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***  TLR4-MD2  ***

<R2> analysis for 2404080903442958768

---  normal mode 8  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0323
GLU 270.0148
PRO 280.0150
CYS 290.0142
VAL 300.0155
GLU 310.0164
VAL 320.0166
VAL 330.0174
PRO 340.0182
ASN 350.0173
ILE 360.0161
THR 370.0146
TYR 380.0137
GLN 390.0127
CYS 400.0119
MET 410.0111
GLU 420.0111
LEU 430.0120
ASN 440.0107
PHE 450.0093
TYR 460.0075
LYS 470.0070
ILE 480.0078
PRO 490.0101
ASP 500.0111
ASN 510.0132
LEU 520.0137
PRO 530.0150
PHE 540.0144
SER 550.0156
THR 560.0140
LYS 570.0134
ASN 580.0122
LEU 590.0108
ASP 600.0099
LEU 610.0087
SER 620.0081
PHE 630.0085
ASN 640.0082
PRO 650.0070
LEU 660.0053
ARG 670.0038
HIS 680.0020
LEU 690.0024
GLY 700.0028
SER 710.0048
TYR 720.0066
SER 730.0058
PHE 740.0078
PHE 750.0096
SER 760.0109
PHE 770.0115
PRO 780.0123
GLU 790.0135
LEU 800.0118
GLN 810.0116
VAL 820.0101
LEU 830.0083
ASP 840.0074
LEU 850.0057
SER 860.0056
ARG 870.0056
CYS 880.0054
GLU 890.0048
ILE 900.0026
GLN 910.0024
THR 920.0011
ILE 930.0018
GLU 940.0033
ASP 950.0055
GLY 960.0065
ALA 970.0052
TYR 980.0071
GLN 990.0086
SER 1000.0101
LEU 1010.0102
SER 1020.0119
HIS 1030.0125
LEU 1040.0104
SER 1050.0101
THR 1060.0083
LEU 1070.0065
ILE 1080.0052
LEU 1090.0033
THR 1100.0033
GLY 1110.0035
ASN 1120.0027
PRO 1130.0033
ILE 1140.0021
GLN 1150.0038
SER 1160.0035
LEU 1170.0035
ALA 1180.0049
LEU 1190.0070
GLY 1200.0071
ALA 1210.0053
PHE 1220.0065
SER 1230.0084
GLY 1240.0097
LEU 1250.0095
SER 1260.0115
SER 1270.0114
LEU 1280.0094
GLN 1290.0094
LYS 1300.0074
LEU 1310.0056
VAL 1320.0040
ALA 1330.0020
VAL 1340.0012
GLU 1350.0018
THR 1360.0012
ASN 1370.0031
LEU 1380.0032
ALA 1390.0050
SER 1400.0059
LEU 1410.0059
GLU 1420.0078
ASN 1430.0072
PHE 1440.0058
PRO 1450.0068
ILE 1460.0073
GLY 1470.0093
HIS 1480.0103
LEU 1490.0097
LYS 1500.0113
THR 1510.0111
LEU 1520.0091
LYS 1530.0090
GLU 1540.0069
LEU 1550.0053
ASN 1560.0034
VAL 1570.0022
ALA 1580.0007
HIS 1590.0017
ASN 1600.0026
LEU 1610.0046
ILE 1620.0051
GLN 1630.0064
SER 1640.0073
PHE 1650.0069
LYS 1660.0086
LEU 1670.0083
PRO 1680.0091
GLU 1690.0109
TYR 1700.0103
PHE 1710.0098
SER 1720.0117
ASN 1730.0117
LEU 1740.0102
THR 1750.0116
ASN 1760.0109
LEU 1770.0089
GLU 1780.0083
HIS 1790.0063
LEU 1800.0051
ASP 1810.0031
LEU 1820.0029
SER 1830.0016
SER 1840.0021
ASN 1850.0034
LYS 1860.0052
ILE 1870.0057
GLN 1880.0068
SER 1890.0077
ILE 1900.0080
TYR 1910.0099
CYS 1920.0108
THR 1930.0112
ASP 1940.0095
LEU 1950.0097
ARG 1960.0114
VAL 1970.0109
LEU 1980.0105
HIS 1990.0122
GLN 2000.0129
MET 2010.0122
PRO 2020.0129
LEU 2030.0123
LEU 2040.0105
ASN 2050.0095
