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Jean-Michel Claverie

PU-PH, Directeur du laboratoire

Tel : 04 91 82 54 20



BioSketch :
Jean-Michel Claverie is full professor of Genomics and Bioinformatics at the School of Medicine of Aix-Marseille University, director of the Mediterranean Institute of Microbiology, and head of the Structural and Genomic Information Laboratory, a unit of the French National Research Center (CNRS) that he founded in 1996.
He got his initial training both in biochemistry, computer science and theoretical particle physics at the University of Paris and combined his multidisciplinary education into a Doctorate (Dr. Sc.) on the subject of mathematical modeling of biological system in 1977. He then successively hold research positions at the Jacques Monod Institute (CNRS) in Paris, then at the Salk Institute in La Jolla, before creating in 1982 one of the first pre-Internet era computational biology laboratory at the Pasteur Institute (Paris) where he remained until 1990. He then returned to the USA, at the National Center for Biotechnology Information (NCBI, NLM-NIH, Bethesda) where he participated to the exciting beginning of the genomic era, as a NIH senior Fogarty scientist, until 1995. Before returning to France, he spent one year as director of bioinformatics at Incyte pharmaceuticals (Palo Alto).
Owing to his theoretical background, Jean-Michel Claverie worked on a wide range of topics ranging from the mathematical modeling of ultracentrifugation experiments, microbial and human genetics, cellular immunology, and more recently microbial genomics. Following the discovery and initial characterization of Mimivirus, the first "giant" virus in 2003, he then focused on the search for more giant and/or unconventional viruses in increasingly exotic environments. In the last ten years, his laboratory described four new families encompassing the largest known viruses in terms of particle and genome sizes : the Mega/Mimiviridae, the Pandoraviruses, Pithovirus and Mollivirus. The last two viruses were revived from 30,000 year-old Siberian permafrost, opening the field of "Paleovirology". While continuously searching for more ancient and/or exotic viruses, his laboratory is also involved in deciphering the biology and evolutionary origin of these giant viruses. The laboratory’s approaches include structural, molecular, and cellular biology, high throughput proteomics, genome and transcriptome sequencing, environmental sampling, large-scale comparative genomics and metagenomics, together with the development of relevant bioinformatics methods for sequence analysis and data mining.
Dr. Jean-Michel Claverie co-authored more than 220 scientific publications, as well as the best-seller book "Bioinformatics for Dummies". He was a member of the Board of reviewing editors of Science for 10 years (2002-2012). He was recipient of the CNRS Silver medal in 2003, and a Knight in the National Order of the Academic Palms (2016).

  • EDUCATION 1977 Dr. Sc. "Mathematical modelling and simulation of biological systems", Institut Jacques Monod, University Paris 7, France 1972 Master (DEA) in Biochemistry, University Paris 7, Paris, France 1973 Master (DEA) in Applied Computer Science, Univ. Paris 6, Paris, France 1974 Master (DEA) in Theoretical Physics, University Paris 6 & 7 & 11, Paris, France
  • CURRENT POSITION(S) 2004 – today Professor of Medicine (PU/PH), Biostatistics and Genomics, Aix-Marseille Univ. & APHM 2008 – today Head, Mediterranean Institute of Microbiology (CNRS-AMU), France 1995 – today Founder & head, Structural & Genomic Information Lab. (CNRS-AMU), Marseille, France
  • PREVIOUS POSITIONS 1996 – 2004 Senior CNRS researchers (Director level 1) 1990 – 1995 Senior Fogarty visiting Scientist, NCBI-National Institutes of Health, Bethesda, USA 1982 – 1992 Head of laboratory (Computational Biology), Institut Pasteur, Paris, France 1989 – 1990 Professor of Immunology, Rouen University, Rouen, France 1975 – 1995 CNRS researcher (from junior to director grade, with on leave periods when abroad)

  1. Okamoto K, Miyazaki N, Reddy HKN, Hantke MF, Maia FRNC, Larsson DSD, Abergel C, Claverie JM, Hajdu J, Murata K, Svenda M (2018) Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly. Virology.516 ;:239-245,2018 Mar  - PMID:29407382

  2. Okamoto K, Miyazaki N, Song C, Maia FRNC, Reddy HKN, Abergel C, Claverie JM, Hajdu J, Svenda M, Murata K (2017) Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy. Sci Rep.7 ;1:13291,2017 Oct 16 - PMID:29038566

  3. Gallot-Lavallee L, Blanc G, Claverie JM (2017) Comparative genomics of Chrysochromulina Ericina Virus (CeV) and other microalgae-infecting large DNA viruses highlight their intricate evolutionary relationship with the established Mimiviridae family. J Virol. ; :,2017 Apr 26 - PMID:28446675

  4. Fabre E, Jeudy S, Santini S, Legendre M, Trauchessec M, Couté Y, Claverie JM, Abergel C (2017) Noumeavirus replication relies on a transient remote control of the host nucleus. Nat Commun.8 ;:15087,2017 Apr 21 - PMID:28429720

  5. Villain A, Kojadinovic M, Puppo C, Prioretti L, Hubert P, Zhang Y, Grégori G, Roulet A, Roques C, Claverie JM, Gontero B & Guillaume Blanc (2017) Complete mitochondrial genome sequence of the freshwater diatom Asterionella formosa Mitochondrial DNA Part B, 2:1, 97-98,2017 Feb

  6. Claverie JM, Abergel C (2016) Giant viruses: update, enigmas, controversies and perspectives Médecine/Sciences ;32(12) 1087-1096,2016 Dec - PMID:28044972

  7. Abergel C, Claverie JM (2016) Les virus géants : des fossiles vivants de cellules primitives ? Pour la Science 469 : 50-53,2016 dec

  8. Abergel C, Claverie JM (2016) Les virus ont-ils joué un rôle dans l’apparition du noyau ? Pour la Science 469 : 46.,2016 dec

  9. Ekeberg T, Svenda M, Seibert MM, Abergel C, Maia FR, Seltzer V, DePonte DP, Aquila A, Andreasson J, Iwan B, Jonsson O, Westphal D, Odic D, Andersson I, Barty A, Liang M, Martin AV, Gumprecht L, Fleckenstein H, Bajt S, Barthelmess M, Coppola N, Claverie JM, Loh ND, Bostedt C, Bozek JD, Krzywinski J, Messerschmidt M, Bogan MJ, Hampton CY, Sierra RG, Frank M, Shoeman RL, Lomb L, Foucar L, Epp SW, Rolles D, Rudenko A, Hartmann R, Hartmann A, Kimmel N, Holl P, Weidenspointner G, Rudek B, Erk B, Kassemeyer S, Schlichting I, Struder L, Ullrich J, Schmidt C, Krasniqi F, Hauser G, Reich C, Soltau H, Schorb S, Hirsemann H, Wunderer C, Graafsma H, Chapman H, Hajdu J (2016) Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser. Sci Data.3 ;:160060,2016 aug - PMID:27479754

  10. Claverie JM, Abergel C (2016) CRISPR-Cas-like system in giant viruses: why MIMIVIRE is not likely to be an adaptive immune system. Virol Sin. ; :,2016 Jun 13 - PMID:27315813

  11. Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra WH, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C, Stoeck T (2016) Benthic protists: the under-charted majority. FEMS Microbiol Ecol. ; :,2016 Jun 5 - PMID:27267932

  12. Lescot M, Hingamp P, Kojima KK, Villar E, Romac S, Veluchamy A, Boccara M, Jaillon O, Iudicone D, Bowler C, Wincker P, Claverie JM, Ogata H (2016) Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages. ISME J. ; :,2016 may - PMID:26613339

  13. Bordez L, Jourand P, Ducousso M, Carriconde F, Cavaloc Y, Santini S, Claverie JM, Wantiez L, Leveau A, Amir H (2016) Distribution patterns of microbial communities in ultramafic landscape: a metagenetic approach highlights the strong relationships between diversity and environmental traits. Mol Ecol. ; :,2016 Mar 19 - PMID:26994404

