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Jean-Michel Claverie

PU-PH, Directeur du laboratoire

Tel : 04 91 82 54 20


Jean-Michel Claverie is Professor of Medical Genomics and Bioinformatics at the University of Mediterranée School of Medicine, Director of the Mediterranean Institute of Microbiology, and head of the Structural and Genomic Information Laboratory, a CNRS unit (UPR2589) in Marseille.

His main current research interest is the evolutionary origin and the biology of the paradoxical giant DNA viruses such as Mimivirus and the biodiversity of the marine microbial world (protists, bacteria and viruses). The laboratory’s approaches include structural, molecular, and cellular biology, high throughput genome and transcriptome sequencing, large-scale comparative genomics, and the development of relevant bioinformatic methods for sequence analysis and datamining.

He also has a strong interest in the application of high throughput new generation sequencing genomic approaches in the biomedical and biotechnological fields.

He is the co-author of more than 160 scientific publications in international journals and of the best-seller book "Bioinformatics for Dummies".

  1. Doutre G, Philippe N, Abergel C, Claverie JM (2014) Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to the virus fitness. J Virol. ; :,2014 Oct 1 - PMID:25275139

  2. Claverie JM, Abergel C (2014) From extraordinary endocytobionts to Pandoraviruses. Comment on Scheid et al.: Some secrets are revealed: Parasitic keratitis amoebae as vectors of the scarcely described pandoraviruses to humans. Parasitol Res. ; :,2014 Aug 19 - PMID:25134945

  3. Mozar M, Claverie JM (2014) Expanding the Mimiviridae family using asparagine synthase as a sequence bait. Virology. ; :,2014 Jun 4 - PMID:24908633

  4. Claverie J-M, Abergel C (2014) Paléovirologie : Pithovirus : un virus géant venu du fond des âges Biofutur 33 (352), 50-51,2014 Mar 4

  5. Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Couté Y, Rivkina E, Abergel C, Claverie JM (2014) Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci U S A. ;111 (11) : 4274–4279,2014 Mar 3 - PMID:24591590

  6. Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R (2014) Patterns of Rare and Abundant Marine Microbial Eukaryotes. Curr Biol. ; :,2014 Apr 2 - PMID:24704080

  7. Abergel C, Claverie JM (2014) Pithovirus sibericum:awakening of a giant virus of more than 30 000 years. Med Sci (Paris).30 ;3:329-31,2014 Mar  - PMID:24685225

  8. Claverie J.-M. & Abergel C (2013) Les virus sont-ils vraiment des virus ? Virologie 17 : 217-228,2013 Dec 1

  9. Claverie JM (2013) Giant virus in the sea: Extending the realm of Megaviridae to Viridiplantae. Commun Integr Biol.6 ;6:e25685,2013 Nov 1 - PMID:24563700

  10. Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C (2013) Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science.341 ;6143:281-6,2013 Jul 19 - PMID:23869018

  11. Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G, Dacks JB, Delwiche CF, Dyhrman ST, Glockner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV, Allen AE, Bidle K, Borodovsky M, Bowler C, Brownlee C, Cock JM, Elias M, Gladyshev VN, Groth M, Guda C, Hadaegh A, Iglesias-Rodriguez MD, Jenkins J, Jones BM, Lawson T, Leese F, Lindquist E, Lobanov A, Lomsadze A, Malik SB, Marsh ME, Mackinder L, Mock T, Mueller-Roeber B, Pagarete A, Parker M, Probert I, Quesneville H, Raines C, Rensing SA, Riano-Pachon DM, Richier S, Rokitta S, Shiraiwa Y, Soanes DM, van der Giezen M, Wahlund TM, Williams B, Wilson W, Wolfe G, Wurch LL (2013) Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature.499 ;7457:209-13,2013 Jul 11 - PMID:23760476

  12. Santini S, Jeudy S, Bartoli J, Poirot O, Lescot M, Abergel C, Barbe V, Wommack KE, Noordeloos AA, Brussaard CP, Claverie JM (2013) Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes. Proc Natl Acad Sci U S A.110 ;26:10800-5,2013 Jun 25 - PMID:23754393

  13. Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H (2013) Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J. ; :,2013 Apr 11 - PMID:23575371

  14. Jeanniard A, Dunigan DD, Gurnon JR, Agarkova IV, Kang M, Vitek J, Duncan G, McClung OW, Larsen M, Claverie JM, Van Etten JL, Blanc G (2013) Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses. BMC Genomics.14 ;1:158,2013 Mar 8 - PMID:23497343

  15. Claverie JM, Abergel C (2013) Open questions about giant viruses. Adv Virus Res.85 ;:25-56,2013  - PMID:23439023

  16. Jeudy S, Abergel C, Claverie JM, Legendre M (2012) Translation in giant viruses: a unique mixture of bacterial and eukaryotic termination schemes. PLoS Genet.8 ;12:e1003122,2012 Dec  - PMID:23271980

  17. Claverie JM, Abergel C (2012) The Concept of Virus in the Post-Megavirus Era Springer, Guenther Witzany Editor, Viruses : Essential Agents of Life : 187-202,2012 November