LEU 2060.0079
SER 2070.0061
LEU 2080.0049
ASP 2090.0031
LEU 2100.0031
SER 2110.0018
LEU 2120.0025
ASN 2130.0038
PRO 2140.0052
MET 2150.0056
ASN 2160.0070
PHE 2170.0079
ILE 2180.0079
GLN 2190.0096
PRO 2200.0100
GLY 2210.0105
ALA 2220.0098
PHE 2230.0090
LYS 2240.0104
GLU 2250.0108
ILE 2260.0095
ARG 2270.0090
LEU 2280.0076
HIS 2290.0073
LYS 2300.0057
LEU 2310.0045
THR 2320.0030
LEU 2330.0028
ARG 2340.0015
ASN 2350.0025
ASN 2360.0036
PHE 2370.0045
ASP 2380.0054
SER 2390.0055
LEU 2400.0048
ASN 2410.0061
VAL 2420.0061
MET 2430.0049
LYS 2440.0055
THR 2450.0068
CYS 2460.0063
ILE 2470.0057
GLN 2480.0072
GLY 2490.0079
LEU 2500.0070
ALA 2510.0080
GLY 2520.0089
LEU 2530.0080
GLU 2540.0080
VAL 2550.0067
HIS 2560.0068
ARG 2570.0054
LEU 2580.0044
VAL 2590.0030
LEU 2600.0022
GLY 2610.0010
GLU 2620.0014
PHE 2630.0023
ARG 2640.0037
ASN 2650.0050
GLU 2660.0047
GLY 2670.0046
ASN 2680.0038
LEU 2690.0039
GLU 2700.0045
LYS 2710.0034
PHE 2720.0024
ASP 2730.0024
LYS 2740.0024
SER 2750.0038
ALA 2760.0033
LEU 2770.0034
GLU 2780.0046
GLY 2790.0056
LEU 2800.0051
CYS 2810.0059
ASN 2820.0072
LEU 2830.0067
THR 2840.0071
ILE 2850.0061
GLU 2860.0064
GLU 2870.0053
PHE 2880.0040
ARG 2890.0029
LEU 2900.0018
ALA 2910.0013
TYR 2920.0011
LEU 2930.0012
ASP 2940.0026
TYR 2950.0021
TYR 2960.0018
LEU 2970.0009
ASP 2980.0008
ASP 2990.0012
ILE 3000.0018
ILE 3010.0024
ASP 3020.0022
LEU 3030.0019
PHE 3040.0026
ASN 3050.0033
CYS 3060.0039
LEU 3070.0038
THR 3080.0040
ASN 3090.0049
VAL 3100.0048
SER 3110.0052
SER 3120.0045
PHE 3130.0036
SER 3140.0030
LEU 3150.0024
VAL 3160.0023
SER 3170.0021
VAL 3180.0016
THR 3190.0021
ILE 3200.0023
GLU 3210.0028
ARG 3220.0022
VAL 3230.0026
LYS 3240.0032
ASP 3250.0033
PHE 3260.0034
SER 3270.0037
TYR 3280.0034
ASN 3290.0039
PHE 3300.0038
GLY 3310.0044
TRP 3320.0042
GLN 3330.0047
HIS 3340.0043
LEU 3350.0037
GLU 3360.0032
LEU 3370.0029
VAL 3380.0027
ASN 3390.0028
CYS 3400.0026
LYS 3410.0029
PHE 3420.0033
GLY 3430.0045
GLN 3440.0048
PHE 3450.0047
PRO 3460.0043
THR 3470.0047
LEU 3480.0044
LYS 3490.0049
LEU 3500.0045
LYS 3510.0051
SER 3520.0050
LEU 3530.0045
LYS 3540.0048
ARG 3550.0042
LEU 3560.0038
THR 3570.0032
PHE 3580.0033
THR 3590.0030
SER 3600.0030
ASN 3610.0031
LYS 3620.0034
GLY 3630.0041
GLY 3640.0052
ASN 3650.0057
ALA 3660.0061
PHE 3670.0057
SER 3680.0064
GLU 3690.0064
VAL 3700.0058
ASP 3710.0058
LEU 3720.0054
PRO 3730.0061
SER 3740.0057
LEU 3750.0052
GLU 3760.0051
PHE 3770.0041
LEU 3780.0037
ASP 3790.0029
LEU 3800.0034
SER 3810.0031
ARG 3820.0035
ASN 3830.0042
GLY 3840.0051
LEU 3850.0054
SER 3860.0061
PHE 3870.0065
LYS 3880.0078
GLY 3890.0075
CYS 3900.0062
CYS 3910.0061
