The compilation of orthologous sequence data analyzed in the study (Ogata H., Fujibuchi W., Kanehisa M. "The size differences among mammalian introns are due to the accumulation of small deletions", FEBS Lett. 390, 99-103 ,1996). The lists include gene product names, GenBank accession numbers and HOVERGEN protein family codes.

Human/Rodent (106 genes)

Gene Product Name Human Rodent HOVERGEN
aldolase C X05196 M63656 FAM000495
apolipoprotein A-II X04898 M32360 FAM000689
apolipoprotein A-I X07496 X64263 FAM001258
adenine phosphoribosyltransferase Y00486 M11310 FAM000907
sphingomyelinase (ASM-1) X63600 Z14132 FAM000695
beta-3-adrenergic receptor X72861 X72862 FAM000055
interleukin 5 J03478 X06271 FAM000783
bone Gla protein X04143 M25490 FAM000121
interleukin 6 Y00081 M20572 FAM000432
cardiac alpha-myosin heavy chain Z20656 L15351 FAM001557
CD14 X06882 M34510 FAM000710
CD7 M37271 U23462 FAM000937
c-fos proto-oncogene K00650 V00727 FAM001679
creatine kinase B X15334 M74149 FAM000617
prepro-oxytocin-neurophysin I M11186 M88355 FAM000353
cystatin C (cst3) X52255 U10098 FAM000527
platelet factor 4 M26167 M15254 FAM000528
beta-enolase X56832 X61600 FAM000627
erythropoietin M11319 M12930 FAM000965
fau X65921 L33715 FAM000441
granulocyte colony stimulating factor X03656 X05402 FAM000521
granulocyte-macrophage colony-stimulating factor M13207 X03020 FAM000994
presomatotropin (growth hormone) V00520 J00740 FAM000014
GST-P (glutathione S-transferase pi) M24485 L29427 FAM000425
gonadotropin-releasing hormone X15215 M31670 FAM002205
apurinic/apyrimidinic endonuclease M92444 U12273 FAM000404
hsp70 Y00371 Y00054 FAM000300
hsp 27 X03900 S67755 FAM000250
transition protein 2 X63759 M60254 FAM000148
preproinsulin J00265 X04724 FAM000008
int-1 proto-oncogene (Wnt-1) X03072 K02593 FAM000030
int-2 proto-oncogene X14445 Y00848 FAM002370
alpha-lactalbumin X05153 Y00726 FAM000327
LMP-2 polypeptide Z14977 D14566 FAM000800
mts1 Z33457 X06916 FAM001563
neurofilament subunit M Y00067 X05640 FAM001328
N-myc protein M13241 X03919 FAM001383
ornithine decarboxylase X16277 X07392 FAM000348
NGFI-C (zinc finge protein) X69438 M92433 FAM001600
M2-type pyruvate kinase X56494 M24359 FAM000553
phenylethanolamine N-methylase X52730 L12687 FAM000365
c-Ha-ras1 proto-oncogene J00277 M13011 FAM000175
androgen-binding protein X16349 M19993 FAM001618
spermidine/spermine N1-acetyltransferase Z14136 L10245 FAM001116
TNF-alpha X02910 L00981 FAM000454
TNF-beta X02911 Y00137 FAM000455
Clara cells 10 kda secretory protein U01102 U01247 FAM000673
surfactant protein-C (SP-C) U02948 M38314 FAM001071
vasopressin receptor V2 L22206 Z22758 FAM000102
B lymphocyte lineage restricted mb-1 U05259 M31773 FAM001096
ribosomal protein S24 U12202 X71972 FAM001102
peripheral-type benzodiazepine receptor U12421 M84221 FAM000357
protamine 1 M60331 Z11545 FAM000033
insulin-like growth factor binding protein-1 M74587 L22979 FAM000305
skeletal alpha-actin M20543 M12347 FAM000492
atrial natriuretic factor K02043 K02781 FAM000197
ATP/ADP translocator (ANT1) J04982 X61667 FAM000422
apolipoprotein A-IV M14642 M13966 FAM001259
apolipoprotein E M10065 D00466 FAM001257
cathepsin G J04990 M96801 FAM001236
cholesterol esterase M94579 M69157 FAM001304
cytochrome c oxidase subunit Vb M59250 M77040 FAM000949
C-reactive protein M11880 X13588 FAM000593
alpha-B-crystallin M28638 U04320 FAM000248
peripherin L14565 M26232 FAM001327
myotonic dystrophy protein kinase L08835 Z38015 FAM001420
gadd45 L24498 U00937 FAM000597
galactose-1-phosphate uridyl transferase M96264 L05541 FAM000979
P40 T-cell and mast cell growth factor M30135 M30136 FAM001025
HRY L19314 D16464 FAM002244
hepatocyte growth factor M74179 M74180 FAM001247
transforming protein (hst) J02986 X14849 FAM000277
interleukin 2 receptor gamma chain L19546 U21795 FAM001998
macrophage migration inhibitory factor L19686 U19825 FAM000546
anti-Mullerian hormone K03474 X63240 FAM000333
retinoic acid inducible factor (MK) M94250 M34094 FAM000429
L-myc protein M19720 X13945 FAM001385
nucleolin M60858 X07699 FAM001318
opsin K02281 M55171 FAM000105
plasminogen activator inhibitor-1 J03764 J05206 FAM000038
proliferating cell nuclear antigen J04718 X57800 FAM001063
peptide YY L25648 S57220 FAM000378
phosphoglyceromutase J05073 Z17319 FAM000921
pim-1 proto-oncogene M27903 M13945 FAM001706
pulmonary surfactant apoprotein M30838 S48768 FAM001517
parathyroid hormone J00301 K01268 FAM000372
phospholipase A-2 M22431 M37127 FAM000028
rig/ribosomal protein S15 M32405 D11388 FAM000559
rod outer segment membrane protein 1 M96759 M96760 FAM001090
ribosomal protein S14 M13934 M35008 FAM000602
preprosomatostatin J00306 X51468 FAM000371
Thy-1 glycoprotein M11749 X03151 FAM000566
transition protein 1 M59924 X07284 FAM002356
von Ebner's gland protein L14927 X74805 FAM001013
troponin C M37984 J04971 FAM001638
thyrotropin beta (TSH-beta) subunit M21024 M22740 FAM000013
ubiquitin-like protein J03589 J04761 FAM000444
erythropoietin receptor S45332 X53081 FAM000966
melanin concentrating hormone S63697 M62641 FAM001038
cardiac beta myosin heavy chain X52889 L12104 FAM001557
vasopressin-neurophysin II M11166 M88354 FAM000353
alpha subunit of murine cytokine (MIP1/SCI) M23178 X53372 FAM000528
protamine 2 M60332 X07626 FAM000033
cytoplasmic beta-actin M10277 U20114 FAM000492
brain natriuretic protein M31776 D16497 FAM000197
serum amyloid P component D00097 X16899 FAM000593

