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***  TLR4-MD2  ***

<R2> analysis for 2404080903442958768

---  normal mode 7  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0355
GLU 270.0227
PRO 280.0214
CYS 290.0203
VAL 300.0200
GLU 310.0210
VAL 320.0198
VAL 330.0209
PRO 340.0227
ASN 350.0230
ILE 360.0210
THR 370.0195
TYR 380.0195
GLN 390.0179
CYS 400.0184
MET 410.0166
GLU 420.0163
LEU 430.0182
ASN 440.0184
PHE 450.0194
TYR 460.0198
LYS 470.0207
ILE 480.0205
PRO 490.0216
ASP 500.0232
ASN 510.0240
LEU 520.0230
PRO 530.0235
PHE 540.0233
SER 550.0226
THR 560.0210
LYS 570.0193
ASN 580.0180
LEU 590.0180
ASP 600.0166
LEU 610.0169
SER 620.0151
PHE 630.0148
ASN 640.0166
PRO 650.0171
LEU 660.0180
ARG 670.0175
HIS 680.0188
LEU 690.0186
GLY 700.0202
SER 710.0210
TYR 720.0213
SER 730.0206
PHE 740.0204
PHE 750.0221
SER 760.0227
PHE 770.0213
PRO 780.0214
GLU 790.0206
LEU 800.0189
GLN 810.0172
VAL 820.0161
LEU 830.0161
ASP 840.0150
LEU 850.0150
SER 860.0134
ARG 870.0133
CYS 880.0151
GLU 890.0151
ILE 900.0158
GLN 910.0161
THR 920.0172
ILE 930.0174
GLU 940.0188
ASP 950.0192
GLY 960.0193
ALA 970.0190
TYR 980.0185
GLN 990.0196
SER 1000.0205
LEU 1010.0189
SER 1020.0186
HIS 1030.0181
LEU 1040.0168
SER 1050.0150
THR 1060.0141
LEU 1070.0142
ILE 1080.0131
LEU 1090.0131
THR 1100.0116
GLY 1110.0115
ASN 1120.0131
PRO 1130.0135
ILE 1140.0143
GLN 1150.0155
SER 1160.0166
LEU 1170.0161
ALA 1180.0175
LEU 1190.0171
GLY 1200.0174
ALA 1210.0170
PHE 1220.0161
SER 1230.0174
GLY 1240.0181
LEU 1250.0165
SER 1260.0164
SER 1270.0156
LEU 1280.0143
GLN 1290.0127
LYS 1300.0120
LEU 1310.0120
VAL 1320.0112
ALA 1330.0111
VAL 1340.0097
GLU 1350.0099
THR 1360.0115
ASN 1370.0115
LEU 1380.0113
ALA 1390.0110
SER 1400.0110
LEU 1410.0105
GLU 1420.0117
ASN 1430.0134
PHE 1440.0128
PRO 1450.0141
ILE 1460.0132
GLY 1470.0129
HIS 1480.0141
LEU 1490.0135
LYS 1500.0127
THR 1510.0128
LEU 1520.0117
LYS 1530.0105
GLU 1540.0096
LEU 1550.0096
ASN 1560.0090
VAL 1570.0089
ALA 1580.0075
HIS 1590.0076
ASN 1600.0088
LEU 1610.0092
ILE 1620.0089
GLN 1630.0085
SER 1640.0084
PHE 1650.0072
LYS 1660.0083
LEU 1670.0085
PRO 1680.0102
GLU 1690.0107
TYR 1700.0115
PHE 1710.0099
SER 1720.0100
ASN 1730.0115
LEU 1740.0106
THR 1750.0099
ASN 1760.0100
LEU 1770.0090
GLU 1780.0078
HIS 1790.0075
LEU 1800.0071
ASP 1810.0067
LEU 1820.0064
SER 1830.0053
SER 1840.0056
ASN 1850.0066
LYS 1860.0070
ILE 1870.0065
GLN 1880.0063
SER 1890.0063
ILE 1900.0061
TYR 1910.0071
CYS 1920.0069
THR 1930.0080
ASP 1940.0075
LEU 1950.0065
ARG 1960.0074
VAL 1970.0079
LEU 1980.0064
HIS 1990.0060
GLN 2000.0072
MET 2010.0069
PRO 2020.0057
LEU 2030.0063
LEU 2040.0063
ASN 2050.0061
