Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APX *

CA distance fluctuations for 240110225123556539

--- normal mode 8 ---

This matrix displays the maximum distance fluctuations between all pairs of CA atoms and between the two extreme conformations that were computed for this mode (DQMIN/DQMAX). Distance increases are plotted in blue and decreases in red for the strongest 10% of the residue pair distance changes. Every pixel corresponds to a single residue. Grey lines are drawn every 10 residues, yellow lines every 100 residues (counting from the upper left corner).

The following table indicates for every residue the two corresponding residues with the strongest CA distance fluctuations.

[HELP on distance fluctuations]

GD ok

largest increase ref largest decrease
ALA 16 0.10 MET 0 -0.30 LYS 177

ALA 16 0.11 GLN 1 -0.27 LYS 177

ALA 16 0.15 ILE 2 -0.27 LYS 177

ALA 16 0.17 PRO 3 -0.26 LYS 177

ALA 16 0.14 LEU 4 -0.25 LYS 177

ALA 16 0.14 CYS 5 -0.29 LYS 177

ALA 16 0.18 ALA 6 -0.32 LYS 177

ALA 16 0.17 ASN 7 -0.34 LYS 177

ALA 16 0.13 LEU 8 -0.34 LYS 177

ASP 117 0.21 VAL 9 -0.39 LYS 177

ASP 117 0.26 PRO 10 -0.44 LYS 177

ASP 117 0.24 VAL 11 -0.50 LYS 177

ASP 117 0.19 PRO 12 -0.55 LYS 177

GLN 69 0.13 ILE 13 -0.62 LYS 177

ALA 6 0.12 THR 14 -0.71 LYS 177

ALA 6 0.13 ASN 15 -0.84 LYS 177

ALA 6 0.18 ALA 16 -0.81 LYS 177

GLU 92 0.14 THR 17 -0.71 LYS 177

GLU 92 0.14 LEU 18 -0.79 LYS 177

GLY 93 0.15 ASP 19 -0.90 LYS 177

GLY 93 0.20 ARG 20 -0.70 LYS 177

GLY 93 0.23 ILE 21 -0.65 LYS 177

GLY 93 0.23 THR 22 -0.81 LYS 177

GLY 93 0.30 GLY 23 -0.69 LYS 177

GLY 93 0.43 LYS 24 -0.44 LYS 177

GLY 93 0.47 TRP 25 -0.35 LYS 177

GLY 93 0.59 PHE 26 -0.22 LYS 177

GLY 93 0.62 TYR 27 -0.21 LYS 177

GLY 93 0.54 ILE 28 -0.16 LYS 177

GLY 93 0.46 ALA 29 -0.16 LYS 177

GLY 93 0.36 SER 30 -0.20 LYS 177

GLY 93 0.22 ALA 31 -0.20 SER 76

ASP 159 0.12 PHE 32 -0.25 SER 76

PRO 10 0.12 ARG 33 -0.24 SER 76

ASN 85 0.15 ASN 34 -0.29 SER 76

ASN 70 0.14 GLU 35 -0.31 SER 76

GLN 69 0.19 GLU 36 -0.37 SER 76

GLN 69 0.20 TYR 37 -0.37 SER 76

GLY 93 0.21 ASN 38 -0.29 SER 76

ARG 95 0.32 LYS 39 -0.29 SER 76

ARG 95 0.52 SER 40 -0.33 ASN 75

GLY 93 0.60 VAL 41 -0.28 SER 76

GLY 93 0.61 GLN 42 -0.19 SER 76

GLY 93 0.90 GLU 43 -0.14 ASN 75

GLY 93 1.00 ILE 44 -0.11 GLU 43

GLY 93 0.95 GLN 45 -0.10 THR 133

GLY 93 0.92 ALA 46 -0.09 GLY 23

GLY 93 0.88 THR 47 -0.13 SER 40

GLY 93 0.70 PHE 48 -0.17 LYS 177

GLY 93 0.57 PHE 49 -0.27 LYS 177

GLY 93 0.38 TYR 50 -0.41 LYS 177

GLY 93 0.27 PHE 51 -0.60 LYS 177

GLY 93 0.17 THR 52 -0.81 LYS 177

GLY 93 0.11 PRO 53 -0.83 LYS 177