SER 3920.0071
GLN 3930.0073
SER 3940.0079
ASP 3950.0066
PHE 3960.0059
GLY 3970.0069
THR 3980.0067
THR 3990.0073
SER 4000.0067
LEU 4010.0055
LYS 4020.0053
TYR 4030.0040
LEU 4040.0035
ASP 4050.0028
LEU 4060.0033
SER 4070.0030
PHE 4080.0042
ASN 4090.0050
GLY 4100.0062
VAL 4110.0068
ILE 4120.0059
THR 4130.0068
MET 4140.0062
SER 4150.0076
SER 4160.0075
ASN 4170.0066
PHE 4180.0066
LEU 4190.0081
GLY 4200.0083
LEU 4210.0068
GLU 4220.0075
GLN 4230.0070
LEU 4240.0055
GLU 4250.0055
HIS 4260.0041
LEU 4270.0031
ASP 4280.0025
PHE 4290.0029
GLN 4300.0035
HIS 4310.0051
SER 4320.0052
ASN 4330.0062
LEU 4340.0053
LYS 4350.0063
GLN 4360.0064
MET 4370.0048
SER 4380.0049
GLU 4390.0064
PHE 4400.0064
SER 4410.0056
VAL 4420.0053
PHE 4430.0050
LEU 4440.0065
SER 4450.0073
LEU 4460.0063
ARG 4470.0076
ASN 4480.0075
LEU 4490.0058
ILE 4500.0062
TYR 4510.0048
LEU 4520.0034
ASP 4530.0032
ILE 4540.0031
SER 4550.0047
HIS 4560.0061
THR 4570.0053
HIS 4580.0064
THR 4590.0053
ARG 4600.0058
VAL 4610.0039
ALA 4620.0044
PHE 4630.0038
ASN 4640.0032
GLY 4650.0044
ILE 4660.0035
PHE 4670.0039
ASN 4680.0056
GLY 4690.0068
LEU 4700.0060
SER 4710.0079
SER 4720.0083
LEU 4730.0066
GLU 4740.0075
VAL 4750.0063
LEU 4760.0048
LYS 4770.0050
MET 4780.0045
ALA 4790.0065
GLY 4800.0077
ASN 4810.0066
SER 4820.0067
PHE 4830.0057
GLN 4840.0059
GLU 4850.0070
ASN 4860.0074
PHE 4870.0059
LEU 4880.0051
PRO 4890.0035
ASP 4900.0044
ILE 4910.0038
PHE 4920.0055
THR 4930.0069
GLU 4940.0075
LEU 4950.0073
ARG 4960.0096
ASN 4970.0101
LEU 4980.0085
THR 4990.0098
PHE 5000.0087
LEU 5010.0074
ASP 5020.0076
LEU 5030.0073
SER 5040.0092
GLN 5050.0099
CYS 5060.0082
GLN 5070.0100
LEU 5080.0088
GLU 5090.0099
GLN 5100.0084
LEU 5110.0075
SER 5120.0063
PRO 5130.0082
THR 5140.0077
ALA 5150.0068
PHE 5160.0086
ASN 5170.0099
SER 5180.0101
LEU 5190.0101
SER 5200.0126
SER 5210.0125
LEU 5220.0112
GLN 5230.0127
VAL 5240.0118
LEU 5250.0106
ASN 5260.0106
MET 5270.0107
SER 5280.0124
HIS 5290.0132
ASN 5300.0118
ASN 5310.0127
PHE 5320.0128
PHE 5330.0148
SER 5340.0145
LEU 5350.0147
ASP 5360.0138
THR 5370.0144
PHE 5380.0130
PRO 5390.0110
TYR 5400.0127
LYS 5410.0142
CYS 5420.0138
LEU 5430.0134
ASN 5440.0156
SER 5450.0153
LEU 5460.0143
GLN 5470.0158
VAL 5480.0148
LEU 5490.0140
ASP 5500.0141
TYR 5510.0143
SER 5520.0159
LEU 5530.0162
ASN 5540.0152
HIS 5550.0166
ILE 5560.0167
MET 5570.0187
THR 5580.0176
SER 5590.0164
LYS 5600.0146
LYS 5610.0152
GLN 5620.0177
GLU 5630.0171
LEU 5640.0181
GLN 5650.0191
HIS 5660.0170
PHE 5670.0170
PRO 5680.0171
SER 5690.0194
SER 5700.0187
LEU 5710.0178
ALA 5720.0192
PHE 5730.0182
LEU 5740.0174
ASN 5750.0175
LEU 5760.0180
THR 5770.0193
GLN 5780.0198