  18. Claverie JM, Abergel C (2012) Les virus géants, vestiges d'organismes cellulaires. Pour la Science 415 : 30-33,2012 May

  19. Piacente F, Marin M, Molinaro A, De Castro C, Seltzer V, Salis A, Damonte G, Bernardi C, Claverie JM, Abergel C, Tonetti M (2012) Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-D-glucose (Viosamine). J Biol Chem.287 ;5:3009-18,2012 Jan 27 - PMID:22157758

  20. Blanc G, Agarkova I, Grimwood J, Kuo A, Brueggeman A, Dunigan DD, Gurnon J, Ladunga I, Lindquist E, Lucas S, Pangilinan J, Proschold T, Salamov A, Schmutz J, Weeks D, Yamada T, Lomsadze A, Borodovsky M, Claverie JM, Grigoriev IV, Van Etten JL (2012) The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol.13 ;5:R39,2012 May 25 - PMID:22630137

  21. Legendre M, Arslan D, Abergel C, Claverie JM (2012) Genomics of Megavirus and the elusive fourth domain of Life. Commun Integr Biol.5 ;1:102-6,2012 Jan 1 - PMID:22482024

  22. Claverie JM (2012) Review of the book: "Life from an RNA world: the ancestor within" by M Yarus. Harvard Univ. Press. The Quarterly Review of Biology 87 : 66-67,2012 Jan

  23. Claverie JM, Abergel C (2011) Megavirus réécrit l'évolution des virus à ADN. Biofutur 327 (Décembre, p11),2011

  24. Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P (2011) A Holistic Approach to Marine Eco-Systems Biology. PLoS Biol.9 ;10:e1001177,2011 Oct  - PMID:22028628

  25. Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM (2011) Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci U S A.108 ;42:17486-91,2011 Oct 18 - PMID:21987820

  26. Yoshida T, Claverie JM, Ogata H (2011) Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids. Virol J.8 ;1:427,2011 Sep 7 - PMID:21899737

  27. Ogata H, Ray J, Toyoda K, Sandaa RA, Nagasaki K, Bratbak G, Claverie JM (2011) Two new subfamilies of DNA mismatch repair proteins (MutS) specifically abundant in the marine environment. ISME J.5 ;7:1143-51,2011 Jul  - PMID:21248859

  28. Audic S, Lescot M, Claverie JM, Cloeckaert A, Zygmunt MS (2011) The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella. BMC Evol Biol.11 ;1:200,2011 Jul 11 - PMID:21745361

  29. Legendre M, Santini S, Rico A, Abergel C, Claverie JM (2011) Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing. Virol J.8 ;1:99,2011 Mar 4 - PMID:21375749

  30. Seibert MM, Ekeberg T, Maia FR, Svenda M, Andreasson J, Jonsson O, Odic D, Iwan B, Rocker A, Westphal D, Hantke M, Deponte DP, Barty A, Schulz J, Gumprecht L, Coppola N, Aquila A, Liang M, White TA, Martin A, Caleman C, Stern S, Abergel C, Seltzer V, Claverie JM, Bostedt C, Bozek JD, Boutet S, Miahnahri AA, Messerschmidt M, Krzywinski J, Williams G, Hodgson KO, Bogan MJ, Hampton CY, Sierra RG, Starodub D, Andersson I, Bajt S, Barthelmess M, Spence JC, Fromme P, Weierstall U, Kirian R, Hunter M, Doak RB, Marchesini S, Hau-Riege SP, Frank M, Shoeman RL, Lomb L, Epp SW, Hartmann R, Rolles D, Rudenko A, Schmidt C, Foucar L, Kimmel N, Holl P, Rudek B, Erk B, Homke A, Reich C, Pietschner D, Weidenspointner G, Struder L, Hauser G, Gorke H, Ullrich J, Schlichting I, Herrmann S, Schaller G, Schopper F, Soltau H, Kuhnel KU, Andritschke R, Schroter CD, Krasniqi F, Bott M, Schorb S, Rupp D, Adolph M, Gorkhover T, Hirsemann H, Potdevin G, Graafsma H, Nilsson B, Chapman HN, Hajdu J (2011) Single mimivirus particles intercepted and imaged with an X-ray laser. Nature.470 ;7332:78-81,2011 Feb 3 - PMID:21293374

  31. Claverie JM (2011) Radiographie ... biologique. Biofutur 319, 10,2011

  32. Santini S, Claverie JM, Mouz N, Rousselle T, Maza C, Monchois V, Abergel C (2011) The Conserved Candida albicans CA3427 Gene Product Defines a New Family of Proteins Exhibiting the Generic Periplasmic Binding Protein Structural Fold. PLoS One.6 ;4:e18528,2011  - PMID:21494601

  33. Claverie JM, Abergel C (2011) Family Mimiviridae. Virus Taxonomy, ninth report of the International Committee on Taxonomy of Viruses (ICTV) , Elsevier, Academic Press, ISBN : 978-0-12-384684-6. pp223-228,2011