ARG 20 0.09 ASN 54 -0.91 LYS 177

PRO 3 0.07 LYS 55 -0.92 LYS 177

PRO 12 0.07 THR 56 -0.88 LYS 177

GLN 69 0.12 GLU 57 -0.74 LYS 177

GLN 69 0.15 ASP 58 -0.69 LYS 177

PHE 73 0.16 THR 59 -0.64 LYS 177

PHE 73 0.12 ILE 60 -0.63 LYS 177

GLY 94 0.13 PHE 61 -0.52 LYS 177

GLY 94 0.27 LEU 62 -0.35 LYS 177

GLY 93 0.42 ARG 63 -0.32 TYR 37

GLY 93 0.69 GLU 64 -0.31 TYR 37

GLY 93 0.92 TYR 65 -0.20 SER 40

GLY 93 1.17 GLN 66 -0.16 SER 40

GLY 93 1.23 THR 67 -0.08 GLY 23

GLY 93 1.37 ARG 68 -0.07 TRP 160

GLY 93 1.28 GLN 69 -0.13 LYS 162

GLY 93 1.15 ASN 70 -0.16 LYS 162

GLY 93 1.28 GLN 71 -0.11 ASP 163

GLY 93 1.28 CYS 72 -0.10 GLY 23

GLY 93 1.40 PHE 73 -0.14 SER 40

GLY 93 0.98 TYR 74 -0.23 SER 40

GLY 94 0.78 ASN 75 -0.33 SER 40

GLY 94 0.43 SER 76 -0.37 TYR 37

ASN 75 0.25 SER 77 -0.33 GLU 36

ASN 75 0.23 TYR 78 -0.38 LYS 177

PHE 73 0.28 LEU 79 -0.41 LYS 177

PHE 73 0.28 ASN 80 -0.47 LYS 177

GLN 69 0.22 VAL 81 -0.54 LYS 177

GLN 69 0.24 GLN 82 -0.50 LYS 177

GLN 69 0.18 ARG 83 -0.57 LYS 177

GLN 69 0.20 GLU 84 -0.51 LYS 177

GLN 69 0.23 ASN 85 -0.46 LYS 177

GLN 69 0.18 GLY 86 -0.50 LYS 177

ARG 68 0.25 THR 87 -0.45 LYS 177

ARG 68 0.27 VAL 88 -0.44 LYS 177

ARG 68 0.38 SER 89 -0.34 LYS 177

PHE 73 0.51 ARG 90 -0.30 TYR 115

PHE 73 0.88 TYR 91 -0.32 ASP 117

GLN 66 1.10 GLU 92 -0.30 ASP 118

PHE 73 1.40 GLY 93 -0.35 ASP 118

PHE 73 1.21 GLY 94 -0.39 ASP 118

GLN 69 0.92 ARG 95 -0.49 ASP 117

PHE 73 0.68 GLU 96 -0.46 ASP 117

ARG 68 0.57 HIS 97 -0.47 ASP 117

ARG 68 0.41 VAL 98 -0.39 ASP 117

ARG 68 0.30 ALA 99 -0.37 LYS 177

ARG 68 0.21 HIS 100 -0.40 LYS 177

ARG 68 0.16 LEU 101 -0.46 LYS 177

GLU 92 0.15 LEU 102 -0.42 LYS 177

GLU 92 0.18 PHE 103 -0.42 LYS 177

GLU 92 0.18 LEU 104 -0.35 LYS 177

GLY 93 0.18 ARG 105 -0.34 LYS 177

GLY 93 0.24 ASP 106 -0.34 LYS 177

GLY 93 0.24 THR 107 -0.42 LYS 177

GLY 93 0.31 LYS 108 -0.38 LYS 177

GLY 93 0.31 THR 109 -0.36 LYS 177

GLU 92 0.29 LEU 110 -0.39 LYS 177

GLU 92 0.26 MET 111 -0.36 LYS 177

GLU 92 0.25 PHE 112 -0.35 LYS 177

ILE 44 0.18 GLY 113 -0.34 LYS 177

GLN 69 0.19 SER 114 -0.33 LYS 177

PRO 10 0.22 TYR 115 -0.45 HIS 97

PRO 10 0.24 LEU 116 -0.36 HIS 97

PRO 10 0.26 ASP 117 -0.49 ARG 95

PRO 10 0.20 ASP 118 -0.47 ARG 95

VAL 9 0.16 GLU 119 -0.35 ARG 95

PRO 10 0.14 LYS 120 -0.34 ARG 95

PRO 10 0.16 ASN 121 -0.28 ARG 95

PRO 10 0.17 TRP 122 -0.27 LYS 177

PRO 10 0.14 GLY 123 -0.26 LYS 177

GLU 92 0.17 LEU 124 -0.28 LYS 177

GLU 92 0.34 SER 125 -0.27 LYS 177

GLU 92 0.37 PHE 126 -0.26 LYS 177

GLU 92 0.43 TYR 127 -0.29 LYS 177

GLY 93 0.42 ALA 128 -0.29 LYS 177

GLY 93 0.43 ASP 129 -0.33 LYS 177