  14. Claverie JM, Abergel C (2016) Giant viruses: The difficult breaking of multiple epistemological barriers. Stud Hist Philos Biol Biomed Sci. ; :,2016 Mar 10 - PMID:26972873

  15. Abergel C, Claverie JM (2016) Diversité des virus géants Virologie, Vol 20, n◦ 1, 2016 jan

  16. Gallot-Lavallée L, Pagarete A, Legendre M, Santini S, Sandaa RA, Himmelbauer H, Ogata H, Bratbak G, Claverie JM (2015) The 474-Kilobase-Pair Complete Genome Sequence of CeV-01B, a Virus Infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae). Genome Announc.3 ;6 :,2015 dec - PMID:26634761

  17. Doutre G, Arfib B, Rochette P, Claverie JM, Bonin P, Abergel C (2015) Complete Genome Sequence of a New Member of the Marseilleviridae Recovered from the Brackish Submarine Spring in the Cassis Port-Miou Calanque, France. Genome Announc.3 ;6 :,2011 nov - PMID:26607881

  18. Itan Y, Shang L, Boisson B, Patin E, Bolze A, Moncada-Vélez M, Scott E, Ciancanelli MJ, Lafaille FG, Markle JG, Martinez-Barricarte R, de Jong SJ, Kong XF, Nitschke P, Belkadi A, Bustamante J, Puel A, Boisson-Dupuis S, Stenson PD, Gleeson JG, Cooper DN, Quintana-Murci L, Claverie JM, Zhang SY, Abel L, Casanova JL (2015) The human gene damage index as a gene-level approach to prioritizing exome variants. Proc Natl Acad Sci U S A. ; :,2015 Oct 19 - PMID:26483451

  19. Claverie JM, Abergel C (2015) On a ouvert la glacière de Pandore Biofutur 369 : 54-55.,2015 oct

  20. Philippe N, Maigre L, Santini S, Pinet E, Claverie JM, Davin-Régli AV, Pagès JM, Masi M (2015) In Vivo Evolution of Bacterial Resistance in Two Cases of Enterobacter aerogenes Infections during Treatment with Imipenem. PLoS One.10 ;9:e0138828,2015 sep - PMID:26398358

  21. Abergel C, Legendre M, Claverie JM (2015) The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus. FEMS Microbiol Rev. ; :,2015 Sep 20 - PMID:26391910

  22. Legendre M, Lartigue A, Bertaux L, Jeudy S, Bartoli J, Lescot M, Alempic JM, Ramus C, Bruley C, Labadie K, Shmakova L, Rivkina E, Couté Y, Abergel C, Claverie JM (2015) In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba. Proc Natl Acad Sci U S A. ; :,2015 Sep 8 - PMID:26351664

  23. Jourda C, Santini S, Rocher C, Le Bivic A, Claverie JM (2015) Draft Genome Sequence of an Alphaproteobacterium Associated with the Mediterranean Sponge Oscarella lobularis. Genome Announc.3 ;5 :,2015 sept - PMID:26337883

  24. Jourda C, Santini S, Rocher C, Le Bivic A, Claverie JM (2015) Mitochondrial Genome Sequence of the Glass Sponge Oopsacas minuta. Genome Announc.3 ;4 :,2015 - PMID:26227597

  25. Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, Guillou L, Jaillon O, Kooistra WH, Logares R, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Probert I, Romac S, Richards T, Santini S, Shalchian-Tabrizi K, Siano R, Simon N, Stoeck T, Vaulot D, Zingone A, de Vargas C (2015) Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing. Environ Microbiol. doi : 10.1111/1462-2920.12955,2015 - PMID:26119494

  26. Priet S, Lartigue A, Debart F, Claverie JM, Abergel C (2015) mRNA maturation in giant viruses: variation on a theme. Nucleic Acids Res. ; :,2015 Mar 16 - PMID:25779049

  27. Ekeberg T, Svenda M, Abergel C, Maia FR, Seltzer V, Claverie JM, Hantke M, Jonsson O, Nettelblad C, van der Schot G, Liang M, DePonte DP, Barty A, Seibert MM, Iwan B, Andersson I, Loh ND, Martin AV, Chapman H, Bostedt C, Bozek JD, Ferguson KR, Krzywinski J, Epp SW, Rolles D, Rudenko A, Hartmann R, Kimmel N, Hajdu J (2015) Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser. Phys Rev Lett.114 ;9:098102,2015 Mar 6 - PMID:25793853

  28. Claverie J.-M., Abergel C (2015) Pandoravirus McGraw-Hill Year book of Science and Technology - 2015. (John Renie, ed.) ;pp 226-227 ;ISBN 978-0-07-183576-3 ISSN 0076-2016,2015

  29. Claverie JM, Abergel C (2014) La découverte de Mimivirus redéfinit la notion même de virus. Philippe Cramer (ed.), Le défi des maladies infectieuses, Edition Docis, Paris. , pp 85-89

  30. von Dassow P, John U, Ogata H, Probert I, Bendif EM, Kegel JU, Audic S, Wincker P, Da Silva C, Claverie JM, Doney S, Glover DM, Flores DM, Herrera Y, Lescot M, Garet-Delmas MJ, de Vargas C (2014) Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton. ISME J. ; :,2014 Dec 2 - PMID:25461969

  31. Lartigue A, Burlat B, Coutard B, Chaspoul F, Claverie JM, Abergel C (2014) The Megavirus chilensis Cu,Zn-Superoxide Dismutase: the first viral structure of a typical CCS-independent hyperstable dimeric enzyme. J Virol. ; :,2014 Oct 29 - PMID:25355875

  32. Doutre G, Philippe N, Abergel C, Claverie JM (2014) Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to the virus fitness. J Virol. ; :,2014 Oct 1 - PMID:25275139

  33. Claverie JM, Abergel C (2014) From extraordinary endocytobionts to Pandoraviruses. Comment on Scheid et al.: Some secrets are revealed: Parasitic keratitis amoebae as vectors of the scarcely described pandoraviruses to humans. Parasitol Res. ; :,2014 Aug 19 - PMID:25134945

  34. Mozar M, Claverie JM (2014) Expanding the Mimiviridae family using asparagine synthase as a sequence bait. Virology. ; :,2014 Jun 4 - PMID:24908633

  35. Claverie J-M, Abergel C (2014) Paléovirologie : Pithovirus : un virus géant venu du fond des âges Biofutur 33 (352), 50-51,2014 Mar 4

  36. Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Couté Y, Rivkina E, Abergel C, Claverie JM (2014) Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci U S A. ;111 (11) : 4274–4279,2014 Mar 3 - PMID:24591590

  37. Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R (2014) Patterns of Rare and Abundant Marine Microbial Eukaryotes. Curr Biol. ; :,2014 Apr 2 - PMID:24704080

  38. Abergel C, Claverie JM (2014) Pithovirus sibericum:awakening of a giant virus of more than 30 000 years. Med Sci (Paris).30 ;3:329-31,2014 Mar  - PMID:24685225

  39. Claverie J.-M. & Abergel C (2013) Les virus sont-ils vraiment des virus ? Virologie 17 : 217-228,2013 Dec 1

  40. Claverie JM (2013) Giant virus in the sea: Extending the realm of Megaviridae to Viridiplantae. Commun Integr Biol.6 ;6:e25685,2013 Nov 1 - PMID:24563700

  41. Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C (2013) Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science.341 ;6143:281-6,2013 Jul 19 - PMID:23869018

  42. Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G, Dacks JB, Delwiche CF, Dyhrman ST, Glockner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV, Allen AE, Bidle K, Borodovsky M, Bowler C, Brownlee C, Cock JM, Elias M, Gladyshev VN, Groth M, Guda C, Hadaegh A, Iglesias-Rodriguez MD, Jenkins J, Jones BM, Lawson T, Leese F, Lindquist E, Lobanov A, Lomsadze A, Malik SB, Marsh ME, Mackinder L, Mock T, Mueller-Roeber B, Pagarete A, Parker M, Probert I, Quesneville H, Raines C, Rensing SA, Riano-Pachon DM, Richier S, Rokitta S, Shiraiwa Y, Soanes DM, van der Giezen M, Wahlund TM, Williams B, Wilson W, Wolfe G, Wurch LL (2013) Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature.499 ;7457:209-13,2013 Jul 11 - PMID:23760476