LEU 2060.0057
SER 2070.0052
LEU 2080.0047
ASP 2090.0043
LEU 2100.0040
SER 2110.0032
LEU 2120.0035
ASN 2130.0044
PRO 2140.0046
MET 2150.0044
ASN 2160.0050
PHE 2170.0055
ILE 2180.0050
GLN 2190.0061
PRO 2200.0056
GLY 2210.0050
ALA 2220.0051
PHE 2230.0035
LYS 2240.0034
GLU 2250.0028
ILE 2260.0032
ARG 2270.0029
LEU 2280.0033
HIS 2290.0039
LYS 2300.0035
LEU 2310.0026
THR 2320.0024
LEU 2330.0015
ARG 2340.0012
ASN 2350.0014
ASN 2360.0023
PHE 2370.0025
ASP 2380.0031
SER 2390.0033
LEU 2400.0033
ASN 2410.0043
VAL 2420.0039
MET 2430.0027
LYS 2440.0034
THR 2450.0042
CYS 2460.0034
ILE 2470.0023
GLN 2480.0035
GLY 2490.0038
LEU 2500.0025
ALA 2510.0025
GLY 2520.0020
LEU 2530.0013
GLU 2540.0010
VAL 2550.0018
HIS 2560.0030
ARG 2570.0030
LEU 2580.0018
VAL 2590.0019
LEU 2600.0011
GLY 2610.0012
GLU 2620.0009
PHE 2630.0016
ARG 2640.0020
ASN 2650.0017
GLU 2660.0011
GLY 2670.0009
ASN 2680.0009
LEU 2690.0019
GLU 2700.0029
LYS 2710.0034
PHE 2720.0032
ASP 2730.0041
LYS 2740.0043
SER 2750.0043
ALA 2760.0030
LEU 2770.0026
GLU 2780.0034
GLY 2790.0027
LEU 2800.0019
CYS 2810.0029
ASN 2820.0023
LEU 2830.0012
THR 2840.0013
ILE 2850.0020
GLU 2860.0032
GLU 2870.0036
PHE 2880.0031
ARG 2890.0031
LEU 2900.0027
ALA 2910.0027
TYR 2920.0027
LEU 2930.0025
ASP 2940.0026
TYR 2950.0032
TYR 2960.0041
LEU 2970.0042
ASP 2980.0050
ASP 2990.0050
ILE 3000.0047
ILE 3010.0050
ASP 3020.0046
LEU 3030.0042
PHE 3040.0040
ASN 3050.0044
CYS 3060.0035
LEU 3070.0036
THR 3080.0045
ASN 3090.0044
VAL 3100.0041
SER 3110.0048
SER 3120.0048
PHE 3130.0046
SER 3140.0044
LEU 3150.0044
VAL 3160.0043
SER 3170.0042
VAL 3180.0042
THR 3190.0044
ILE 3200.0049
GLU 3210.0055
ARG 3220.0055
VAL 3230.0052
LYS 3240.0058
ASP 3250.0056
PHE 3260.0054
SER 3270.0057
TYR 3280.0055
ASN 3290.0057
PHE 3300.0053
GLY 3310.0056
TRP 3320.0054
GLN 3330.0057
HIS 3340.0055
LEU 3350.0056
GLU 3360.0055
LEU 3370.0055
VAL 3380.0054
ASN 3390.0051
CYS 3400.0051
LYS 3410.0053
PHE 3420.0056
GLY 3430.0056
GLN 3440.0057
PHE 3450.0056
PRO 3460.0054
THR 3470.0056
LEU 3480.0057
LYS 3490.0059
LEU 3500.0059
LYS 3510.0063
SER 3520.0063
LEU 3530.0060
LYS 3540.0061
ARG 3550.0060
LEU 3560.0059
THR 3570.0059
PHE 3580.0058
THR 3590.0058
SER 3600.0057
ASN 3610.0056
LYS 3620.0055
GLY 3630.0057
GLY 3640.0053
ASN 3650.0048
ALA 3660.0046
PHE 3670.0047
SER 3680.0048
GLU 3690.0049
VAL 3700.0053
ASP 3710.0057
LEU 3720.0059
PRO 3730.0062
SER 3740.0063
LEU 3750.0061
GLU 3760.0060
PHE 3770.0060
LEU 3780.0057
ASP 3790.0059
LEU 3800.0055
SER 3810.0055
ARG 3820.0056
ASN 3830.0055
GLY 3840.0050
LEU 3850.0046
SER 3860.0040
PHE 3870.0034
LYS 3880.0028
GLY 3890.0026
CYS 3900.0027
CYS 3910.0031