ASN 5790.0192
ASP 5800.0204
PHE 5810.0212
ALA 5820.0224
CYS 5830.0251
THR 5840.0258
CYS 5850.0260
GLU 5860.0236
HIS 5870.0224
GLN 5880.0244
SER 5890.0226
PHE 5900.0211
LEU 5910.0230
GLN 5920.0244
TRP 5930.0225
ILE 5940.0224
LYS 5950.0251
ASP 5960.0250
GLN 5970.0236
ARG 5980.0241
GLN 5990.0239
LEU 6000.0212
LEU 6010.0209
VAL 6020.0210
GLU 6030.0222
VAL 6040.0239
GLU 6050.0252
ARG 6060.0230
MET 6070.0227
GLU 6080.0245
CYS 6090.0247
ALA 6100.0240
THR 6110.0246
PRO 6120.0274
SER 6130.0287
ASP 6140.0309
LYS 6150.0296
GLN 6160.0276
GLY 6170.0274
MET 6180.0283
PRO 6190.0267
VAL 6200.0255
LEU 6210.0264
SER 6220.0289
LEU 6230.0293
ASN 6240.0311
ILE 6250.0294
THR 6260.0311
CYS 6270.0298
GLN 190.0246
LYS 200.0242
GLN 210.0246
TYR 220.0227
TRP 230.0238
VAL 240.0219
CYS 250.0239
ASN 260.0263
SER 270.0265
SER 280.0289
ASP 290.0281
ALA 300.0272
SER 310.0269
ILE 320.0244
SER 330.0239
TYR 340.0225
THR 350.0226
TYR 360.0211
CYS 370.0222
ASP 380.0205
LYS 390.0203
MET 400.0175
GLN 410.0175
TYR 420.0148
PRO 430.0152
ILE 440.0147
SER 450.0152
ILE 460.0164
ASN 470.0175
VAL 480.0184
ASN 490.0191
PRO 500.0210
CYS 510.0222
ILE 520.0219
GLU 530.0240
LEU 540.0245
LYS 550.0253
GLY 560.0221
SER 570.0204
LYS 580.0175
GLY 590.0164
LEU 600.0145
LEU 610.0142
HIS 620.0133
ILE 630.0122
PHE 640.0112
TYR 650.0105
ILE 660.0088
PRO 670.0094
ARG 680.0102
ARG 690.0100
ASP 700.0083
LEU 710.0080
LYS 720.0079
GLN 730.0093
LEU 740.0102
TYR 750.0128
PHE 760.0154
ASN 770.0184
LEU 780.0201
TYR 790.0234
ILE 800.0246
THR 810.0275
VAL 820.0292
ASN 830.0318
THR 840.0323
MET 850.0312
ASN 860.0290
LEU 870.0267
PRO 880.0253
LYS 890.0229
ARG 900.0199
LYS 910.0169
GLU 920.0140
VAL 930.0112
ILE 940.0086
CYS 950.0065
ARG 960.0070
GLY 970.0068
SER 980.0054
ASP 990.0032
ASP 1000.0036
ASP 1010.0034
TYR 1020.0042
SER 1030.0033
PHE 1040.0048
CYS 1050.0051
ARG 1060.0036
ALA 1070.0046
LEU 1080.0053
LYS 1090.0070
GLY 1100.0060
GLU 1110.0046
THR 1120.0061
VAL 1130.0071
ASN 1140.0087
THR 1150.0082
THR 1160.0098
ILE 1170.0094
SER 1180.0104
PHE 1190.0133
SER 1200.0154
PHE 1210.0176
LYS 1220.0203
GLY 1230.0221
ILE 1240.0241
LYS 1250.0270
PHE 1260.0279
SER 1270.0306
LYS 1280.0318
GLY 1290.0317
LYS 1300.0300
TYR 1310.0274
LYS 1320.0261
CYS 1330.0234
VAL 1340.0223
VAL 1350.0191
GLU 1360.0184
ALA 1370.0153
ILE 1380.0145
SER 1390.0120
GLY 1400.0115
SER 1410.0127
PRO 1420.0154
GLU 1430.0148
GLU 1440.0160
MET 1450.0162
LEU 1460.0140
PHE 1470.0160
CYS 1480.0187
LEU 1490.0198
GLU 1500.0226
PHE 1510.0229
VAL 1520.0256
ILE 1530.0259
LEU 1540.0286
HIS 1550.0291
GLN 1560.0313
PRO 1570.0310
ASN 1580.0322

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.