  43. Santini S, Jeudy S, Bartoli J, Poirot O, Lescot M, Abergel C, Barbe V, Wommack KE, Noordeloos AA, Brussaard CP, Claverie JM (2013) Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proc Natl Acad Sci U S A.110 ;26:10800-5,2013 Jun 25 - PMID:23754393

  44. Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H (2013) Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J. ; :,2013 Apr 11 - PMID:23575371

  45. Jeanniard A, Dunigan DD, Gurnon JR, Agarkova IV, Kang M, Vitek J, Duncan G, McClung OW, Larsen M, Claverie JM, Van Etten JL, Blanc G (2013) Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses. BMC Genomics.14 ;1:158,2013 Mar 8 - PMID:23497343

  46. Claverie JM, Abergel C (2013) Open questions about giant viruses. Adv Virus Res.85 ;:25-56,2013  - PMID:23439023

  47. Jeudy S, Abergel C, Claverie JM, Legendre M (2012) Translation in giant viruses: a unique mixture of bacterial and eukaryotic termination schemes. PLoS Genet.8 ;12:e1003122,2012 Dec  - PMID:23271980

  48. Claverie JM, Abergel C (2012) The Concept of Virus in the Post-Megavirus Era Springer, Guenther Witzany Editor, Viruses : Essential Agents of Life : 187-202,2012 November

  49. Claverie JM, Abergel C (2012) Les virus géants, vestiges d'organismes cellulaires. Pour la Science 415 : 30-33,2012 May

  50. Piacente F, Marin M, Molinaro A, De Castro C, Seltzer V, Salis A, Damonte G, Bernardi C, Claverie JM, Abergel C, Tonetti M (2012) Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-D-glucose (Viosamine). J Biol Chem.287 ;5:3009-18,2012 Jan 27 - PMID:22157758

  51. Blanc G, Agarkova I, Grimwood J, Kuo A, Brueggeman A, Dunigan DD, Gurnon J, Ladunga I, Lindquist E, Lucas S, Pangilinan J, Proschold T, Salamov A, Schmutz J, Weeks D, Yamada T, Lomsadze A, Borodovsky M, Claverie JM, Grigoriev IV, Van Etten JL (2012) The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol.13 ;5:R39,2012 May 25 - PMID:22630137

  52. Legendre M, Arslan D, Abergel C, Claverie JM (2012) Genomics of Megavirus and the elusive fourth domain of Life. Commun Integr Biol.5 ;1:102-6,2012 Jan 1 - PMID:22482024

  53. Claverie JM (2012) Review of the book: "Life from an RNA world: the ancestor within" by M Yarus. Harvard Univ. Press. The Quarterly Review of Biology 87 : 66-67,2012 Jan

  54. Claverie JM, Abergel C (2011) Megavirus réécrit l'évolution des virus à ADN. Biofutur 327 (Décembre, p11),2011

  55. Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P (2011) A Holistic Approach to Marine Eco-Systems Biology. PLoS Biol.9 ;10:e1001177,2011 Oct  - PMID:22028628

  56. Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM (2011) Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci U S A.108 ;42:17486-91,2011 Oct 18 - PMID:21987820

  57. Yoshida T, Claverie JM, Ogata H (2011) Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids. Virol J.8 ;1:427,2011 Sep 7 - PMID:21899737

  58. Yoon CH, Schwander P, Abergel C, Andersson I, Andreasson J, Aquila A, Bajt S, Barthelmess M, Barty A, Bogan MJ, Bostedt C, Bozek J, Chapman HN, Claverie JM, Coppola N, DePonte DP, Ekeberg T, Epp SW, Erk B, Fleckenstein H, Foucar L, Graafsma H, Gumprecht L, Hajdu J, Hampton CY, Hartmann A, Hartmann E, Hartmann R, Hauser G, Hirsemann H, Holl P, Kassemeyer S, Kimmel N, Kiskinova M, Liang M, Loh NT, Lomb L, Maia FR, Martin AV, Nass K, Pedersoli E, Reich C, Rolles D, Rudek B, Rudenko A, Schlichting I, Schulz J, Seibert M, Seltzer V, Shoeman RL, Sierra RG, Soltau H, Starodub D, Steinbrener J, Stier G, Strüder L, Svenda M, Ullrich J, Weidenspointner G, White TA, Wunderer C, Ourmazd A (2011) Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering. Opt Express.19 ;17:16542-9,2011 Aug 15 - PMID:21935018

  59. Ogata H, Ray J, Toyoda K, Sandaa RA, Nagasaki K, Bratbak G, Claverie JM (2011) Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment. ISME J.5 ;7:1143-51,2011 Jul  - PMID:21248859

  60. Audic S, Lescot M, Claverie JM, Cloeckaert A, Zygmunt MS (2011) The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella. BMC Evol Biol.11 ;1:200,2011 Jul 11 - PMID:21745361

  61. Legendre M, Santini S, Rico A, Abergel C, Claverie JM (2011) Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing. Virol J.8 ;1:99,2011 Mar 4 - PMID:21375749

  62. Seibert MM, Ekeberg T, Maia FR, Svenda M, Andreasson J, Jonsson O, Odic D, Iwan B, Rocker A, Westphal D, Hantke M, Deponte DP, Barty A, Schulz J, Gumprecht L, Coppola N, Aquila A, Liang M, White TA, Martin A, Caleman C, Stern S, Abergel C, Seltzer V, Claverie JM, Bostedt C, Bozek JD, Boutet S, Miahnahri AA, Messerschmidt M, Krzywinski J, Williams G, Hodgson KO, Bogan MJ, Hampton CY, Sierra RG, Starodub D, Andersson I, Bajt S, Barthelmess M, Spence JC, Fromme P, Weierstall U, Kirian R, Hunter M, Doak RB, Marchesini S, Hau-Riege SP, Frank M, Shoeman RL, Lomb L, Epp SW, Hartmann R, Rolles D, Rudenko A, Schmidt C, Foucar L, Kimmel N, Holl P, Rudek B, Erk B, Homke A, Reich C, Pietschner D, Weidenspointner G, Struder L, Hauser G, Gorke H, Ullrich J, Schlichting I, Herrmann S, Schaller G, Schopper F, Soltau H, Kuhnel KU, Andritschke R, Schroter CD, Krasniqi F, Bott M, Schorb S, Rupp D, Adolph M, Gorkhover T, Hirsemann H, Potdevin G, Graafsma H, Nilsson B, Chapman HN, Hajdu J (2011) Single mimivirus particles intercepted and imaged with an X-ray laser. Nature.470 ;7332:78-81,2011 Feb 3 - PMID:21293374

  63. Claverie JM (2011) Radiographie ... biologique. Biofutur 319, 10,2011

  64. Santini S, Claverie JM, Mouz N, Rousselle T, Maza C, Monchois V, Abergel C (2011) The Conserved Candida albicans CA3427 Gene Product Defines a New Family of Proteins Exhibiting the Generic Periplasmic Binding Protein Structural Fold. PLoS One.6 ;4:e18528,2011  - PMID:21494601

  65. Claverie JM, Abergel C (2011) Family Mimiviridae. Virus Taxonomy, ninth report of the International Committee on Taxonomy of Viruses (ICTV) , Elsevier, Academic Press, ISBN : 978-0-12-384684-6. pp223-228,2011

  66. Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, Salamov A, Terry A, Yamada T, Dunigan DD, Grigoriev IV, Claverie JM, Van Etten JL (2010) The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell.22 ;9:2943-55,2010 Sep  - PMID:20852019