SER 3920.0035
GLN 3930.0041
SER 3940.0043
ASP 3950.0045
PHE 3960.0050
GLY 3970.0054
THR 3980.0055
THR 3990.0052
SER 4000.0057
LEU 4010.0054
LYS 4020.0056
TYR 4030.0057
LEU 4040.0052
ASP 4050.0055
LEU 4060.0049
SER 4070.0055
PHE 4080.0057
ASN 4090.0048
GLY 4100.0041
VAL 4110.0033
ILE 4120.0030
THR 4130.0025
MET 4140.0025
SER 4150.0029
SER 4160.0027
ASN 4170.0026
PHE 4180.0028
LEU 4190.0033
GLY 4200.0039
LEU 4210.0039
GLU 4220.0038
GLN 4230.0047
LEU 4240.0048
GLU 4250.0056
HIS 4260.0060
LEU 4270.0053
ASP 4280.0058
PHE 4290.0050
GLN 4300.0061
HIS 4310.0061
SER 4320.0048
ASN 4330.0041
LEU 4340.0036
LYS 4350.0034
GLN 4360.0039
MET 4370.0045
SER 4380.0057
GLU 4390.0054
PHE 4400.0050
SER 4410.0043
VAL 4420.0033
PHE 4430.0034
LEU 4440.0032
SER 4450.0027
LEU 4460.0035
ARG 4470.0036
ASN 4480.0047
LEU 4490.0051
ILE 4500.0065
TYR 4510.0070
LEU 4520.0062
ASP 4530.0068
ILE 4540.0060
SER 4550.0074
HIS 4560.0071
THR 4570.0055
HIS 4580.0057
THR 4590.0060
ARG 4600.0073
VAL 4610.0076
ALA 4620.0083
PHE 4630.0079
ASN 4640.0085
GLY 4650.0068
ILE 4660.0060
PHE 4670.0056
ASN 4680.0050
GLY 4690.0040
LEU 4700.0048
SER 4710.0052
SER 4720.0059
LEU 4730.0065
GLU 4740.0083
VAL 4750.0087
LEU 4760.0080
LYS 4770.0086
MET 4780.0081
ALA 4790.0095
GLY 4800.0093
ASN 4810.0083
SER 4820.0092
PHE 4830.0099
GLN 4840.0106
GLU 4850.0127
ASN 4860.0126
PHE 4870.0132
LEU 4880.0121
PRO 4890.0114
ASP 4900.0108
ILE 4910.0087
PHE 4920.0088
THR 4930.0089
GLU 4940.0071
LEU 4950.0073
ARG 4960.0081
ASN 4970.0085
LEU 4980.0090
THR 4990.0109
PHE 5000.0111
LEU 5010.0106
ASP 5020.0111
LEU 5030.0111
SER 5040.0122
GLN 5050.0119
CYS 5060.0109
GLN 5070.0125
LEU 5080.0133
GLU 5090.0153
GLN 5100.0157
LEU 5110.0150
SER 5120.0145
PRO 5130.0156
THR 5140.0140
ALA 5150.0124
PHE 5160.0123
ASN 5170.0129
SER 5180.0109
LEU 5190.0110
SER 5200.0119
SER 5210.0116
LEU 5220.0121
GLN 5230.0139
VAL 5240.0141
LEU 5250.0136
ASN 5260.0138
MET 5270.0142
SER 5280.0152
HIS 5290.0151
ASN 5300.0145
ASN 5310.0158
PHE 5320.0173
PHE 5330.0197
SER 5340.0206
LEU 5350.0200
ASP 5360.0198
THR 5370.0194
PHE 5380.0186
PRO 5390.0162
TYR 5400.0163
LYS 5410.0171
CYS 5420.0152
LEU 5430.0146
ASN 5440.0150
SER 5450.0147
LEU 5460.0154
GLN 5470.0170
VAL 5480.0169
LEU 5490.0168
ASP 5500.0170
TYR 5510.0175
SER 5520.0184
LEU 5530.0180
ASN 5540.0179
HIS 5550.0195
ILE 5560.0207
MET 5570.0232
THR 5580.0236
SER 5590.0231
LYS 5600.0230
LYS 5610.0234
GLN 5620.0248
GLU 5630.0232
LEU 5640.0230
GLN 5650.0227
HIS 5660.0203
PHE 5670.0195
PRO 5680.0182
SER 5690.0193
SER 5700.0185
LEU 5710.0188
ALA 5720.0203
PHE 5730.0202
LEU 5740.0200
ASN 5750.0200
LEU 5760.0208
THR 5770.0216
GLN 5780.0215
