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***  TLR4-MD2  ***

<R2> analysis for 2404080903442958768

---  normal mode 9  ---

This page gives a visualization of the normalized mean square displacement <R2> of all C-alpha atoms in the protein that are associated to this mode (black bars). The three components of the corresponding eigenvector are shown on the left (colored bars). Here is the raw data for <R2> and for the eigenvector (shift-click on the links for download).

XYZresidue<R2><R2>max = 0.0363
GLU 270.0166
PRO 280.0148
CYS 290.0138
VAL 300.0132
GLU 310.0148
VAL 320.0138
VAL 330.0156
PRO 340.0175
ASN 350.0182
ILE 360.0165
THR 370.0143
TYR 380.0136
GLN 390.0114
CYS 400.0117
MET 410.0095
GLU 420.0093
LEU 430.0116
ASN 440.0124
PHE 450.0134
TYR 460.0142
LYS 470.0150
ILE 480.0146
PRO 490.0158
ASP 500.0177
ASN 510.0184
LEU 520.0175
PRO 530.0186
PHE 540.0188
SER 550.0184
THR 560.0163
LYS 570.0150
ASN 580.0131
LEU 590.0123
ASP 600.0104
LEU 610.0105
SER 620.0085
PHE 630.0081
ASN 640.0103
PRO 650.0112
LEU 660.0120
ARG 670.0114
HIS 680.0123
LEU 690.0121
GLY 700.0136
SER 710.0144
TYR 720.0152
SER 730.0145
PHE 740.0147
PHE 750.0167
SER 760.0174
PHE 770.0163
PRO 780.0169
GLU 790.0166
LEU 800.0145
GLN 810.0133
VAL 820.0115
LEU 830.0107
ASP 840.0091
LEU 850.0088
SER 860.0070
ARG 870.0069
CYS 880.0089
GLU 890.0091
ILE 900.0096
GLN 910.0096
THR 920.0102
ILE 930.0103
GLU 940.0116
ASP 950.0120
GLY 960.0127
ALA 970.0126
TYR 980.0126
GLN 990.0138
SER 1000.0152
LEU 1010.0141
SER 1020.0145
HIS 1030.0144
LEU 1040.0126
SER 1050.0114
THR 1060.0098
LEU 1070.0089
ILE 1080.0075
LEU 1090.0070
THR 1100.0054
GLY 1110.0054
ASN 1120.0068
PRO 1130.0072
ILE 1140.0075
GLN 1150.0082
SER 1160.0088
LEU 1170.0083
ALA 1180.0095
LEU 1190.0087
GLY 1200.0099
ALA 1210.0099
PHE 1220.0097
SER 1230.0111
GLY 1240.0126
LEU 1250.0117
SER 1260.0124
SER 1270.0121
LEU 1280.0103
GLN 1290.0097
LYS 1300.0082
LEU 1310.0070
VAL 1320.0058
ALA 1330.0050
VAL 1340.0038
GLU 1350.0036
THR 1360.0048
ASN 1370.0046
LEU 1380.0037
ALA 1390.0027
SER 1400.0023
LEU 1410.0028
GLU 1420.0028
ASN 1430.0041
PHE 1440.0048
PRO 1450.0063
ILE 1460.0068
GLY 1470.0066
HIS 1480.0083
LEU 1490.0087
LYS 1500.0094
THR 1510.0099
LEU 1520.0083
LYS 1530.0084
GLU 1540.0067
LEU 1550.0054
ASN 1560.0043
VAL 1570.0033
ALA 1580.0024
HIS 1590.0021
ASN 1600.0023
LEU 1610.0024
ILE 1620.0018
GLN 1630.0030
SER 1640.0032
PHE 1650.0037
LYS 1660.0039
LEU 1670.0038
PRO 1680.0037
GLU 1690.0047
TYR 1700.0056
PHE 1710.0057
SER 1720.0069
ASN 1730.0076
LEU 1740.0074
THR 1750.0085
ASN 1760.0087
LEU 1770.0071
GLU 1780.0071
HIS 1790.0058
LEU 1800.0046
ASP 1810.0036
LEU 1820.0029
SER 1830.0029
SER 1840.0025
ASN 1850.0024
LYS 1860.0030
ILE 1870.0038
GLN 1880.0049