  67. Legendre M, Audic S, Poirot O, Hingamp P, Seltzer V, Byrne D, Lartigue A, Lescot M, Bernadac A, Poulain J, Abergel C, Claverie JM (2010) mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus. Genome Res.20 ;5:664-74,2010 May - PMID:20360389

  68. Toulza E, Shin MS, Blanc G, Audic S, Laabir M, Collos Y, Claverie JM, Grzebyk D (2010) Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae). Appl Environ Microbiol.76 ;13:4521-9,2010 Jul - PMID:20435767

  69. Dereeper A, Audic S, Claverie JM, Blanc G (2010) BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol.10 ;1:8,2010 Jan 12 - PMID:20067610

  70. Claverie JM, Abergel C (2010) Mimivirus: the emerging paradox of quasi-autonomous viruses. Trends Genet. ;pp. 431-437 :,2010 Aug 7 - PMID:20696492

  71. Claverie JM, Aurias A (2010) Mimivirus, un géant parmi les microbes. Biofutur 309 : 46-48.(en Français),2010

  72. Ogata H., Monier A., Claverie JM (2010) Distribution of Giant Viruses in Marine Environments. Global Change : Mankind-Marine Environment Interactions - Proceedings of the 13th French-Japanese Oceanography Symposium, Ceccaldi H.-J. et al. eds., Springer Science/Business Media B.V. ,2010

  73. Audic S, Lescot M, Claverie JM, Scholz HC (2009) Brucella microti: the genome sequence of an emerging pathogen. BMC Genomics.10 ;1:352,2009 Aug 4 - PMID:19653890

  74. Claverie JM, Ogata H (2009) Ten good reasons not to exclude giruses from the evolutionary picture. Nat Rev Microbiol.7 ;8:615 ; author reply 615,2009 Aug  - PMID:19561626

  75. Ogata H, Toyoda K, Tomaru Y, Nakayama N, Shirai Y, Claverie JM, Nagasaki K (2009) Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus. Virol J.6 ;1:178,2009 Oct 27 - PMID:19860921

  76. Monier A, Pagarete A, de Vargas C, Allen MJ, Read B, Claverie JM, Ogata H (2009) Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus. Genome Res.19 ;8:1441-9,2009 Aug - PMID:19451591

  77. Claverie JM, Grzela R, Lartigue A, Bernadac A, Nitsche S, Vacelet J, Ogata H, Abergel C (2009) Mimivirus&Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges. J Invertebr Pathol.101 ;3:172-80,2009 Jul - PMID:19457438

  78. von Dassow P, Ogata H, Probert I, Wincker P, Da Silva C, Audic S, Claverie JM, de Vargas C (2009) Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell. Genome Biol.10 ;10:R114,2009 Oct 15 - PMID:19832986

  79. Jeudy S, Lartigue A, Claverie JM, Abergel C (2009) Dissecting the unique nucleotide specificity of Mimivirus nucleoside diphosphate kinase. J Virol.83 ;14:7142-50,2009 Jul - PMID:19439473

  80. Claverie JM, Abergel C (2009) Mimivirus and its Virophage. Annu Rev Genet.43 ;:49-66,2009 - PMID:19653859

  81. Claverie JM, Abergel C, Ogata H (2009) Mimivirus. Curr Top Microbiol Immunol.328 ;:89-121,2009  - PMID:19216436

  82. Byrne D, Grzela R, Lartigue A, Audic S, Chenivesse S, Encinas S, Claverie JM, Abergel C (2009) The polyadenylation site of Mimivirus transcripts obeys a stringent hairpin rule. Genome Res.19 ;7:1233-42,2009 Jul  - PMID:19403753

  83. Lescot M, Audic S, Robert C, Nguyen TT, Blanc G, Cutler SJ, Wincker P, Couloux A, Claverie JM, Raoult D, Drancourt M (2008) The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. PLoS Genet.4 ;9:e1000185,2008 Sep  - PMID:18787695

  84. Monier A, Claverie JM, Ogata H (2008) Taxonomic distribution of large DNA viruses in the sea. Genome Biol.9 ;7:R106,2008 Jul 3 - PMID:18598358

  85. Ogata H, Claverie JM (2008) Microbiology. How to infect a Mimivirus. Science.321 ;5894:1305-6,2008 Sep 5 - PMID:18772426

  86. Monier A, Larsen JB, Sandaa RA, Bratbak G, Claverie JM, Ogata H (2008) Marine mimivirus relatives are probably large algal viruses. Virol J.5 ;1:12,2008 Jan 23 - PMID:18215256

  87. Claverie JM (2008) Mimivirus. Encyclopedia of Virology, 5 vols. (B.W.J. Mahy and M.H.V. Van Regenmortel, Editors), pp. 311-319 Oxford : Elsevier ,2008

  88. Vallenet D, Nordmann P, Barbe V, Poirel L, Mangenot S, Bataille E, Dossat C, Gas S, Kreimeyer A, Lenoble P, Oztas S, Poulain J, Segurens B, Robert C, Abergel C, Claverie JM, Raoult D, Médigue C, Weissenbach J, Cruveiller S (2008) Comparative analysis of Acinetobacters: three genomes for three lifestyles. PLoS ONE.3 ;3:e1805,2008  - PMID:18350144

  89. Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res.36 ;Web Server issue:W465-9,2008 Jul 1 - PMID:18424797

  90. Santini S, Monchois V, Mouz N, Sigoillot C, Rousselle T, Claverie JM, Abergel C (2008) Structural characterization of CA1462, the Candida albicans thiamine pyrophosphokinase. BMC Struct Biol.8 ;:33,2008  - PMID:18652651

  91. Monier A, Claverie JM, Ogata H (2007) Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. BMC Genomics.8 ;1:456,2007 Dec 10 - PMID:18070355

  92. Blanc G, Ogata H, Robert C, Audic S, Claverie JM, Raoult D (2007) Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome. Genome Res.17 ;11:1657-64,2007 Nov - PMID:17916642

  93. Claverie JM (2007) La Bioinformatique. Les Techniques de l`Ingénieur - in press,2007

  94. Abergel C, Rudinger-Thirion J , Giegé R, Claverie JM (2007) Virus-Encoded Aminoacyl-tRNA Synthetases: Structural and Functional Characterization of Mimivirus TyrRS and MetRS. J Virol.81 ;22:12406-17,2007 Nov - PMID:17855524

  95. Ogata H, Claverie JM (2007) Unique genes in giant viruses: regular substitution pattern and anomalously short size. Genome Res.17 ;9:1353-61,2007 Sep - PMID:17652424

  96. Claverie JM, Notredame C (2007) Bioinformatics for Dummies, 2nd Edition. Wiley, 436p,2007

  97. Abergel C, Monchois V, Byrne D, Chenivesse S, Lembo F, Lazzaroni JC, Claverie JM (2007) Structure and evolution of the Ivy protein family, unexpected lysozyme inhibitors in Gram-negative bacteria. Proc Natl Acad Sci U S A.104 ;15:6394-9,2007 Apr 10 - PMID:17405861

  98. Audic S, Robert C, Campagna B, Parinello H, Claverie JM, Raoult D, Drancourt M (2007) Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria. PLoS Genet.3 ;8:e138,2007 Aug 24 - PMID:17722982

  99. Blanc G, Ogata H, Robert C, Audic S, Suhre K, Vestris G, Claverie JM, Raoult D (2007) Reductive Genome Evolution from the Mother of Rickettsia. PLoS Genet.3 ;1:e14,2007 Jan 19 - PMID:17238289

  100. Unneberg P, Claverie JM (2007) Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data. PLoS ONE.2 ;2:e254,2007 - PMID:17330142

  101. Abergel C , Blanc G , Monchois V, Renesto P, Sigoillot C , Ogata H, Raoult D, Claverie JM (2006) Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity. Mol Biol Evol.23 ;11:2112-22,2006 Nov - PMID:16891376

  102. Claverie JM (2006) Viruses take center stage in cellular evolution. Genome Biology, 7:110,2006 - PMID:16787527

  103. Ogata H, {La Scola} B, Audic S, Renesto P, Blanc G, Robert C, Fournier PE, Claverie JM, Raoult D (2006) Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet.2 ;5:e76,2006 May - PMID:16703114