  34. Yoon CH, Schwander P, Abergel C, Andersson I, Andreasson J, Aquila A, Bajt S, Barthelmess M, Barty A, Bogan M, Bostedt C, Bozek J, Chapman H, Claverie JM, Coppola N, DePonte D,Ekeberg T, Epp S, Erk B, Fleckenstein H, Foucar L, Graafsma H, Gumprecht L, Hajdu J, Hampton C, Hartmann A, Hartmann E, Hartmann R, Hauser G, Hirsemann H, Holl P, Kassemeyer S, Kimmel N, Kiskinova M, Liang M, Duane Loh N, Lomb L, Maia F, Martin A, Nass K, Pedersoli E, Reich C, Rolles D, Rudek B, Rudenko A, Schlichting I, Schulz J, Seibert M, Seltzer V, Shoeman R, Sierra R, Soltau H, Starodub D, Steinbrener J, Stier G, Strüder L, Svenda M, Ullrich J, Weidenspointner G, White T, Wunderer C, and Ourmazd A (2011) Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering Optics Express, Vol. 19, Issue 17, pp. 16542-16549,2011

  35. Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, Salamov A, Terry A, Yamada T, Dunigan DD, Grigoriev IV, Claverie JM, Van Etten JL (2010) The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell.22 ;9:2943-55,2010 Sep  - PMID:20852019

  36. Legendre M, Audic S, Poirot O, Hingamp P, Seltzer V, Byrne D, Lartigue A, Lescot M, Bernadac A, Poulain J, Abergel C, Claverie JM (2010) mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus. Genome Res.20 ;5:664-74,2010 May - PMID:20360389

  37. Toulza E, Shin MS, Blanc G, Audic S, Laabir M, Collos Y, Claverie JM, Grzebyk D (2010) Gene expression in proliferating cells of the dinoflagellate Alexandrium catenella (Dinophyceae). Appl Environ Microbiol.76 ;13:4521-9,2010 Jul - PMID:20435767

  38. Dereeper A, Audic S, Claverie JM, Blanc G (2010) BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol.10 ;1:8,2010 Jan 12 - PMID:20067610

  39. Claverie JM, Abergel C (2010) Mimivirus: the emerging paradox of quasi-autonomous viruses. Trends Genet. ;pp. 431-437 :,2010 Aug 7 - PMID:20696492

  40. Claverie JM, Aurias A (2010) Mimivirus, un géant parmi les microbes. Biofutur 309 : 46-48.(en Français),2010

  41. Ogata H., Monier A., Claverie JM (2010) Distribution of Giant Viruses in Marine Environments. Global Change : Mankind-Marine Environment Interactions - Proceedings of the 13th French-Japanese Oceanography Symposium, Ceccaldi H.-J. et al. eds., Springer Science/Business Media B.V. ,2010

  42. Audic S, Lescot M, Claverie JM, Scholz HC (2009) Brucella microti: the genome sequence of an emerging pathogen. BMC Genomics.10 ;1:352,2009 Aug 4 - PMID:19653890

  43. Claverie JM, Ogata H (2009) Ten good reasons not to exclude giruses from the evolutionary picture. Nat Rev Microbiol.7 ;8:615 ; author reply 615,2009 Aug  - PMID:19561626

  44. Ogata H, Toyoda K, Tomaru Y, Nakayama N, Shirai Y, Claverie JM, Nagasaki K (2009) Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus. Virol J.6 ;1:178,2009 Oct 27 - PMID:19860921

  45. Monier A, Pagarete A, de Vargas C, Allen MJ, Read B, Claverie JM, Ogata H (2009) Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus. Genome Res.19 ;8:1441-9,2009 Aug - PMID:19451591

  46. Claverie JM, Grzela R, Lartigue A, Bernadac A, Nitsche S, Vacelet J, Ogata H, Abergel C (2009) Mimivirus&Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges. J Invertebr Pathol.101 ;3:172-80,2009 Jul - PMID:19457438

  47. von Dassow P, Ogata H, Probert I, Wincker P, Da Silva C, Audic S, Claverie JM, de Vargas C (2009) Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell. Genome Biol.10 ;10:R114,2009 Oct 15 - PMID:19832986

  48. Jeudy S, Lartigue A, Claverie JM, Abergel C (2009) Dissecting the unique nucleotide specificity of Mimivirus nucleoside diphosphate kinase. J Virol.83 ;14:7142-50,2009 Jul - PMID:19439473

  49. Claverie JM, Abergel C (2009) Mimivirus and its Virophage. Annu Rev Genet.43 ;:49-66,2009 - PMID:19653859

  50. Claverie JM, Abergel C, Ogata H (2009) Mimivirus. Curr Top Microbiol Immunol.328 ;:89-121,2009  - PMID:19216436

  51. Byrne D, Grzela R, Lartigue A, Audic S, Chenivesse S, Encinas S, Claverie JM, Abergel C (2009) The polyadenylation site of Mimivirus transcripts obeys a stringent hairpin rule. Genome Res.19 ;7:1233-42,2009 Jul  - PMID:19403753