Human/Artiodactyl (31 genes)

Gene Product Name Human Artiodactyl HOVERGEN
alpha 1 globin J00153 J00043 FAM000215
apolipoprotein C-III X03120 L00627 FAM000615
apolipoprotein A-I X07496 L00626 FAM001258
vasopressin-neurophysin II M11166 X00503 FAM000353
gastrin X00183 M31657 FAM000283
transition protein 2 L03378 X56400 FAM000148
interferon-gamma V00536 X53085 FAM000303
preproinsulin V00565 U00659 FAM000008
alpha-lactalbumin X05153 X06366 FAM000327
metallothionein-II J00271 X07975 FAM001041
alkaline phosphatase J03252 L07733 FAM000200
phenylethanolamine N-methyltransferase X52730 M36706 FAM000365
tumor necrosis factor alpha X02910 Z14137 FAM000454
tumor necrosis factor beta X02911 X54859 FAM000455
protamine 1 U15422 M18396 FAM000033
skeletal alpha-actin M20543 U02285 FAM000492
leukemia inhibitory factor M63420 D50337 FAM000894
atrial natriuretic factor K02043 M13145 FAM000197
ATP synthase alpha subunit D28126 X64565 FAM000207
C-type natriuretic peptide M64710 M64758 FAM000948
transforming protein (hst) J02986 U15969 FAM000277
interstitial retinol binding protein J05253 M20748 FAM000317
peptide YY L25648 L37369 FAM000378
preproparathyroid hormone J00301 K01938 FAM000372
transition protein 1 M59924 X65041 FAM002356
trichohyalin L09190 Z18361 FAM001561
alpha-2 globin J00153 J00044 FAM000215
prepro-oxytocin-neurophysin I M11186 X00502 FAM000353
metallothionein-I-A K01383 X04626 FAM001041
protamine 2 U15422 X60353 FAM000033
brain natriuretic protein M31776 M25547 FAM000197