  104. Claverie JM, Ogata H, Audic S, Abergel C, Suhre K, Fournier PE (2006) Mimivirus and the emerging concept of "giant" virus. Virus Res.117 ;1:133-44,2006 Apr - PMID:16469402

  105. Benarroch D, Claverie JM, Raoult D, Shuman S (2006) Characterization of mimivirus DNA topoisomerase IB suggests horizontal gene transfer between eukaryal viruses and bacteria. J Virol.80 ;1:314-21,2006 Jan - PMID:16352556

  106. Fournier PE, Vallenet D, Barbe V, Audic S, Ogata H, Poirel L, Richet H, Robert C, Mangenot S, Abergel C, Nordmann P, Weissenbach J, Raoult D, Claverie JM (2006) Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet.2 ;1:e7,2006 Jan - PMID:16415984

  107. Jeudy S, Monchois V, Maza C, Claverie JM, Aberg C (2006) Crystal structure of Escherichia coli DkgA, a broad-specificity aldo-keto reductase. Proteins.62 ;1:302-7,2006 Jan 1 - PMID:16284956

  108. Jeudy S, Claverie JM, Abergel C (2006) The nucleoside diphosphate kinase from mimivirus: a peculiar affinity for deoxypyrimidine nucleotides. J Bioenerg Biomembr.38 ;3-4:247-54,2006 Aug  - PMID:16957983

  109. Bidaut G, Suhre K, Claverie JM, Ochs MF (2006) Determination of strongly overlapping signaling activity from microarray data. BMC Bioinformatics.7 ;:99,2006 - PMID:16507110

  110. Ogata H, Robert C, Audic S, Robineau S, Blanc G, Fournier PE, Renesto P, Claverie JM, Raoult D. (2005) Rickettsia felis, from Culture to Genome Sequencing. Ann N Y Acad Sci. ;1063:26-34,2005 Dec - PMID:16481487

  111. Suhre K, Audic S, Claverie JM (2005) Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes. Proc Natl Acad Sci U S A.102 ;41:14689-93,2005 Oct 11 - PMID:16203998

  112. Heritier C, Poirel L, Fournier PE, Claverie JM, Raoult D, Nordmann P. (2005) Characterization of the Naturally Occurring Oxacillinase of Acinetobacter baumannii. Antimicrob Agents Chemother. 49(10):4174-9,2005 Oct - PMID:16189095

  113. Claverie JM. (2005) Fewer genes, more noncoding RNA. Science. 309(5740):1529-30,2005 Sep 2 - PMID:16141064

  114. Ogata H, Renesto P, Audic S, Robert C, Blanc G, Fournier PE, Parinello H, Claverie JM, Raoult D (2005) The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol.3 ;8:e248,2005 Aug - PMID:15984913

  115. Ghedin E, Claverie JM (2005) Mimivirus relatives in the Sargasso sea. Virol J.2 ;:62,2005 Aug 16 - PMID:16105173

  116. Ogata H, Abergel C, Raoult D, Claverie JM (2005) Response to Comment on The 1.2-Megabase Genome Sequence of Mimivirus Science, Vol 308, Issue 5725, 1114 Science, Vol 308, Issue 5725, 1114,2005 Jun

  117. Claverie JM. (2005) Giant viruses in the oceans : the 4th Algal Virus Workshop. Virol J. ;2(1):52,2005 Jun 20 - PMID:15967028

  118. Ogata H, Suhre K, Claverie JM. (2005) Discovery of protein-coding palindromic repeats in Wolbachia. Trends Microbiol. ;13(6):253-5,2005 Jun - PMID:15936655

  119. Crapoulet N, Renesto P, Dumler JS, Suhre K, Ogata H, Claverie JM and Raoult D. (2005) Tropheryma whipplei genome at the beginning of the post-genomic era. Current genomics Vol. 6, No. 3, Pp. 195-205,2005

  120. Ogata H, Raoult D, Claverie JM. (2005) A new example of viral intein in Mimivirus. Virol J. ;2(1):8,2005 Feb 11 - PMID:15707490

  121. Claverie JM. (2005) French public research--saved? Science. ;307(5713):1169,2005 Feb 25 - PMID:15731408

  122. Abergel C, Chenivesse S, Byrne D, Suhre K, Arondel V, Claverie JM (2005) Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus. Acta Crystallogr Sect F Struct Biol Cryst Commun.61 ;Pt 2:212-5,2005 Feb 1 - PMID:16510997

  123. Renesto P, Ogata H, Audic S, Claverie JM, Raoult D. (2005) Some lessons from Rickettsia genomics. FEMS Microbiol Rev. ;29(1):99-117,2005 Jan - PMID:15652978

  124. Ogata H and Claverie JM (2005) Metagrowth: a new resource for the building of metabolic hypotheses in microbiology Nucleic Acids Res. ;33 Database Issue:D321-4,2005 Jan 1 - PMID:15608207

  125. Claverie JM (2005) Un virus encore plus géant que les autres. Médecine Science 21 : 15-16,2005

  126. Bidaut G, Suhre K, Claverie JM, Ochs MF. (2005) Bayesian decomposition analysis of bacterial phylogenomic profiles. Am J Pharmacogenomics ;5(1):63-70,2005 - PMID:15727490

  127. Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM. (2004) The 1.2-Mb Genome Sequence of Mimivirus. Science. 2004 Nov 19 ;306(5700):1344-50. Epub 2004 Oct 14. - PMID:15486256

  128. Claude JB, Suhre K, Notredame C, Claverie JM, Abergel C (2004) CaspR: a web-server for automated molecular replacement using homology modelling. Nucleic Acids Res. 2004 Jul 1 ;32(Web Server issue):W606-9. - PMID:15215460

  129. Enault F, Suhre K, Poirot O, Abergel C, Claverie JM (2004) Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis Nucleic Acids Res. 2004 Jul 1 ;32(Web Server issue):W336-9. - PMID:15215406

  130. Suhre, Claverie JM (2004) FusionDB: a database for in-depth analysis of prokaryotic gene fusion events. Nucleic Acids Res. 2004 Jan 1 ; 32 Database issue : D273-6. - PMID:14681411

  131. Raoult D, Ogata H, Audic S, Robert C, Suhre K, Drancourt M, Claverie JM (2003) Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome. Genome Res 2003 Aug ;13(8):1800-9. - PMID:12902375

  132. Renesto P, Crapoulet N, Ogata H, La Scola B, Vestris G, Claverie JM, Raoult D (2003) Genome-based design of a cell-free culture medium for Tropheryma whipplei. Lancet 2003 Aug 9 ;362(9382):447-9. - PMID:12927433

  133. Enault F, Suhre K, Poirot O, Abergel C, Claverie JM (2003) Phydbac (phylogenomic display of bacterial genes): An interactive resource for the annotation of bacterial genomes. Nucleic Acids Res 2003 Jul 1 ;31(13):3720-2. - PMID:12824402

  134. Suhre K, Claverie JM (2003) Genomic correlates of hyperthermostability, an update. J Biol Chem 2003 May 9 ;278(19):17198-202. - PMID:12600994

  135. Abergel C, Nitschke W, Malarte G, Bruschi M, Claverie JM, Giudici-Orticoni MT (2003) The structure of Acidithiobacillus ferrooxidans c(4)-cytochrome: a model for complex-induced electron transfer tuning. Structure (Camb) 2003 May ;11(5):547-55. - PMID:12737820

  136. La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie JM, Rao (2003) A giant virus in amoebae. Science 2003 Mar 28 ;299(5615):2033. - PMID:12663918

  137. Claverie JM, Ogata H (2003) The insertion of palindromic repeats in the evolution of proteins. Trends Biochem Sci 2003 Feb ;28(2):75-80. - PMID:12575994

  138. Megy K, Audic S, Claverie JM (2003) Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22. Genome Biol 2003 ;4(2):P1. - PMID:12620117