  52. Lescot M, Audic S, Robert C, Nguyen TT, Blanc G, Cutler SJ, Wincker P, Couloux A, Claverie JM, Raoult D, Drancourt M (2008) The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. PLoS Genet.4 ;9:e1000185,2008 Sep  - PMID:18787695

  53. Monier A, Claverie JM, Ogata H (2008) Taxonomic distribution of large DNA viruses in the sea. Genome Biol.9 ;7:R106,2008 Jul 3 - PMID:18598358

  54. Ogata H, Claverie JM (2008) Microbiology. How to infect a Mimivirus. Science.321 ;5894:1305-6,2008 Sep 5 - PMID:18772426

  55. Monier A, Larsen JB, Sandaa RA, Bratbak G, Claverie JM, Ogata H (2008) Marine mimivirus relatives are probably large algal viruses. Virol J.5 ;1:12,2008 Jan 23 - PMID:18215256

  56. Claverie JM (2008) Mimivirus. Encyclopedia of Virology, 5 vols. (B.W.J. Mahy and M.H.V. Van Regenmortel, Editors), pp. 311-319 Oxford : Elsevier ,2008

  57. Vallenet D, Nordmann P, Barbe V, Poirel L, Mangenot S, Bataille E, Dossat C, Gas S, Kreimeyer A, Lenoble P, Oztas S, Poulain J, Segurens B, Robert C, Abergel C, Claverie JM, Raoult D, Médigue C, Weissenbach J, Cruveiller S (2008) Comparative analysis of Acinetobacters: three genomes for three lifestyles. PLoS ONE.3 ;3:e1805,2008  - PMID:18350144

  58. Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (2008) robust phylogenetic analysis for the non-specialist. Nucleic Acids Res.36 ;Web Server issue:W465-9,2008 Jul 1 - PMID:18424797

  59. Santini S, Monchois V, Mouz N, Sigoillot C, Rousselle T, Claverie JM, Abergel C (2008) Structural characterization of CA1462, the Candida albicans thiamine pyrophosphokinase. BMC Struct Biol.8 ;:33,2008  - PMID:18652651

  60. Monier A, Claverie JM, Ogata H (2007) Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. BMC Genomics.8 ;1:456,2007 Dec 10 - PMID:18070355

  61. Blanc G, Ogata H, Robert C, Audic S, Claverie JM, Raoult D (2007) Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome. Genome Res.17 ;11:1657-64,2007 Nov - PMID:17916642

  62. Claverie JM (2007) La Bioinformatique. Les Techniques de l`Ingénieur - in press,2007

  63. Abergel C, Rudinger-Thirion J , Giegé R, Claverie JM (2007) Virus-Encoded Aminoacyl-tRNA Synthetases: Structural and Functional Characterization of Mimivirus TyrRS and MetRS. J Virol.81 ;22:12406-17,2007 Nov - PMID:17855524

  64. Ogata H, Claverie JM (2007) Unique genes in giant viruses: regular substitution pattern and anomalously short size. Genome Res.17 ;9:1353-61,2007 Sep - PMID:17652424

  65. Claverie JM, Notredame C (2007) Bioinformatics for Dummies, 2nd Edition. Wiley, 436p,2007

  66. Abergel C, Monchois V, Byrne D, Chenivesse S, Lembo F, Lazzaroni JC, Claverie JM (2007) Structure and evolution of the Ivy protein family, unexpected lysozyme inhibitors in Gram-negative bacteria. Proc Natl Acad Sci U S A.104 ;15:6394-9,2007 Apr 10 - PMID:17405861

  67. Audic S, Robert C, Campagna B, Parinello H, Claverie JM, Raoult D, Drancourt M (2007) Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria. PLoS Genet.3 ;8:e138,2007 Aug 24 - PMID:17722982

  68. Blanc G, Ogata H, Robert C, Audic S, Suhre K, Vestris G, Claverie JM, Raoult D (2007) Reductive Genome Evolution from the Mother of Rickettsia. PLoS Genet.3 ;1:e14,2007 Jan 19 - PMID:17238289

  69. Unneberg P, Claverie JM (2007) Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data. PLoS ONE.2 ;2:e254,2007 - PMID:17330142

  70. Abergel C , Blanc G , Monchois V, Renesto P, Sigoillot C , Ogata H, Raoult D, Claverie JM (2006) Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity. Mol Biol Evol.23 ;11:2112-22,2006 Nov - PMID:16891376

  71. Claverie JM (2006) Viruses take center stage in cellular evolution. Genome Biology, 7:110,2006

  72. Ogata H, {La Scola} B, Audic S, Renesto P, Blanc G, Robert C, Fournier PE, Claverie JM, Raoult D (2006) Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet.2 ;5:e76,2006 May - PMID:16703114

  73. Claverie JM, Ogata H, Audic S, Abergel C, Suhre K, Fournier PE (2006) Mimivirus and the emerging concept of "giant" virus. Virus Res.117 ;1:133-44,2006 Apr - PMID:16469402

  74. Benarroch D, Claverie JM, Raoult D, Shuman S (2006) Characterization of mimivirus DNA topoisomerase IB suggests horizontal gene transfer between eukaryal viruses and bacteria. J Virol.80 ;1:314-21,2006 Jan - PMID:16352556