SER 1890.0055
ILE 1900.0057
TYR 1910.0062
CYS 1920.0069
THR 1930.0064
ASP 1940.0054
LEU 1950.0059
ARG 1960.0064
VAL 1970.0061
LEU 1980.0068
HIS 1990.0079
GLN 2000.0080
MET 2010.0082
PRO 2020.0095
LEU 2030.0093
LEU 2040.0079
ASN 2050.0076
LEU 2060.0062
SER 2070.0055
LEU 2080.0048
ASP 2090.0039
LEU 2100.0040
SER 2110.0038
LEU 2120.0036
ASN 2130.0039
PRO 2140.0046
MET 2150.0055
ASN 2160.0064
PHE 2170.0068
ILE 2180.0068
GLN 2190.0075
PRO 2200.0084
GLY 2210.0086
ALA 2220.0075
PHE 2230.0075
LYS 2240.0086
GLU 2250.0088
ILE 2260.0076
ARG 2270.0077
LEU 2280.0066
HIS 2290.0063
LYS 2300.0053
LEU 2310.0053
THR 2320.0048
LEU 2330.0050
ARG 2340.0046
ASN 2350.0047
ASN 2360.0052
PHE 2370.0057
ASP 2380.0061
SER 2390.0069
LEU 2400.0067
ASN 2410.0075
VAL 2420.0073
MET 2430.0066
LYS 2440.0071
THR 2450.0077
CYS 2460.0070
ILE 2470.0069
GLN 2480.0078
GLY 2490.0077
LEU 2500.0071
ALA 2510.0082
GLY 2520.0085
LEU 2530.0076
GLU 2540.0076
VAL 2550.0066
HIS 2560.0061
ARG 2570.0053
LEU 2580.0054
VAL 2590.0048
LEU 2600.0051
GLY 2610.0049
GLU 2620.0049
PHE 2630.0042
ARG 2640.0043
ASN 2650.0036
GLU 2660.0034
GLY 2670.0053
ASN 2680.0054
LEU 2690.0059
GLU 2700.0064
LYS 2710.0066
PHE 2720.0061
ASP 2730.0063
LYS 2740.0061
SER 2750.0071
ALA 2760.0067
LEU 2770.0063
GLU 2780.0071
GLY 2790.0076
LEU 2800.0069
CYS 2810.0076
ASN 2820.0082
LEU 2830.0077
THR 2840.0073
ILE 2850.0062
GLU 2860.0056
GLU 2870.0049
PHE 2880.0049
ARG 2890.0045
LEU 2900.0047
ALA 2910.0044
TYR 2920.0045
LEU 2930.0051
ASP 2940.0054
TYR 2950.0061
TYR 2960.0055
LEU 2970.0049
ASP 2980.0050
ASP 2990.0048
ILE 3000.0038
ILE 3010.0038
ASP 3020.0050
LEU 3030.0053
PHE 3040.0048
ASN 3050.0051
CYS 3060.0058
LEU 3070.0053
THR 3080.0047
ASN 3090.0053
VAL 3100.0051
SER 3110.0049
SER 3120.0043
PHE 3130.0039
SER 3140.0036
LEU 3150.0038
VAL 3160.0039
SER 3170.0044
VAL 3180.0047
THR 3190.0048
ILE 3200.0041
GLU 3210.0048
ARG 3220.0051
VAL 3230.0043
LYS 3240.0043
ASP 3250.0032
PHE 3260.0022
SER 3270.0020
TYR 3280.0014
ASN 3290.0011
PHE 3300.0026
GLY 3310.0035
TRP 3320.0036
GLN 3330.0042
HIS 3340.0038
LEU 3350.0024
GLU 3360.0023
LEU 3370.0024
VAL 3380.0029
ASN 3390.0039
CYS 3400.0042
LYS 3410.0053
PHE 3420.0048
GLY 3430.0064
GLN 3440.0061
PHE 3450.0049
PRO 3460.0037
THR 3470.0040
LEU 3480.0023
LYS 3490.0027
LEU 3500.0022
LYS 3510.0042
SER 3520.0051
LEU 3530.0043
LYS 3540.0059
ARG 3550.0049
LEU 3560.0028
THR 3570.0019
PHE 3580.0005
THR 3590.0017
SER 3600.0031
ASN 3610.0037
LYS 3620.0052
GLY 3630.0069
GLY 3640.0076
ASN 3650.0081
ALA 3660.0082
PHE 3670.0074
SER 3680.0084
GLU 3690.0082
VAL 3700.0063
ASP 3710.0062
LEU 3720.0057
PRO 3730.0078
SER 3740.0078
LEU 3750.0072
GLU 3760.0087
PHE 3770.0069
LEU 3780.0048
ASP 3790.0028
LEU 3800.0022
SER 3810.0018
ARG 3820.0035