GLY 93 0.49 LYS 130 -0.19 LYS 177

GLY 93 0.57 PRO 131 -0.15 ASP 159

GLY 93 0.50 GLU 132 -0.18 ASP 159

GLY 93 0.40 THR 133 -0.17 ASP 159

GLY 93 0.34 THR 134 -0.15 ASP 159

GLY 93 0.29 LYS 135 -0.12 LYS 177

GLY 93 0.26 GLU 136 -0.17 LYS 177

GLY 93 0.28 GLN 137 -0.21 LYS 177

GLY 93 0.29 LEU 138 -0.17 LYS 177

GLY 93 0.22 GLY 139 -0.18 LYS 177

GLY 93 0.20 GLU 140 -0.24 LYS 177

GLY 93 0.22 PHE 141 -0.23 LYS 177

GLY 93 0.19 TYR 142 -0.19 LYS 177

GLY 93 0.13 GLU 143 -0.22 LYS 177

GLU 92 0.11 ALA 144 -0.26 LYS 177

GLY 93 0.10 LEU 145 -0.22 LYS 177

ALA 16 0.08 ASP 146 -0.21 LYS 177

ALA 16 0.10 CYS 147 -0.25 LYS 177

VAL 9 0.10 LEU 148 -0.24 LYS 177

LYS 161 0.08 ARG 149 -0.20 LYS 177

ASP 159 0.10 ILE 150 -0.19 LYS 177

LYS 161 0.11 PRO 151 -0.14 LYS 177

GLY 93 0.20 ARG 152 -0.13 LYS 177

GLY 93 0.22 SER 153 -0.12 SER 76

GLY 93 0.21 ASP 154 -0.16 SER 76

GLY 93 0.31 VAL 155 -0.14 SER 76

GLY 93 0.45 MET 156 -0.14 SER 76

GLY 93 0.55 TYR 157 -0.10 GLU 43

GLY 93 0.70 THR 158 -0.11 THR 133

GLY 93 0.72 ASP 159 -0.18 GLU 132

GLY 93 0.73 TRP 160 -0.15 LYS 130

GLY 93 0.74 LYS 161 -0.16 ASN 70

GLY 93 0.86 LYS 162 -0.16 ASN 70

GLY 93 0.92 ASP 163 -0.14 GLY 23

GLY 93 1.01 LYS 164 -0.15 GLY 23

GLY 93 0.96 CYS 165 -0.16 GLY 23

GLY 93 0.78 GLU 166 -0.23 GLY 23

GLY 93 0.76 PRO 167 -0.25 GLY 23

GLY 93 0.82 LEU 168 -0.24 GLY 23

GLY 93 0.69 GLU 169 -0.32 GLY 23

GLY 93 0.61 LYS 170 -0.39 GLY 23

GLY 93 0.64 GLN 171 -0.39 ASP 19

GLY 93 0.54 HIS 172 -0.47 THR 52

GLY 93 0.43 GLU 173 -0.63 THR 22

GLY 93 0.44 LYS 174 -0.62 ASP 19

GLY 93 0.41 GLU 175 -0.63 ASN 54

GLY 93 0.31 ARG 176 -0.78 ASN 54

GLY 93 0.22 LYS 177 -0.92 LYS 55

GLY 93 0.28 GLN 178 -0.84 THR 56

If you find results from this site helpful for your research, please cite one of our papers:

K. Suhre & Y.H. Sanejouand, ElNemo: a normal mode web-server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Research, 32, W610-W614, 2004.
K. Suhre & Y.H. Sanejouand, On the potential of normal mode analysis for solving difficult molecular replacement problems. Acta Cryst. D vol.60, p796-799, 2004 © International Union of Crystallography.

elNémo is maintained by Yves-Henri Sanejouand.
It was developed by Karsten Suhre.
Between 2003 and 2014, it was hosted by IGS (Marseille).
Last modification: April 25th, 2023.

Should you encounter any unexpected behaviour, please let us know.

*** TRANSPORT PROTEIN 21-OCT-10 3APX ***

CA distance fluctuations for 240110225123556539

--- normal mode 8 ---

Should you encounter any unexpected behaviour,
please let us know.

* TRANSPORT PROTEIN 21-OCT-10 3APX *