ASN 5790.0214
ASP 5800.0227
PHE 5810.0245
ALA 5820.0264
CYS 5830.0286
THR 5840.0303
CYS 5850.0316
GLU 5860.0301
HIS 5870.0284
GLN 5880.0299
SER 5890.0287
PHE 5900.0264
LEU 5910.0274
GLN 5920.0286
TRP 5930.0265
ILE 5940.0258
LYS 5950.0280
ASP 5960.0278
GLN 5970.0258
ARG 5980.0261
GLN 5990.0255
LEU 6000.0230
LEU 6010.0232
VAL 6020.0232
GLU 6030.0242
VAL 6040.0259
GLU 6050.0267
ARG 6060.0245
MET 6070.0246
GLU 6080.0260
CYS 6090.0266
ALA 6100.0256
THR 6110.0270
PRO 6120.0294
SER 6130.0292
ASP 6140.0313
LYS 6150.0307
GLN 6160.0284
GLY 6170.0280
MET 6180.0296
PRO 6190.0285
VAL 6200.0280
LEU 6210.0289
SER 6220.0311
LEU 6230.0320
ASN 6240.0342
ILE 6250.0335
THR 6260.0355
CYS 6270.0355
GLN 190.0140
LYS 200.0124
GLN 210.0109
TYR 220.0093
TRP 230.0076
VAL 240.0061
CYS 250.0048
ASN 260.0044
SER 270.0036
SER 280.0044
ASP 290.0061
ALA 300.0063
SER 310.0065
ILE 320.0070
SER 330.0083
TYR 340.0097
THR 350.0114
TYR 360.0124
CYS 370.0137
ASP 380.0143
LYS 390.0156
MET 400.0146
GLN 410.0133
TYR 420.0122
PRO 430.0109
ILE 440.0090
SER 450.0075
ILE 460.0061
ASN 470.0044
VAL 480.0031
ASN 490.0013
PRO 500.0012
CYS 510.0029
ILE 520.0045
GLU 530.0054
LEU 540.0073
LYS 550.0077
GLY 560.0069
SER 570.0051
LYS 580.0039
GLY 590.0020
LEU 600.0013
LEU 610.0030
HIS 620.0037
ILE 630.0055
PHE 640.0069
TYR 650.0084
ILE 660.0097
PRO 670.0102
ARG 680.0119
ARG 690.0114
ASP 700.0100
LEU 710.0084
LYS 720.0084
GLN 730.0086
LEU 740.0087
TYR 750.0095
PHE 760.0101
ASN 770.0119
LEU 780.0117
TYR 790.0130
ILE 800.0125
THR 810.0133
VAL 820.0132
ASN 830.0138
THR 840.0154
MET 850.0156
ASN 860.0155
LEU 870.0147
PRO 880.0151
LYS 890.0141
ARG 900.0124
LYS 910.0116
GLU 920.0097
VAL 930.0087
ILE 940.0070
CYS 950.0063
ARG 960.0069
GLY 970.0063
SER 980.0048
ASP 990.0039
ASP 1000.0043
ASP 1010.0034
TYR 1020.0034
SER 1030.0038
PHE 1040.0052
CYS 1050.0060
ARG 1060.0062
ALA 1070.0075
LEU 1080.0093
LYS 1090.0109
GLY 1100.0111
GLU 1110.0093
THR 1120.0086
VAL 1130.0070
ASN 1140.0060
THR 1150.0041
THR 1160.0026
ILE 1170.0025
SER 1180.0021
PHE 1190.0038
SER 1200.0051
PHE 1210.0070
LYS 1220.0084
GLY 1230.0103
ILE 1240.0108
LYS 1250.0111
PHE 1260.0110
SER 1270.0119
LYS 1280.0109
GLY 1290.0112
LYS 1300.0112
TYR 1310.0110
LYS 1320.0115
CYS 1330.0111
VAL 1340.0119
VAL 1350.0108
GLU 1360.0118
ALA 1370.0107
ILE 1380.0113
SER 1390.0106
GLY 1400.0110
SER 1410.0115
PRO 1420.0134
GLU 1430.0127
GLU 1440.0135
MET 1450.0130
LEU 1460.0116
PHE 1470.0117
CYS 1480.0120
LEU 1490.0111
GLU 1500.0114
PHE 1510.0099
VAL 1520.0099
ILE 1530.0087
LEU 1540.0087
HIS 1550.0085
GLN 1560.0082
PRO 1570.0086
ASN 1580.0086

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.