ASN 3830.0048
GLY 3840.0071
LEU 3850.0072
SER 3860.0094
PHE 3870.0109
LYS 3880.0141
GLY 3890.0147
CYS 3900.0132
CYS 3910.0137
SER 3920.0144
GLN 3930.0134
SER 3940.0131
ASP 3950.0103
PHE 3960.0084
GLY 3970.0098
THR 3980.0106
THR 3990.0139
SER 4000.0132
LEU 4010.0108
LYS 4020.0117
TYR 4030.0089
LEU 4040.0069
ASP 4050.0043
LEU 4060.0045
SER 4070.0033
PHE 4080.0045
ASN 4090.0066
GLY 4100.0097
VAL 4110.0120
ILE 4120.0115
THR 4130.0147
MET 4140.0155
SER 4150.0184
SER 4160.0182
ASN 4170.0179
PHE 4180.0163
LEU 4190.0185
GLY 4200.0175
LEU 4210.0151
GLU 4220.0177
GLN 4230.0166
LEU 4240.0137
GLU 4250.0138
HIS 4260.0104
LEU 4270.0086
ASP 4280.0054
PHE 4290.0058
GLN 4300.0036
HIS 4310.0056
SER 4320.0077
ASN 4330.0109
LEU 4340.0119
LYS 4350.0157
GLN 4360.0183
MET 4370.0166
SER 4380.0195
GLU 4390.0219
PHE 4400.0223
SER 4410.0206
VAL 4420.0178
PHE 4430.0170
LEU 4440.0206
SER 4450.0203
LEU 4460.0179
ARG 4470.0210
ASN 4480.0193
LEU 4490.0157
ILE 4500.0152
TYR 4510.0113
LEU 4520.0092
ASP 4530.0057
ILE 4540.0065
SER 4550.0044
HIS 4560.0068
THR 4570.0087
HIS 4580.0119
THR 4590.0132
ARG 4600.0162
VAL 4610.0166
ALA 4620.0207
PHE 4630.0220
ASN 4640.0219
GLY 4650.0224
ILE 4660.0187
PHE 4670.0178
ASN 4680.0216
GLY 4690.0218
LEU 4700.0188
SER 4710.0220
SER 4720.0209
LEU 4730.0168
GLU 4740.0159
VAL 4750.0118
LEU 4760.0093
LYS 4770.0053
MET 4780.0060
ALA 4790.0039
GLY 4800.0072
ASN 4810.0100
SER 4820.0131
PHE 4830.0158
GLN 4840.0202
GLU 4850.0211
ASN 4860.0167
PHE 4870.0169
LEU 4880.0147
PRO 4890.0186
ASP 4900.0202
ILE 4910.0189
PHE 4920.0179
THR 4930.0221
GLU 4940.0230
LEU 4950.0199
ARG 4960.0224
ASN 4970.0216
LEU 4980.0172
THR 4990.0164
PHE 5000.0120
LEU 5010.0087
ASP 5020.0044
LEU 5030.0043
SER 5040.0036
GLN 5050.0077
CYS 5060.0092
GLN 5070.0125
LEU 5080.0115
GLU 5090.0134
GLN 5100.0146
LEU 5110.0138
SER 5120.0173
PRO 5130.0172
THR 5140.0202
ALA 5150.0172
PHE 5160.0160
ASN 5170.0202
SER 5180.0225
LEU 5190.0195
SER 5200.0224
SER 5210.0217
LEU 5220.0170
GLN 5230.0165
VAL 5240.0123
LEU 5250.0082
ASN 5260.0045
MET 5270.0022
SER 5280.0051
HIS 5290.0089
ASN 5300.0089
ASN 5310.0123
PHE 5320.0103
PHE 5330.0124
SER 5340.0095
LEU 5350.0046
ASP 5360.0067
THR 5370.0089
PHE 5380.0137
PRO 5390.0144
TYR 5400.0135
LYS 5410.0174
CYS 5420.0207
LEU 5430.0184
ASN 5440.0225
SER 5450.0217
LEU 5460.0169
GLN 5470.0175
VAL 5480.0136
LEU 5490.0089
ASP 5500.0072
TYR 5510.0047
SER 5520.0093
LEU 5530.0122
ASN 5540.0106
HIS 5550.0137
ILE 5560.0103
MET 5570.0117
THR 5580.0105
SER 5590.0075
LYS 5600.0118
LYS 5610.0106
GLN 5620.0072
GLU 5630.0105
LEU 5640.0073
GLN 5650.0121
HIS 5660.0142
PHE 5670.0136
PRO 5680.0180
SER 5690.0219
SER 5700.0223
LEU 5710.0177
ALA 5720.0195
PHE 5730.0166
LEU 5740.0118
ASN 5750.0118
