PHE 770.0128
PRO 780.0122
GLU 790.0131
LEU 800.0116
GLN 810.0111
VAL 820.0101
LEU 830.0085
ASP 840.0076
LEU 850.0062
SER 860.0051
ARG 870.0047
CYS 880.0061
GLU 890.0058
ILE 900.0054
GLN 910.0056
THR 920.0055
ILE 930.0048
GLU 940.0054
ASP 950.0046
GLY 960.0052
ALA 970.0062
TYR 980.0066
GLN 990.0066
SER 1000.0086
LEU 1010.0086
SER 1020.0087
HIS 1030.0102
LEU 1040.0089
SER 1050.0089
THR 1060.0079
LEU 1070.0061
ILE 1080.0053
LEU 1090.0036
THR 1100.0030
GLY 1110.0022
ASN 1120.0028
PRO 1130.0032
ILE 1140.0031
GLN 1150.0049
SER 1160.0048
LEU 1170.0029
ALA 1180.0034
LEU 1190.0022
GLY 1200.0017
ALA 1210.0027
PHE 1220.0031
SER 1230.0034
GLY 1240.0053
LEU 1250.0060
SER 1260.0066
SER 1270.0080
LEU 1280.0069
GLN 1290.0080
LYS 1300.0072
LEU 1310.0051
VAL 1320.0046
ALA 1330.0027
VAL 1340.0028
GLU 1350.0013
THR 1360.0005
ASN 1370.0015
LEU 1380.0019
ALA 1390.0030
SER 1400.0038
LEU 1410.0041
GLU 1420.0044
ASN 1430.0031
PHE 1440.0023
PRO 1450.0018
ILE 1460.0032
GLY 1470.0040
HIS 1480.0041
LEU 1490.0051
LYS 1500.0066
THR 1510.0076
LEU 1520.0069
LYS 1530.0082
GLU 1540.0073
LEU 1550.0057
ASN 1560.0052
VAL 1570.0041
ALA 1580.0044
HIS 1590.0034
ASN 1600.0031
LEU 1610.0036
ILE 1620.0045
GLN 1630.0053
SER 1640.0061
PHE 1650.0068
LYS 1660.0071
LEU 1670.0067
PRO 1680.0060
GLU 1690.0065
TYR 1700.0058
PHE 1710.0066
SER 1720.0075
ASN 1730.0068
LEU 1740.0069
THR 1750.0083
ASN 1760.0086
LEU 1770.0079
GLU 1780.0088
HIS 1790.0079
LEU 1800.0070
ASP 1810.0063
LEU 1820.0059
SER 1830.0059
SER 1840.0052
ASN 1850.0051
LYS 1860.0054
ILE 1870.0064
GLN 1880.0067
SER 1890.0072
ILE 1900.0075
TYR 1910.0080
CYS 1920.0085
THR 1930.0084
ASP 1940.0079
LEU 1950.0084
ARG 1960.0089
VAL 1970.0083
LEU 1980.0089
HIS 1990.0099
GLN 2000.0098
MET 2010.0097
PRO 2020.0107
LEU 2030.0107
LEU 2040.0099
ASN 2050.0099
LEU 2060.0090
SER 2070.0088
LEU 2080.0082
ASP 2090.0075
LEU 2100.0073
SER 2110.0070
LEU 2120.0064
ASN 2130.0066
PRO 2140.0066
MET 2150.0070
ASN 2160.0072
PHE 2170.0076
ILE 2180.0079
GLN 2190.0083
PRO 2200.0089
GLY 2210.0093
ALA 2220.0087
PHE 2230.0091
LYS 2240.0099
GLU 2250.0102
ILE 2260.0096
ARG 2270.0098
LEU 2280.0094
HIS 2290.0095
LYS 2300.0089
LEU 2310.0086
THR 2320.0083
LEU 2330.0081
ARG 2340.0078
ASN 2350.0073
ASN 2360.0074
PHE 2370.0074
ASP 2380.0071
SER 2390.0068
LEU 2400.0069
ASN 2410.0070
VAL 2420.0072
MET 2430.0072
LYS 2440.0073
THR 2450.0076
CYS 2460.0078
ILE 2470.0079
GLN 2480.0082
GLY 2490.0084
LEU 2500.0084
ALA 2510.0091