  75. Fournier PE, Vallenet D, Barbe V, Audic S, Ogata H, Poirel L, Richet H, Robert C, Mangenot S, Abergel C, Nordmann P, Weissenbach J, Raoult D, Claverie JM (2006) Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet.2 ;1:e7,2006 Jan - PMID:16415984

  76. Jeudy S, Monchois V, Maza C, Claverie JM, Aberg C (2006) Crystal structure of Escherichia coli DkgA, a broad-specificity aldo-keto reductase. Proteins.62 ;1:302-7,2006 Jan 1 - PMID:16284956

  77. Jeudy S, Claverie JM, Abergel C (2006) The nucleoside diphosphate kinase from mimivirus: a peculiar affinity for deoxypyrimidine nucleotides. J Bioenerg Biomembr.38 ;3-4:247-54,2006 Aug  - PMID:16957983

  78. Bidaut G, Suhre K, Claverie JM, Ochs MF (2006) Determination of strongly overlapping signaling activity from microarray data. BMC Bioinformatics.7 ;:99,2006 - PMID:16507110

  79. Ogata H, Robert C, Audic S, Robineau S, Blanc G, Fournier PE, Renesto P, Claverie JM, Raoult D. (2005) Rickettsia felis, from Culture to Genome Sequencing. Ann N Y Acad Sci. ;1063:26-34,2005 Dec - PMID:16481487

  80. Suhre K, Audic S, Claverie JM (2005) Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes. Proc Natl Acad Sci U S A.102 ;41:14689-93,2005 Oct 11 - PMID:16203998

  81. Heritier C, Poirel L, Fournier PE, Claverie JM, Raoult D, Nordmann P. (2005) Characterization of the Naturally Occurring Oxacillinase of Acinetobacter baumannii. Antimicrob Agents Chemother. 49(10):4174-9,2005 Oct - PMID:16189095

  82. Claverie JM. (2005) Fewer genes, more noncoding RNA. Science. 309(5740):1529-30,2005 Sep 2 - PMID:16141064

  83. Ogata H, Renesto P, Audic S, Robert C, Blanc G, Fournier PE, Parinello H, Claverie JM, Raoult D (2005) The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol.3 ;8:e248,2005 Aug - PMID:15984913

  84. Ghedin E, Claverie JM (2005) Mimivirus relatives in the Sargasso sea. Virol J.2 ;:62,2005 Aug 16 - PMID:16105173

  85. Ogata H, Abergel C, Raoult D, Claverie JM (2005) Response to Comment on The 1.2-Megabase Genome Sequence of Mimivirus Science, Vol 308, Issue 5725, 1114 Science, Vol 308, Issue 5725, 1114,2005 Jun

  86. Claverie JM. (2005) Giant viruses in the oceans : the 4th Algal Virus Workshop. Virol J. ;2(1):52,2005 Jun 20 - PMID:15967028

  87. Ogata H, Suhre K, Claverie JM. (2005) Discovery of protein-coding palindromic repeats in Wolbachia. Trends Microbiol. ;13(6):253-5,2005 Jun - PMID:15936655

  88. Crapoulet N, Renesto P, Dumler JS, Suhre K, Ogata H, Claverie JM and Raoult D. (2005) Tropheryma whipplei genome at the beginning of the post-genomic era. Current genomics Vol. 6, No. 3, Pp. 195-205,2005

  89. Ogata H, Raoult D, Claverie JM. (2005) A new example of viral intein in Mimivirus. Virol J. ;2(1):8,2005 Feb 11 - PMID:15707490

  90. Claverie JM. (2005) French public research--saved? Science. ;307(5713):1169,2005 Feb 25 - PMID:15731408

  91. Abergel C, Chenivesse S, Byrne D, Suhre K, Arondel V, Claverie JM (2005) Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus. Acta Crystallogr Sect F Struct Biol Cryst Commun.61 ;Pt 2:212-5,2005 Feb 1 - PMID:16510997

  92. Renesto P, Ogata H, Audic S, Claverie JM, Raoult D. (2005) Some lessons from Rickettsia genomics. FEMS Microbiol Rev. ;29(1):99-117,2005 Jan - PMID:15652978

  93. Ogata H and Claverie JM (2005) Metagrowth: a new resource for the building of metabolic hypotheses in microbiology Nucleic Acids Res. ;33 Database Issue:D321-4,2005 Jan 1 - PMID:15608207

  94. Claverie JM (2005) Un virus encore plus géant que les autres. Médecine Science 21 : 15-16,2005

  95. Bidaut G, Suhre K, Claverie JM, Ochs MF. (2005) Bayesian decomposition analysis of bacterial phylogenomic profiles. Am J Pharmacogenomics ;5(1):63-70,2005 - PMID:15727490

  96. Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM. (2004) The 1.2-Mb Genome Sequence of Mimivirus. Science. 2004 Nov 19 ;306(5700):1344-50. Epub 2004 Oct 14. - PMID:15486256