Rodent/Artiodactyl (28 genes)

Gene Product Name Rodent Artiodactyl HOVERGEN
alpha-lactalbumin Y00726 X06366 FAM000327
metallothionein I D10551 M76977 FAM001041
skeletal alpha actin M12347 U02285 FAM000492
protamine 1 X07625 M18396 FAM000033
insulin II X04724 U00659 FAM000008
apolipoprotein A-I X64263 L00626 FAM001258
beta-casein X13484 M55158 FAM000233
hst X14849 U15969 FAM000277
myogenic regulatory factor (MyoD) M84176 U12574 FAM001622
tumor necrosis factor-beta (lymphotoxin) Y00137 Z14137 FAM000455
tumor necrosis factor-alpha Y00467 Z14137 FAM000454
follicle stimulating hormone beta subunit (FSH-beta) U12932 D00621 FAM000013
steroid 21-hydroxylase M15009 M11267 FAM002884
atrial natriuretic factor K02781 M13145 FAM000197
intestinal alkaline phosphatase (IAP) M61705 L07733 FAM000200
oxytocin-neurophysin I M88355 X00502 FAM000353
phenylethanolamine N-methyltransferase (PNMT) L12687 M36706 FAM000365
transition protein 2 M60254 X56400 FAM000148
growth hormone (presomatotropin) J00739 M57764 FAM000014
lysozyme L12459 M95097 FAM000328
peptide YY S57220 L37369 FAM000378
parathyroid hormone K01268 K01938 FAM000372
transition protein 1 (Stp-1) X07284 X65041 FAM002356
metallothionein II M11794 X07975 FAM001041
protamine 2 X07626 X60353 FAM000033
lutropin (LH) beta subunit J00749 M11506 FAM000013
brain natriuretic peptide (BNP) D16497 M25547 FAM000197
vasopressin-neurophysin II M88354 X00503 FAM000353

Human/Old World Monkey (50 genes)

Gene Product Name Human Monkey HOVERGEN
interleukin 11 M57765 M57766 FAM001021
3-beta-hydroxysteroid dehydrogenase M67466 M67467 FAM000399
amyloid beta protein precursor Y00264 M58727 FAM001337
alpha-1 globin J00153 X05289 FAM000215
apolipoprotein C-III X03120 X68359 FAM000615
apolipoprotein A-II X02905 X68360 FAM000689
apolipoprotein A-IV M14642 X68361 FAM001259
apolipoprotein A-I X07496 M83242 FAM001258
apolipoprotein C-II X05151 M86345 FAM000614
thioredoxin X77584 M84643 FAM000565
beta-1-adrenergic receptor J03019 X75540 FAM000055
5' fetal gamma-globin gene ( 1 (G) gamma ) V00515 M19434 FAM000214
carbonic anhydrase I M33987 L25082 FAM001684
CAMPATH-1 (CDw52) antigen X62466 X67495 FAM002428
CD59 M95708 L22862 FAM002412
interleukin 8 M28130 U19839 FAM000528
tissue inhibitor of metalloproteinases X03124 L37295 FAM000331
erythropoietin M11319 M18189 FAM000965
metallothionein II J00271 K00485 FAM001041
chorionic somatomammotropin 1 K02401 L16552 FAM000014
histone H1T M97755 M97756 FAM001546
plasminogen X05199 J04697 FAM001247
protamine 2 M60332 X71338 FAM000033
interleukin 2 X00695 U19846 FAM000312
preprokallikrein X13561 L10039 FAM001230
lipoprotein lipase M15856 U18091 FAM000618
CD9 M38690 D10726 FAM000022
p53 X54156 X16384 FAM001642
preprourokinase K03226 X51935 FAM001245
phosphatidylethanolamine binding protein X75252 X73137 FAM003042
preproinsulin J00265 X61092 FAM000008
TNF-alpha X02910 X62141 FAM000454
epididymal secretory protein X67698 X78134 FAM001901
apolipoprotein E M10065 M29322 FAM001257
CD4 M35160 M31134 FAM000572
interleukin 12 alpha (40 kDa) subunit M65272 U19841 FAM000943
interleukin-3 M20137 X51890 FAM000658
glycoprotein gp1b-beta chain U07983 L05927 FAM000113
UV-damaged DNA-binding protein L40326 L20216 FAM002347
interleukin 10 M57627 L26030 FAM001020
lysozyme J03801 X60237 FAM000328
sparm protein 10 M82968 S56458 FAM001114
surfactant protein C J03890 U06694 FAM001071
prostatic secretory protein S67815 M92161 FAM000831
small proline-rich protein M84757 M83999 FAM001118
pro-opiomelanocortin (POMC) K02406 M19658 FAM000160
somatostatin I J00306 M19318 FAM000371
3' fetal gamma-globin gene ( 2 (A) gamma ) V00517 M19433 FAM000214
chorionic somatomammotropin 3 M15894 L16554 FAM000014
prostate specific antigen M27274 X73560 FAM001230