GLY 2520.0095
LEU 2530.0092
GLU 2540.0095
VAL 2550.0091
HIS 2560.0091
ARG 2570.0087
LEU 2580.0085
VAL 2590.0084
LEU 2600.0081
GLY 2610.0078
GLU 2620.0078
PHE 2630.0075
ARG 2640.0075
ASN 2650.0071
GLU 2660.0071
GLY 2670.0074
ASN 2680.0072
LEU 2690.0071
GLU 2700.0068
LYS 2710.0066
PHE 2720.0064
ASP 2730.0058
LYS 2740.0055
SER 2750.0064
ALA 2760.0065
LEU 2770.0067
GLU 2780.0068
GLY 2790.0074
LEU 2800.0075
CYS 2810.0076
ASN 2820.0081
LEU 2830.0085
THR 2840.0086
ILE 2850.0084
GLU 2860.0085
GLU 2870.0082
PHE 2880.0079
ARG 2890.0078
LEU 2900.0076
ALA 2910.0082
TYR 2920.0079
LEU 2930.0076
ASP 2940.0073
TYR 2950.0069
TYR 2960.0064
LEU 2970.0057
ASP 2980.0050
ASP 2990.0046
ILE 3000.0048
ILE 3010.0042
ASP 3020.0043
LEU 3030.0054
PHE 3040.0056
ASN 3050.0052
CYS 3060.0060
LEU 3070.0060
THR 3080.0051
ASN 3090.0054
VAL 3100.0062
SER 3110.0061
SER 3120.0067
PHE 3130.0065
SER 3140.0071
LEU 3150.0070
VAL 3160.0078
SER 3170.0079
VAL 3180.0070
THR 3190.0069
ILE 3200.0059
GLU 3210.0060
ARG 3220.0050
VAL 3230.0048
LYS 3240.0043
ASP 3250.0040
PHE 3260.0048
SER 3270.0047
TYR 3280.0036
ASN 3290.0036
PHE 3300.0038
GLY 3310.0036
TRP 3320.0047
GLN 3330.0053
HIS 3340.0065
LEU 3350.0059
GLU 3360.0070
LEU 3370.0070
VAL 3380.0083
ASN 3390.0090
CYS 3400.0077
LYS 3410.0078
PHE 3420.0069
GLY 3430.0079
GLN 3440.0075
PHE 3450.0080
PRO 3460.0069
THR 3470.0068
LEU 3480.0062
LYS 3490.0056
LEU 3500.0049
LYS 3510.0050
SER 3520.0045
LEU 3530.0056
LYS 3540.0066
ARG 3550.0074
LEU 3560.0075
THR 3570.0085
PHE 3580.0085
THR 3590.0097
SER 3600.0107
ASN 3610.0092
LYS 3620.0096
GLY 3630.0098
GLY 3640.0101
ASN 3650.0117
ALA 3660.0112
PHE 3670.0112
SER 3680.0106
GLU 3690.0101
VAL 3700.0089
ASP 3710.0080
LEU 3720.0075
PRO 3730.0075
SER 3740.0069
LEU 3750.0081
GLU 3760.0088
PHE 3770.0093
LEU 3780.0098
ASP 3790.0103
LEU 3800.0107
SER 3810.0119
ARG 3820.0126
ASN 3830.0120
GLY 3840.0135
LEU 3850.0127
SER 3860.0138
PHE 3870.0143
LYS 3880.0151
GLY 3890.0148
CYS 3900.0142
CYS 3910.0136
SER 3920.0128
GLN 3930.0115
SER 3940.0113
ASP 3950.0114
PHE 3960.0103
GLY 3970.0097
THR 3980.0096
THR 3990.0105
SER 4000.0100
LEU 4010.0105
LYS 4020.0108
TYR 4030.0111
LEU 4040.0118
ASP 4050.0124
LEU 4060.0131
SER 4070.0138
PHE 4080.0145
ASN 4090.0145
GLY 4100.0155
VAL 4110.0165
ILE 4120.0158
THR 4130.0162
MET 4140.0157
SER 4150.0154
SER 4160.0147
ASN 4170.0143
PHE 4180.0135
LEU 4190.0131
GLY 4200.0122
LEU 4210.0121
GLU 4220.0123
GLN 4230.0117
LEU 4240.0121
GLU 4250.0119