  97. Claude JB, Suhre K, Notredame C, Claverie JM, Abergel C (2004) CaspR: a web-server for automated molecular replacement using homology modelling. Nucleic Acids Res. 2004 Jul 1 ;32(Web Server issue):W606-9. - PMID:15215460

  98. Enault F, Suhre K, Poirot O, Abergel C, Claverie JM (2004) Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis Nucleic Acids Res. 2004 Jul 1 ;32(Web Server issue):W336-9. - PMID:15215406

  99. Suhre, Claverie JM (2004) FusionDB: a database for in-depth analysis of prokaryotic gene fusion events. Nucleic Acids Res. 2004 Jan 1 ; 32 Database issue : D273-6. - PMID:14681411

  100. Raoult D, Ogata H, Audic S, Robert C, Suhre K, Drancourt M, Claverie JM (2003) Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome. Genome Res 2003 Aug ;13(8):1800-9. - PMID:12902375

  101. Renesto P, Crapoulet N, Ogata H, La Scola B, Vestris G, Claverie JM, Raoult D (2003) Genome-based design of a cell-free culture medium for Tropheryma whipplei. Lancet 2003 Aug 9 ;362(9382):447-9. - PMID:12927433

  102. Enault F, Suhre K, Poirot O, Abergel C, Claverie JM (2003) Phydbac (phylogenomic display of bacterial genes): An interactive resource for the annotation of bacterial genomes. Nucleic Acids Res 2003 Jul 1 ;31(13):3720-2. - PMID:12824402

  103. Suhre K, Claverie JM (2003) Genomic correlates of hyperthermostability, an update. J Biol Chem 2003 May 9 ;278(19):17198-202. - PMID:12600994

  104. Abergel C, Nitschke W, Malarte G, Bruschi M, Claverie JM, Giudici-Orticoni MT (2003) The structure of Acidithiobacillus ferrooxidans c(4)-cytochrome: a model for complex-induced electron transfer tuning. Structure (Camb) 2003 May ;11(5):547-55. - PMID:12737820

  105. La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie JM, Rao (2003) A giant virus in amoebae. Science 2003 Mar 28 ;299(5615):2033. - PMID:12663918

  106. Claverie JM, Ogata H (2003) The insertion of palindromic repeats in the evolution of proteins. Trends Biochem Sci 2003 Feb ;28(2):75-80. - PMID:12575994

  107. Megy K, Audic S, Claverie JM (2003) Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22. Genome Biol 2003 ;4(2):P1. - PMID:12620117

  108. Abergel C, Coutard B, Byrne D, Chenivesse S, Claude JB, Deregnaucourt C, Fricaux T, Gianesini-Boutreux C, Jeudy S, Lebrun R, Maza C, Notredame C, Poirot O, Suhre K, Varagnol M, Claverie JM. (2003) Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets. J Struct Funct Genomics. 2003 ;4(2-3):141-57. - PMID:14649299

  109. Claverie J.-M., Notredame C. (2003) Bioinformatics for Dummies John Wiley & Sons, New York

  110. Claverie JM, Monchois V, Audic S, Poirot O, Abergel C (2002) In Search of new anti-bacterial target genes: a comparative/structural genomics approach. Comb Chem High Throughput Screen 2002 Nov ;5(7):511-22. - PMID:12470264

  111. Megy K, Audic S, Claverie JM (2002) Heart-specific genes revealed by expressed sequence tag (EST) sampling. Genome Biol 2002 ;3(12):RESEARCH0074. - PMID:12537563

  112. Megy K, Audic S, Claverie JM (2002) Heart specific genes revealed by EST sampling. Genome Biol 2002 Aug 16 ;3(9):PREPRINT0008. - PMID:12225578

  113. Ogata H, Audic S, Abergel C, Fournier PE, Claverie JM (2002) Protein coding palindromes are a unique but recurrent feature in Rickettsia. Genome Res 2002 May ;12(5):808-16. - PMID:11997347

  114. Monchois V., Vincentelli R., Abergel C., Deregnaucourt C., Claverie J.-M. and Monchois V. (2002) Proficient target selection in structural genomic by In vitro protein expression on Gateway recombination plasmids. Cell-Free Translation Systems (Spirin Ed.) Springer Verlag : () 197- 202.

  115. Claverie JM, Abergel C, Audic S, Ogata H (2001) Recent advances in computational genomics. Pharmacogenomics 2001 Nov ;2(4):361-72. - PMID:11722286

  116. Ogata H, Audic S, Renesto-Audiffren P, Fournier PE, Barbe V, Samson D, Roux V, Cossart P, Weissenbach J, Claverie JM, Raoult D (2001) Mechanisms of evolution in Rickettsia conorii and R. prowazekii. Science 2001 Sep 14 ;293(5537):2093-8. - PMID:11557893

  117. Monchois V, Abergel C, Sturgis J, Jeudy S, Claverie JM (2001) Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme. J Biol Chem 2001 May 25 ;276(21):18437-41. - PMID:11278658

  118. Claverie JM (2001) [Transcriptome analysis in cancerology: bioinformatics aspects] Bull Cancer 2001 Mar ;88(3):269-76. - PMID:11313204

  119. Claverie JM (2001) Gene number. What if there are only 30,000 human genes? Science 2001 Feb 16 ;291(5507):1255-7. - PMID:11233450

  120. Claverie J.-M. (2001) Bioinformatics of transcriptome analysis in Cancer Biology. Bull. Cancer 88 : 269-276.

  121. Claverie J.-M. (2001) Le dècryptage du gènome humain : du fantasme ? la rèalitè mèdicale Concours Medical 123 : 429-429.