Mouse/Rat (35 genes)

Gene Product Name Mouse Rat HOVERGEN
mAmh anti-Mullerian hormone X63240 S98336 FAM000333
apolipoprotein A-I X64263 J02597 FAM001258
cytochrome c X01756 K00750 FAM000643
immediate-early serum-responsive JE M19681 X17053 FAM000338
ferritin L-subunit L39879 J02741 FAM000533
gamma E-crystallin X57855 X00271 FAM000211
preproinsulin 2 X04724 V01243 FAM000008
metallothionein 1 V00835 M11794 FAM001041
MyoD X61655 M84176 FAM001622
N-myc X03919 X63281 FAM001383
ornithine decarboxylase X07392 J04792 FAM000348
preprosomatostatin X51468 J00787 FAM000371
protamine 2 X07626 X14674 FAM000033
membrane glycoprotein (Thy-1) M10246 X02002 FAM000566
lymphotoxin tumor necrosis factor beta Y00137 L00981 FAM000455
tumor necrosis factor alpha Y00467 L00981 FAM000454
osteocalcin L24429 M25490 FAM000121
thyrotropin beta-subunit M22740 M13897 FAM000013
skeletal alpha-actin M12347 V01218 FAM000492
alpha B-crystallin M73741 U04320 FAM000248
atrial natriuretic polypeptide K02781 K02062 FAM000197
apolipoprotein E D00466 J02582 FAM001257
apolipoprotein A-IV M13966 M13508 FAM001259
adenine phosphoribosyltransferase M11310 L04970 FAM000907
creatine kinase M74149 M18668 FAM000617
cytochrome c oxidase subunit Vb M77040 D10951 FAM000949
gonadotropin-releasing hormone M14872 M31670 FAM002205
interleukin 6 M20572 M26745 FAM000432
oxytocin-neurophysin M88355 K01701 FAM000353
phenylethanolamine N-methylase L12687 X75333 FAM000365
surfactant protein SP-C M38314 U07796 FAM001071
regenerating protein I D14010 D26164 FAM001502
insulin-like growth factor-binding protein-1 S72406 L22979 FAM000305
metallothionein 2 K02236 M11794 FAM001041
type-B natriuretic peptide S58667 M60731 FAM000197

Human/Hominoid/Old World Monkey (10 genes)

Gene Product Name Human Hominoid Monkey HOVERGEN
CD4 M35160 M31135 M31134 FAM000572
rhesus polypeptide X63098 L37051 S70343 FAM000742
interleukin 2 X00695 K03174 U19846 FAM000312
interleukin 3 M20137 M14744 X51890 FAM000658
alpha-1-globin J00153 M12157 X05289 FAM000215
epididymal secretory protein X67698 U25748 X78134 FAM001901
gamma-globin-1(G) V00515 J05174 M19434 FAM000214
protamine 2 M60332 X71339 X71338 FAM000033
preproinsulin J00265 X61089 X61092 FAM000008
gamma-globin-2(A) V00517 J05174 M19433 FAM000214