HIS 4260.0123
LEU 4270.0132
ASP 4280.0138
PHE 4290.0147
GLN 4300.0150
HIS 4310.0158
SER 4320.0160
ASN 4330.0169
LEU 4340.0165
LYS 4350.0171
GLN 4360.0169
MET 4370.0159
SER 4380.0159
GLU 4390.0163
PHE 4400.0155
SER 4410.0146
VAL 4420.0147
PHE 4430.0140
LEU 4440.0139
SER 4450.0135
LEU 4460.0130
ARG 4470.0127
ASN 4480.0123
LEU 4490.0127
ILE 4500.0123
TYR 4510.0128
LEU 4520.0137
ASP 4530.0143
ILE 4540.0152
SER 4550.0154
HIS 4560.0164
THR 4570.0169
HIS 4580.0171
THR 4590.0166
ARG 4600.0162
VAL 4610.0151
ALA 4620.0154
PHE 4630.0143
ASN 4640.0131
GLY 4650.0135
ILE 4660.0140
PHE 4670.0136
ASN 4680.0135
GLY 4690.0132
LEU 4700.0128
SER 4710.0121
SER 4720.0120
LEU 4730.0124
GLU 4740.0120
VAL 4750.0128
LEU 4760.0135
LYS 4770.0143
MET 4780.0148
ALA 4790.0152
GLY 4800.0163
ASN 4810.0161
SER 4820.0154
PHE 4830.0141
GLN 4840.0143
GLU 4850.0130
ASN 4860.0124
PHE 4870.0104
LEU 4880.0104
PRO 4890.0104
ASP 4900.0099
ILE 4910.0115
PHE 4920.0107
THR 4930.0099
GLU 4940.0107
LEU 4950.0111
ARG 4960.0098
ASN 4970.0103
LEU 4980.0109
THR 4990.0111
PHE 5000.0123
LEU 5010.0125
ASP 5020.0137
LEU 5030.0134
SER 5040.0146
GLN 5050.0158
CYS 5060.0147
GLN 5070.0141
LEU 5080.0116
GLU 5090.0096
GLN 5100.0078
LEU 5110.0074
SER 5120.0068
PRO 5130.0052
THR 5140.0060
ALA 5150.0074
PHE 5160.0073
ASN 5170.0058
SER 5180.0069
LEU 5190.0080
SER 5200.0069
SER 5210.0086
LEU 5220.0096
GLN 5230.0109
VAL 5240.0125
LEU 5250.0119
ASN 5260.0137
MET 5270.0127
SER 5280.0153
HIS 5290.0165
ASN 5300.0138
ASN 5310.0126
PHE 5320.0099
PHE 5330.0094
SER 5340.0082
LEU 5350.0093
ASP 5360.0074
THR 5370.0075
PHE 5380.0051
PRO 5390.0042
TYR 5400.0058
LYS 5410.0048
CYS 5420.0040
LEU 5430.0061
ASN 5440.0061
SER 5450.0084
LEU 5460.0095
GLN 5470.0123
VAL 5480.0140
LEU 5490.0129
ASP 5500.0153
TYR 5510.0142
SER 5520.0174
LEU 5530.0185
ASN 5540.0151
HIS 5550.0143
ILE 5560.0129
MET 5570.0142
THR 5580.0118
SER 5590.0106
LYS 5600.0085
LYS 5610.0100
GLN 5620.0132
GLU 5630.0113
LEU 5640.0122
GLN 5650.0125
HIS 5660.0089
PHE 5670.0094
PRO 5680.0083
SER 5690.0098
SER 5700.0108
LEU 5710.0119
ALA 5720.0156
PHE 5730.0173
LEU 5740.0161
ASN 5750.0186
LEU 5760.0179
THR 5770.0216
GLN 5780.0222
ASN 5790.0194
ASP 5800.0186
PHE 5810.0187
ALA 5820.0191
CYS 5830.0238
THR 5840.0241
CYS 5850.0250
GLU 5860.0212
HIS 5870.0194
GLN 5880.0229
SER 5890.0203
PHE 5900.0176
LEU 5910.0210
GLN 5920.0228
TRP 5930.0195
ILE 5940.0204
LYS 5950.0242
ASP 5960.0228
GLN 5970.0208
ARG 5980.0233