  139. Abergel C, Coutard B, Byrne D, Chenivesse S, Claude JB, Deregnaucourt C, Fricaux T, Gianesini-Boutreux C, Jeudy S, Lebrun R, Maza C, Notredame C, Poirot O, Suhre K, Varagnol M, Claverie JM. (2003) Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets. J Struct Funct Genomics. 2003 ;4(2-3):141-57. - PMID:14649299

  140. Claverie J.-M., Notredame C. (2003) Bioinformatics for Dummies John Wiley & Sons, New York

  141. Claverie JM, Monchois V, Audic S, Poirot O, Abergel C (2002) In Search of new anti-bacterial target genes: a comparative/structural genomics approach. Comb Chem High Throughput Screen 2002 Nov ;5(7):511-22. - PMID:12470264

  142. Megy K, Audic S, Claverie JM (2002) Heart-specific genes revealed by expressed sequence tag (EST) sampling. Genome Biol 2002 ;3(12):RESEARCH0074. - PMID:12537563

  143. Megy K, Audic S, Claverie JM (2002) Heart specific genes revealed by EST sampling. Genome Biol 2002 Aug 16 ;3(9):PREPRINT0008. - PMID:12225578

  144. Ogata H, Audic S, Abergel C, Fournier PE, Claverie JM (2002) Protein coding palindromes are a unique but recurrent feature in Rickettsia. Genome Res 2002 May ;12(5):808-16. - PMID:11997347

  145. Monchois V., Vincentelli R., Abergel C., Deregnaucourt C., Claverie J.-M. and Monchois V. (2002) Proficient target selection in structural genomic by In vitro protein expression on Gateway recombination plasmids. Cell-Free Translation Systems (Spirin Ed.) Springer Verlag : () 197- 202.

  146. Claverie JM, Abergel C, Audic S, Ogata H (2001) Recent advances in computational genomics. Pharmacogenomics 2001 Nov ;2(4):361-72. - PMID:11722286

  147. Ogata H, Audic S, Renesto-Audiffren P, Fournier PE, Barbe V, Samson D, Roux V, Cossart P, Weissenbach J, Claverie JM, Raoult D (2001) Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science 2001 Sep 14 ;293(5537):2093-8. - PMID:11557893

  148. Monchois V, Abergel C, Sturgis J, Jeudy S, Claverie JM (2001) Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme. J Biol Chem 2001 May 25 ;276(21):18437-41. - PMID:11278658

  149. Claverie JM (2001) [Transcriptome analysis in cancerology: bioinformatics aspects] Bull Cancer 2001 Mar ;88(3):269-76. - PMID:11313204

  150. Claverie JM (2001) Gene number. What if there are only 30,000 human genes? Science 2001 Feb 16 ;291(5507):1255-7. - PMID:11233450

  151. Claverie J.-M. (2001) Bioinformatics of transcriptome analysis in Cancer Biology. Bull. Cancer 88 : 269-276.

  152. Claverie J.-M. (2001) Le dècryptage du gènome humain : du fantasme ? la rèalitè mèdicale Concours Medical 123 : 429-429.

  153. Abergel C, Monchois V, Chenivesse S, Jeudy S, Claverie JM (2000) Crystallization and preliminary crystallographic study of b0220, an 'ORFan' protein of unknown function from Escherichia coli. Acta Crystallogr D Biol Crystallogr 2000 Dec ;56 Pt 12:1694-5. - PMID:11092949

  154. Matarazzo V, Tirard A, Renucci M, Botto JM, Bel MC, Claverie JM, Belaich A, Clement JL (2000) Identification of odorant receptors from the Alpine marmot (Marmota marmota). Cell Mol Biol (Noisy-le-grand) 2000 Nov ;46(7):1249-58. - PMID:11075954

  155. Cambillau C, Claverie JM (2000) Structural and genomic correlates of hyperthermostability. J Biol Chem 2000 Oct 20 ;275(42):32383-6. - PMID:10940293

  156. Ogata H, Audic S, Barbe V, Artiguenave F, Fournier PE, Raoult D, Claverie JM (2000) Selfish DNA in protein-coding genes of Rickettsia. Science 2000 Oct 13 ;290(5490):347-50. - PMID:11030655

  157. Claverie JM (2000) From bioinformatics to computational biology. Genome Res 2000 Sep ;10(9):1277-9. - PMID:10984445

  158. Alimi JP, Poirot O, Lopez F, Claverie JM (2000) Reverse transcriptase-polymerase chain reaction validation of 25 orphan genes from Escherichia coli K-12 MG1655. Genome Res 2000 Jul ;10(7):959-66. - PMID:10899145

  159. Beaudoing E, Freier S, Wyatt JR, Claverie JM, Gautheret D (2000) Patterns of variant polyadenylation signal usage in human genes. Genome Res 2000 Jul ;10(7):1001-10. - PMID:10899149

  160. Claverie JM (2000) Do we need a huge new centre to annotate the human genome? Nature 2000 Jan 6 ;403(6765):12. - PMID:10638729

  161. Ewing RM, Claverie JM (2000) EST databases as multi-conditional gene expression datasets. Pac Symp Biocomput 2000 ;:430-42. - PMID:10902191

  162. Ewing R, Poirot O, Claverie JM (2000) Comparative analysis of the Arabidopsis and rice expressed sequence tag (EST) sets. In Silico Biol 1999-2000 ;1(4):197-213. - PMID:11479934

  163. BenKahla A., Robertson D.L., Beaudoing E., Claverie J.-M. (2000) The Detection of Putative Recombinant Sequence Using BLAST. Proceedings of the German Conference on Bioinformatics. : 3- 9.

  164. Abergel C, Bouveret E, Claverie JM, Brown K, Rigal A, Lazdunski C, Benedetti H (1999) Structure of the Escherichia coli TolB protein determined by MAD methods at 1.95 A resolution. Structure Fold Des 1999 Oct 15 ;7(10):1291-300. - PMID:10545334

  165. Ewing RM, Kahla AB, Poirot O, Lopez F, Audic S, Claverie JM. (1999) Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res. 1999 Oct ;9(10):950-9. - PMID:10523523

  166. Claverie JM (1999) Computational methods for the identification of differential and coordinated gene expression. Hum Mol Genet 1999 ;8(10):1821-32. - PMID:10469833

  167. Abergel C, Robertson DL, Claverie JM (1999) Hidden dUTPase sequence in human immunodeficiency virus type 1 gp120. J Virol 1999 Jan ;73(1):751-3. - PMID:9847382

  168. Claverie J.-M., Lopez F. and Abergel C (1999) A New Strategy and Software System for the Design of Functional Signatures in Protein Sequences, in Perspective in Structural Biology. Indian Acad. Sciences and the Universities Press,Hyderabad, India.(M. Vijayan, ed.). Chap. 51 : () 680- 700.

  169. Abergel C, Chavrier P, Claverie JM (1998) Triple association of CDC25-, Dbl- and Sec7-related domains in mammalian guanine-nucleotide-exchange factors. Trends Biochem Sci 1998 Dec ;23(12):472-3. - PMID:9868368

  170. Audic S, Claverie JM (1998) Self-identification of protein-coding regions in microbial genomes. Proc Natl Acad Sci U S A 1998 Aug 18 ;95(17):10026-31. - PMID:9707594

  171. Claverie JM (1998) Computational methods for exon detection. Mol Biotechnol 1998 Aug ;10(1):27-48. - PMID:9779421

  172. Gapin L, Fukui Y, Kanellopoulos J, Sano T, Casrouge A, Malier V, Beaudoing E, Gautheret D, Claverie JM, Sasazuki T, Kourilsky P (1998) Quantitative analysis of the T cell repertoire selected by a single peptide-major histocompatibility complex. J Exp Med 1998 Jun 1 ;187(11):1871-83. - PMID:9607927

  173. Gautheret D, Poirot O, Lopez F, Audic S, Claverie JM (1998) Alternate polyadenylation in human mRNAs: a large-scale analysis by EST clustering. Genome Res 1998 May ;8(5):524-30. - PMID:9582195