LEU 5760.0099
THR 5770.0145
GLN 5780.0165
ASN 5790.0148
ASP 5800.0174
PHE 5810.0154
ALA 5820.0170
CYS 5830.0190
THR 5840.0200
CYS 5850.0168
GLU 5860.0164
HIS 5870.0118
GLN 5880.0101
SER 5890.0051
PHE 5900.0051
LEU 5910.0098
GLN 5920.0092
TRP 5930.0072
ILE 5940.0102
LYS 5950.0144
ASP 5960.0135
GLN 5970.0151
ARG 5980.0179
GLN 5990.0205
LEU 6000.0172
LEU 6010.0159
VAL 6020.0188
GLU 6030.0218
VAL 6040.0218
GLU 6050.0258
ARG 6060.0225
MET 6070.0190
GLU 6080.0226
CYS 6090.0218
ALA 6100.0235
THR 6110.0246
PRO 6120.0279
SER 6130.0330
ASP 6140.0345
LYS 6150.0301
GLN 6160.0287
GLY 6170.0287
MET 6180.0276
PRO 6190.0238
VAL 6200.0188
LEU 6210.0195
SER 6220.0232
LEU 6230.0221
ASN 6240.0229
ILE 6250.0177
THR 6260.0200
CYS 6270.0181
GLN 190.0108
LYS 200.0131
GLN 210.0147
TYR 220.0146
TRP 230.0174
VAL 240.0164
CYS 250.0198
ASN 260.0233
SER 270.0251
SER 280.0288
ASP 290.0279
ALA 300.0250
SER 310.0228
ILE 320.0192
SER 330.0168
TYR 340.0135
THR 350.0112
TYR 360.0081
CYS 370.0082
ASP 380.0052
LYS 390.0025
MET 400.0008
GLN 410.0036
TYR 420.0036
PRO 430.0059
ILE 440.0063
SER 450.0085
ILE 460.0098
ASN 470.0121
VAL 480.0139
ASN 490.0155
PRO 500.0181
CYS 510.0197
ILE 520.0200
GLU 530.0239
LEU 540.0252
LYS 550.0284
GLY 560.0249
SER 570.0213
LYS 580.0173
GLY 590.0134
LEU 600.0104
LEU 610.0094
HIS 620.0076
ILE 630.0056
PHE 640.0048
TYR 650.0030
ILE 660.0026
PRO 670.0014
ARG 680.0031
ARG 690.0043
ASP 700.0048
LEU 710.0041
LYS 720.0062
GLN 730.0076
LEU 740.0066
TYR 750.0092
PHE 760.0104
ASN 770.0131
LEU 780.0149
TYR 790.0171
ILE 800.0195
THR 810.0215
VAL 820.0247
ASN 830.0258
THR 840.0242
MET 850.0255
ASN 860.0235
LEU 870.0237
PRO 880.0228
LYS 890.0194
ARG 900.0180
LYS 910.0149
GLU 920.0124
VAL 930.0102
ILE 940.0068
CYS 950.0061
ARG 960.0067
GLY 970.0064
SER 980.0058
ASP 990.0048
ASP 1000.0048
ASP 1010.0046
TYR 1020.0041
SER 1030.0029
PHE 1040.0025
CYS 1050.0037
ARG 1060.0036
ALA 1070.0027
LEU 1080.0040
LYS 1090.0046
GLY 1100.0047
GLU 1110.0036
THR 1120.0032
VAL 1130.0017
ASN 1140.0033
THR 1150.0026
THR 1160.0044
ILE 1170.0055
SER 1180.0076
PHE 1190.0123
SER 1200.0167
PHE 1210.0208
LYS 1220.0254
GLY 1230.0296
ILE 1240.0298
LYS 1250.0319
PHE 1260.0300
SER 1270.0314
LYS 1280.0312
GLY 1290.0284
LYS 1300.0246
TYR 1310.0222
LYS 1320.0188
CYS 1330.0167
VAL 1340.0137
VAL 1350.0113
GLU 1360.0096
ALA 1370.0076
ILE 1380.0081
SER 1390.0071
GLY 1400.0080
SER 1410.0106
PRO 1420.0118
GLU 1430.0099
GLU 1440.0084
MET 1450.0067
LEU 1460.0042
PHE 1470.0044
CYS 1480.0073
LEU 1490.0092
GLU 1500.0124
PHE 1510.0149
VAL 1520.0181
ILE 1530.0208
LEU 1540.0243
HIS 1550.0271
GLN 1560.0309
PRO 1570.0330
ASN 1580.0363

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elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.