  122. Abergel C, Monchois V, Chenivesse S, Jeudy S, Claverie JM (2000) Crystallization and preliminary crystallographic study of b0220, an 'ORFan' protein of unknown function from Escherichia coli. Acta Crystallogr D Biol Crystallogr 2000 Dec ;56 Pt 12:1694-5. - PMID:11092949

  123. Matarazzo V, Tirard A, Renucci M, Botto JM, Bel MC, Claverie JM, Belaich A, Clement JL (2000) Identification of odorant receptors from the Alpine marmot (Marmota marmota). Cell Mol Biol (Noisy-le-grand) 2000 Nov ;46(7):1249-58. - PMID:11075954

  124. Cambillau C, Claverie JM (2000) Structural and genomic correlates of hyperthermostability. J Biol Chem 2000 Oct 20 ;275(42):32383-6. - PMID:10940293

  125. Ogata H, Audic S, Barbe V, Artiguenave F, Fournier PE, Raoult D, Claverie JM (2000) Selfish DNA in protein-coding genes of Rickettsia. Science 2000 Oct 13 ;290(5490):347-50. - PMID:11030655

  126. Claverie JM (2000) From bioinformatics to computational biology. Genome Res 2000 Sep ;10(9):1277-9. - PMID:10984445

  127. Alimi JP, Poirot O, Lopez F, Claverie JM (2000) Reverse transcriptase-polymerase chain reaction validation of 25 orphan genes from Escherichia coli K-12 MG1655. Genome Res 2000 Jul ;10(7):959-66. - PMID:10899145

  128. Beaudoing E, Freier S, Wyatt JR, Claverie JM, Gautheret D (2000) Patterns of variant polyadenylation signal usage in human genes. Genome Res 2000 Jul ;10(7):1001-10. - PMID:10899149

  129. Claverie JM (2000) Do we need a huge new centre to annotate the human genome? Nature 2000 Jan 6 ;403(6765):12. - PMID:10638729

  130. Ewing RM, Claverie JM (2000) EST databases as multi-conditional gene expression datasets. Pac Symp Biocomput 2000 ;:430-42. - PMID:10902191

  131. Ewing R, Poirot O, Claverie JM (2000) Comparative analysis of the Arabidopsis and rice expressed sequence tag (EST) sets. In Silico Biol 1999-2000 ;1(4):197-213. - PMID:11479934

  132. BenKahla A., Robertson D.L., Beaudoing E., Claverie J.-M. (2000) The Detection of Putative Recombinant Sequence Using BLAST. Proceedings of the German Conference on Bioinformatics. : 3- 9.

  133. Abergel C, Bouveret E, Claverie JM, Brown K, Rigal A, Lazdunski C, Benedetti H (1999) Structure of the Escherichia coli TolB protein determined by MAD methods at 1.95 A resolution. Structure Fold Des 1999 Oct 15 ;7(10):1291-300. - PMID:10545334

  134. Ewing RM, Kahla AB, Poirot O, Lopez F, Audic S, Claverie JM. (1999) Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res. 1999 Oct ;9(10):950-9. - PMID:10523523

  135. Claverie JM (1999) Computational methods for the identification of differential and coordinated gene expression. Hum Mol Genet 1999 ;8(10):1821-32. - PMID:10469833

  136. Abergel C, Robertson DL, Claverie JM (1999) Hidden dUTPase sequence in human immunodeficiency virus type 1 gp120. J Virol 1999 Jan ;73(1):751-3. - PMID:9847382

  137. Claverie J.-M., Lopez F. and Abergel C (1999) A New Strategy and Software System for the Design of Functional Signatures in Protein Sequences, in Perspective in Structural Biology. Indian Acad. Sciences and the Universities Press,Hyderabad, India.(M. Vijayan, ed.). Chap. 51 : () 680- 700.