  174. Audic S, Claverie JM (1998) Visualizing the competitive recognition of TATA-boxes in vertebrate promoters. Trends Genet 1998 Jan ;14(1):10-1. - PMID:9448460

  175. Abergel C, Rigal A, Chenivesse S, Lazdunski C, Claverie JM, Bouveret E, Benedetti H (1998) Crystallization and preliminary crystallographic study of a component of the Escherichia coli tol system: TolB. Acta Crystallogr D Biol Crystallogr 1998 Jan 1 ;54 ( Pt 1):102-4. - PMID:9761825

  176. Audic S, Lopez F, Claverie JM, Poirot O, Abergel C (1997) SAmBA: an interactive software for optimizing the design of biological macromolecules crystallization experiments. Proteins 1997 Oct ;29(2):252-7. - PMID:9329089

  177. Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 1997 Oct ;7(10):986-95. - PMID:9331369

  178. Claverie JM (1997) Exon detection by similarity searches. Methods Mol Biol 1997 ;68:283-313. - PMID:9055264

  179. Claverie JM (1997) Computational methods for the identification of genes in vertebrate genomic sequences. Hum Mol Genet 1997 ;6(10):1735-44. - PMID:9300666

  180. Claverie JM, Poirot O, Lopez F (1997) The difficulty of identifying genes in anonymous vertebrate sequences. Comput Chem 1997 ;21(4):203-14. - PMID:9415985

  181. Audic S, Claverie JM (1997) Detection of eukaryotic promoters using Markov transition matrices. Comput Chem 1997 ;21(4):223-7. - PMID:9440929

  182. Claverie JM, Audic S (1996) The statistical significance of nucleotide position-weight matrix matches. Comput Appl Biosci 1996 Oct ;12(5):431-9. - PMID:8996792

  183. Claverie JM (1996) Effective large-scale sequence similarity searches. Methods Enzymol 1996 ;266:212-27. - PMID:8743687

  184. Vaslin B, Claverie JM, Benveniste O, Barre-Sinoussi FC, Dormont D (1994) Nef and Gag synthetic peptide priming of antibody responses to HIV type 1 antigens in mice and primates. AIDS Res Hum Retroviruses 1994 Oct ;10(10):1241-50. - PMID:7531460

  185. Claverie JM (1994) A streamlined random sequencing strategy for finding coding exons. Genomics 1994 Oct ;23(3):575-81. - PMID:7851885

  186. Claverie JM, Makalowski W (1994) Alu alert. Nature 1994 Oct 27 ;371(6500):752. - PMID:7935834

  187. Claverie JM (1994) Some useful statistical properties of position-weight matrices. Comput Chem 1994 Sep ;18(3):287-94. - PMID:7952899

  188. Claverie JM (1993) Detecting frame shifts by amino acid sequence comparison. J Mol Biol 1993 Dec 20 ;234(4):1140-57. - PMID:7903399

  189. Majlessi L, Roth C, Benaroch P, Claverie JM, Kourilsky P, Bordenave G (1993) Identification of T cell peptides from C gamma 2ab involved in IgG2ab T cell-induced allotypic suppression. Relationship with the MHC haplotype of the suppressor T cell-donor Igha mice. J Immunol 1993 Aug 1 ;151(3):1263-72. - PMID:8335928

  190. Claverie JM (1993) Database of ancient sequences. Nature 1993 Jul 1 ;364(6432):19-20. - PMID:8316293

  191. Green P, Lipman D, Hillier L, Waterston R, States D, Claverie JM (1993) Ancient conserved regions in new gene sequences and the protein databases. Science 1993 Mar 19 ;259(5102):1711-6. - PMID:8456298

  192. Iris FJ, Bougueleret L, Prieur S, Caterina D, Primas G, Perrot V, Jurka J, Rodriguez-Tome P, Claverie JM, Dausset J, et al. (1993) Dense Alu clustering and a potential new member of the NF kappa B family within a 90 kilobase HLA class III segment. Nat Genet 1993 Feb ;3(2):137-45. - PMID:8499947

  193. Claverie JM, Hardelin JP, Legouis R, Levilliers J, Bougueleret L, Mattei MG, Petit C (1993) Characterization and chromosomal assignment of a human cDNA encoding a protein related to the murine 102-kDa cadherin-associated protein (alpha-catenin). Genomics 1993 Jan ;15(1):13-20. - PMID:8432524

  194. Behr C, Sarthou JL, Rogier C, Trape JF, Dat MH, Michel JC, Aribot G, Dieye A, Claverie JM, Druihle P, et al. (1992) Antibodies and reactive T cells against the malaria heat-shock protein Pf72/Hsp70-1 and derived peptides in individuals continuously exposed to Plasmodium falciparum. J Immunol 1992 Nov 15 ;149(10):3321-30. - PMID:1431109

  195. Prabhu VV, Claverie JM (1992) Correlations in intronless DNA. Nature 1992 Oct 29 ;359(6398):782. - PMID:1436053

  196. Claverie JM (1992) Identifying coding exons by similarity search: alu-derived and other potentially misleading protein sequences. Genomics 1992 Apr ;12(4):838-41. - PMID:1572661

  197. Sette A, Vitiello A, Farness P, Furze J, Sidney J, Claverie JM, Grey HM, Chesnut R (1991) Random association between the peptide repertoire of A2.1 class I and several different DR class II molecules. J Immunol 1991 Dec 1 ;147(11):3893-900. - PMID:1658152

  198. Abergel C, Claverie JM (1991) A strong propensity toward loop formation characterizes the expressed reading frames of the D segments at the Ig H and T cell receptor loci. Eur J Immunol 1991 Dec ;21(12):3021-5. - PMID:1660812

  199. Legouis R, Hardelin JP, Levilliers J, Claverie JM, Compain S, Wunderle V, Millasseau P, Le Paslier D, Cohen D, Caterina D, et al. (1991) The candidate gene for the X-linked Kallmann syndrome encodes a protein related to adhesion molecules. Cell 1991 Oct 18 ;67(2):423-35. - PMID:1913827

  200. Prochnicka-Chalufour A, Casanova JL, Avrameas S, Claverie JM, Kourilsky P (1991) Biased amino acid distributions in regions of the T cell receptors and MHC molecules potentially involved in their association. Int Immunol 1991 Sep ;3(9):853-64. - PMID:1931813

  201. Claverie JM, Sauvaget I (1991) WOBB.C: a portable software package for defining and searching ambiguous sequence patterns. Protein Seq Data Anal 1991 Aug ;4(2):119-21. - PMID:1946329

  202. Haas G, David R, Frank R, Gausepohl H, Devaux C, Claverie JM, Pierres M (1991) Identification of a major human immunodeficiency virus-1 reverse transcriptase epitope recognized by mouse CD4+ T lymphocytes. Eur J Immunol 1991 Jun ;21(6):1371-7. - PMID:1710563

  203. Claverie JM, Daulmerie C (1991) Smoothing profiles with sliding windows: better to wear a hat! Comput Appl Biosci 1991 Jan ;7(1):113-5. - PMID:2004269

  204. Maschat F, Dubertret ML, Therond P, Claverie JM, Lepesant JA (1990) Structure of the ecdysone-inducible P1 gene of Drosophila melanogaster. J Mol Biol 1990 Jul 20 ;214(2):359-72. - PMID:1696317

  205. Claverie JM (1990) Protein instruction. Nature 1990 May 10 ;345(6271):121-2. - PMID:2186280

  206. Claverie JM, Sauvaget I, Bougueleret L (1990) K-tuple frequency analysis: from intron/exon discrimination to T-cell epitope mapping. Methods Enzymol 1990 ;183:237-52. - PMID:1690334

  207. Abergel C, Loret E, Claverie JM (1989) Conformational analysis of T immunogenic peptides by circular dichroism spectroscopy. Eur J Immunol 1989 Oct ;19(10):1969-72. - PMID:2511030