GLN 5990.0224
LEU 6000.0192
LEU 6010.0209
VAL 6020.0238
GLU 6030.0275
VAL 6040.0278
GLU 6050.0311
ARG 6060.0282
MET 6070.0251
GLU 6080.0271
CYS 6090.0253
ALA 6100.0236
THR 6110.0224
PRO 6120.0267
SER 6130.0285
ASP 6140.0325
LYS 6150.0314
GLN 6160.0297
GLY 6170.0313
MET 6180.0321
PRO 6190.0299
VAL 6200.0265
LEU 6210.0278
SER 6220.0315
LEU 6230.0314
ASN 6240.0338
ILE 6250.0310
THR 6260.0334
CYS 6270.0317
GLN 190.0196
LYS 200.0181
GLN 210.0173
TYR 220.0143
TRP 230.0135
VAL 240.0109
CYS 250.0112
ASN 260.0130
SER 270.0128
SER 280.0154
ASP 290.0181
ALA 300.0176
SER 310.0166
ILE 320.0153
SER 330.0155
TYR 340.0155
THR 350.0162
TYR 360.0153
CYS 370.0167
ASP 380.0150
LYS 390.0152
MET 400.0126
GLN 410.0123
TYR 420.0094
PRO 430.0089
ILE 440.0070
SER 450.0053
ILE 460.0058
ASN 470.0048
VAL 480.0066
ASN 490.0056
PRO 500.0070
CYS 510.0097
ILE 520.0130
GLU 530.0158
LEU 540.0193
LYS 550.0206
GLY 560.0190
SER 570.0154
LYS 580.0138
GLY 590.0100
LEU 600.0078
LEU 610.0067
HIS 620.0037
ILE 630.0031
PHE 640.0018
TYR 650.0034
ILE 660.0035
PRO 670.0048
ARG 680.0058
ARG 690.0061
ASP 700.0058
LEU 710.0059
LYS 720.0070
GLN 730.0088
LEU 740.0084
TYR 750.0115
PHE 760.0129
ASN 770.0159
LEU 780.0174
TYR 790.0204
ILE 800.0219
THR 810.0246
VAL 820.0266
ASN 830.0287
THR 840.0294
MET 850.0293
ASN 860.0270
LEU 870.0256
PRO 880.0246
LYS 890.0216
ARG 900.0199
LYS 910.0173
GLU 920.0148
VAL 930.0130
ILE 940.0098
CYS 950.0081
ARG 960.0095
GLY 970.0094
SER 980.0102
ASP 990.0088
ASP 1000.0082
ASP 1010.0079
TYR 1020.0071
SER 1030.0063
PHE 1040.0054
CYS 1050.0063
ARG 1060.0061
ALA 1070.0048
LEU 1080.0044
LYS 1090.0047
GLY 1100.0031
GLU 1110.0020
THR 1120.0007
VAL 1130.0021
ASN 1140.0020
THR 1150.0042
THR 1160.0058
ILE 1170.0076
SER 1180.0095
PHE 1190.0136
SER 1200.0164
PHE 1210.0196
LYS 1220.0223
GLY 1230.0257
ILE 1240.0263
LYS 1250.0270
PHE 1260.0266
SER 1270.0286
LYS 1280.0276
GLY 1290.0270
LYS 1300.0251
TYR 1310.0231
LYS 1320.0214
CYS 1330.0191
VAL 1340.0176
VAL 1350.0147
GLU 1360.0139
ALA 1370.0113
ILE 1380.0106
SER 1390.0088
GLY 1400.0077
SER 1410.0087
PRO 1420.0098
GLU 1430.0103
GLU 1440.0106
MET 1450.0112
LEU 1460.0092
PHE 1470.0108
CYS 1480.0136
LEU 1490.0143
GLU 1500.0170
PHE 1510.0170
VAL 1520.0192
ILE 1530.0191
LEU 1540.0212
HIS 1550.0222
GLN 1560.0233
PRO 1570.0240
ASN 1580.0243

If you find results from this site helpful for your research, please cite one of our papers:

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.