  208. Kourilsky P, Claverie JM (1989) MHC restriction, alloreactivity, and thymic education: a common link? Cell 1989 Feb 10 ;56(3):327-9. - PMID:2492449

  209. Prochnicka-Chalufour A, Casanova JL, Kourilsky P, Claverie JM (1989) Extensive structural homology between H-2 K/D/L antigens and non-polymorphic class I Qa, Tla and 37 molecules suggests they may act as peptide carriers. Res Immunol 1989 Feb ;140(2):133-44. - PMID:2740613

  210. Kourilsky P, Claverie JM (1989) MHC-antigen interaction: what does the T cell receptor see? Adv Immunol 1989 ;45:107-93. - PMID:2665438

  211. Claverie JM, Prochnicka-Chalufour A, Bougueleret L (1989) Implications of a Fab-like structure for the T-cell receptor. Immunol Today 1989 Jan ;10(1):10-4. - PMID:2665768

  212. Kourilsky P, Claverie JM, Prochnicka-Chalufour A, Spetz-Hagberg AL, Larsson-Sciard EL (1989) How important is the direct recognition of polymorphic MHC residues by TCR in the generation of the T-cell repertoire? Cold Spring Harb Symp Quant Biol 1989 ;54 Pt 1:93-103. - PMID:2700950

  213. Claverie JM, Kourilsky P, Langlade-Demoyen P, Chalufour-Prochnicka A, Dadaglio G, Tekaia F, Plata F, Bougueleret L (1988) T-immunogenic peptides are constituted of rare sequence patterns. Use in the identification of T epitopes in the human immunodeficiency virus gag protein. Eur J Immunol 1988 Oct ;18(10):1547-53. - PMID:2461306

  214. Bougueleret L, Tekaia F, Sauvaget I, Claverie JM (1988) Objective comparison of exon and intron sequences by means of 2-dimensional data analysis methods. Nucleic Acids Res 1988 Mar 11 ;16(5):1729-38. - PMID:3353220

  215. Bairoch A, Claverie JM (1988) Sequence patterns in protein kinases. Nature 1988 Jan 7 ;331(6151):22. - PMID:3340146

  216. Chalufour A, Bougueleret L, Claverie JM, Kourilsky P (1987) Rare sequence motifs are common constituents of hypervariable antibody regions. Ann Inst Pasteur Immunol 1987 Sep-Oct ;138(5):671-85. - PMID:3125843

  217. Tekaia F, Derlot E, Claverie JM, Courvalin P (1987) [Quality control of multicenter evaluation studies of the in vitro activity of antibiotics] Pathol Biol (Paris) 1987 Jun ;35(5 Pt 2):687-91. - PMID:3309798

  218. Kourilsky P, Chaouat G, Rabourdin-Combe C, Claverie JM (1987) Working principles in the immune system implied by the peptidic self model. Proc Natl Acad Sci U S A 1987 May ;84(10):3400-4. - PMID:3494999

  219. Belhumeur P, Paterno GD, Boileau G, Claverie JM, Skup D (1987) Isolation and characterisation of a murine cDNA clone highly homologous to the yeast L29 ribosomal protein gene. Nucleic Acids Res 1987 Feb 11 ;15(3):1019-29. - PMID:2434927

  220. Bougueleret L, Claverie JM (1987) Variability analysis of the human and mouse T-cell receptor beta chains. Immunogenetics 1987 ;26(4-5):304-8. - PMID:3653942

  221. Claverie JM, Kourilsky P (1986) The peptidic self model: a reassessment of the role of the major histocompatibility complex molecules in the restriction of the T-cell response. Ann Inst Pasteur Immunol 1986 Nov-Dec ;137D(3):425-42. - PMID:3103648

  222. Bougueleret L, Claverie JM (1986) Relevance of the lariat model to the splicing of the H-2 gene family. Eur J Biochem 1986 Oct 15 ;160(2):279-84. - PMID:3769928

  223. Claverie JM, Bricault L (1986) PseqIP: a nonredundant and exhaustive protein sequence data bank generated from 4 major existing collections. Proteins 1986 Sep ;1(1):60-5. - PMID:3449852

  224. Kourilsky P, Claverie JM (1986) The peptidic self model: a hypothesis on the molecular nature of the immunological self. Ann Inst Pasteur Immunol 1986 Jul-Aug ;137D(1):3-21. - PMID:3489434

  225. Claverie JM, Bougueleret L, Ooi T (1986) [Neg-entropy and local information content: a new approach to the analysis of nucleotide and amino-acid sequences] Tanpakushitsu Kakusan Koso 1986 Jun ;(29 Suppl):111-22. - PMID:3534948

  226. Claverie JM, Bougueleret L (1986) Heuristic informational analysis of sequences. Nucleic Acids Res 1986 Jan 10 ;14(1):179-96. - PMID:3753763

  227. Claverie JM, Sauvaget I (1985) A new protein sequence data bank. Nature 1985 Nov 7-13 ;318(6041):19. - PMID:4058589

  228. Claverie JM, Sauvaget I, Bougueleret L (1985) Computer generation and statistical analysis of a data bank of protein sequences translated from GenBank. Biochimie 1985 May ;67(5):437-43. - PMID:3927990

  229. Claverie JM, Sauvaget I (1985) Assessing the biological significance of primary structure consensus patterns using sequence databanks. I. Heat-shock and glucocorticoid control elements in eukaryotic promoters. Comput Appl Biosci 1985 ;1(2):95-104. - PMID:3880336

  230. Debuire B, Henry C, Bernissa M, Biserte G, Claverie JM, Saule S, Martin P, Stehelin D (1984) Sequencing the erbA gene of avian erythroblastosis virus reveals a new type of oncogene. Science 1984 Jun 29 ;224(4656):1456-9. - PMID:6328658

  231. Claverie JM (1984) A common philosophy and FORTRAN 77 software package for implementing and searching sequence databases. Nucleic Acids Res 1984 Jan 11 ;12(1 Pt 1):397-407. - PMID:6546424

  232. Claverie JM, Cohn M (1983) T lymphoma variants with specifically altered growth in semi-solid media. Int J Cancer 1983 Nov 15 ;32(5):641-3. - PMID:6642758

  233. Claverie JM (1980) A new simple method to determine the diffusion coefficient from active enzyme centrifugation experiments. Arch Biochem Biophys 1980 Jun ;202(1):160-7. - PMID:7396532

  234. Claverie JM, de Souza AC, Thirion JP (1979) Mutations of Chinese hamster somatic cells from 2-deoxygalactose sensitivity to resistance. Genetics 1979 Jun ;92(2):563-72. - PMID:488705

  235. Huet M, Claverie JM (1978) Sedimentation studies of the reversible dimer-tetramer transition kinetics of concanavalin A. Biochemistry 1978 Jan 24 ;17(2):236-41. - PMID:619990

  236. Delobbe A, Chalumeau H, Claverie JM, Gay P (1976) Phosphorylation of intracellular fructose in Bacillus subtilis mediated by phosphoenolpyruvate-1-fructose phosphotransferase. Eur J Biochem 1976 Jul 15 ;66(3):485-91. - PMID:821752

  237. Claverie JM (1976) Sedimentation of generalized systems of interacting particles. III. Concentration-dependent sedimentation and extension to other transport methods. Biopolymers 1976 May ;15(5):843-57. - PMID:9925410

  238. Claverie JM, Dreux H, Cohen R (1975) Sedimentation of generalized systems of interacting particles. I. Solution of systems of complete Lamm equations. Biopolymers 1975 Aug ;14(8):1685-1700. - PMID:1156660

  239. Cohen R, Claverie JM (1975) Sedimentation of generalized systems of interacting particles. II. Active enzyme centrifugation--theory and extensions of its validity range. Biopolymers 1975 Aug ;14(8):1701-16. - PMID:1156661

  240. Claverie JM, Mattioda G (1973) [Research on anti-inflammatory indazoles] Farmaco [Sci] 1973 Jul ;28(7):523-7. - PMID:4718399

  241. Claverie JM (0000) cc dd,2012 May