  138. Abergel C, Chavrier P, Claverie JM (1998) Triple association of CDC25-, Dbl- and Sec7-related domains in mammalian guanine-nucleotide-exchange factors. Trends Biochem Sci 1998 Dec ;23(12):472-3. - PMID:9868368

  139. Audic S, Claverie JM (1998) Self-identification of protein-coding regions in microbial genomes. Proc Natl Acad Sci U S A 1998 Aug 18 ;95(17):10026-31. - PMID:9707594

  140. Claverie JM (1998) Computational methods for exon detection. Mol Biotechnol 1998 Aug ;10(1):27-48. - PMID:9779421

  141. Gapin L, Fukui Y, Kanellopoulos J, Sano T, Casrouge A, Malier V, Beaudoing E, Gautheret D, Claverie JM, Sasazuki T, Kourilsky P (1998) Quantitative analysis of the T cell repertoire selected by a single peptide-major histocompatibility complex. J Exp Med 1998 Jun 1 ;187(11):1871-83. - PMID:9607927

  142. Gautheret D, Poirot O, Lopez F, Audic S, Claverie JM (1998) Alternate polyadenylation in human mRNAs: a large-scale analysis by EST clustering. Genome Res 1998 May ;8(5):524-30. - PMID:9582195

  143. Audic S, Claverie JM (1998) Visualizing the competitive recognition of TATA-boxes in vertebrate promoters. Trends Genet 1998 Jan ;14(1):10-1. - PMID:9448460

  144. Abergel C, Rigal A, Chenivesse S, Lazdunski C, Claverie JM, Bouveret E, Benedetti H (1998) Crystallization and preliminary crystallographic study of a component of the Escherichia coli tol system: TolB. Acta Crystallogr D Biol Crystallogr 1998 Jan 1 ;54 ( Pt 1):102-4. - PMID:9761825

  145. Audic S, Lopez F, Claverie JM, Poirot O, Abergel C (1997) SAmBA: an interactive software for optimizing the design of biological macromolecules crystallization experiments. Proteins 1997 Oct ;29(2):252-7. - PMID:9329089

  146. Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 1997 Oct ;7(10):986-95. - PMID:9331369

  147. Claverie JM (1997) Exon detection by similarity searches. Methods Mol Biol 1997 ;68:283-313. - PMID:9055264

  148. Claverie JM (1997) Computational methods for the identification of genes in vertebrate genomic sequences. Hum Mol Genet 1997 ;6(10):1735-44. - PMID:9300666

  149. Claverie JM, Poirot O, Lopez F (1997) The difficulty of identifying genes in anonymous vertebrate sequences. Comput Chem 1997 ;21(4):203-14. - PMID:9415985

  150. Audic S, Claverie JM (1997) Detection of eukaryotic promoters using Markov transition matrices. Comput Chem 1997 ;21(4):223-7. - PMID:9440929

  151. Claverie JM, Audic S (1996) The statistical significance of nucleotide position-weight matrix matches. Comput Appl Biosci 1996 Oct ;12(5):431-9. - PMID:8996792

  152. Claverie JM (1996) Effective large-scale sequence similarity searches. Methods Enzymol 1996 ;266:212-27. - PMID:8743687

  153. Vaslin B, Claverie JM, Benveniste O, Barre-Sinoussi FC, Dormont D (1994) Nef and Gag synthetic peptide priming of antibody responses to HIV type 1 antigens in mice and primates. AIDS Res Hum Retroviruses 1994 Oct ;10(10):1241-50. - PMID:7531460

  154. Claverie JM (1994) A streamlined random sequencing strategy for finding coding exons. Genomics 1994 Oct ;23(3):575-81. - PMID:7851885

  155. Claverie JM, Makalowski W (1994) Alu alert. Nature 1994 Oct 27 ;371(6500):752. - PMID:7935834

  156. Claverie JM (1994) Some useful statistical properties of position-weight matrices. Comput Chem 1994 Sep ;18(3):287-94. - PMID:7952899

  157. Claverie JM (1993) Detecting frame shifts by amino acid sequence comparison. J Mol Biol 1993 Dec 20 ;234(4):1140-57. - PMID:7903399

  158. Majlessi L, Roth C, Benaroch P, Claverie JM, Kourilsky P, Bordenave G (1993) Identification of T cell peptides from C gamma 2ab involved in IgG2ab T cell-induced allotypic suppression. Relationship with the MHC haplotype of the suppressor T cell-donor Igha mice. J Immunol 1993 Aug 1 ;151(3):1263-72. - PMID:8335928

  159. Claverie JM (1993) Database of ancient sequences. Nature 1993 Jul 1 ;364(6432):19-20. - PMID:8316293

  160. Green P, Lipman D, Hillier L, Waterston R, States D, Claverie JM (1993) Ancient conserved regions in new gene sequences and the protein databases. Science 1993 Mar 19 ;259(5102):1711-6. - PMID:8456298

  161. Iris FJ, Bougueleret L, Prieur S, Caterina D, Primas G, Perrot V, Jurka J, Rodriguez-Tome P, Claverie JM, Dausset J, et al. (1993) Dense Alu clustering and a potential new member of the NF kappa B family within a 90 kilobase HLA class III segment. Nat Genet 1993 Feb ;3(2):137-45. - PMID:8499947

  162. Claverie JM, Hardelin JP, Legouis R, Levilliers J, Bougueleret L, Mattei MG, Petit C (1993) Characterization and chromosomal assignment of a human cDNA encoding a protein related to the murine 102-kDa cadherin-associated protein (alpha-catenin). Genomics 1993 Jan ;15(1):13-20. - PMID:8432524

  163. Behr C, Sarthou JL, Rogier C, Trape JF, Dat MH, Michel JC, Aribot G, Dieye A, Claverie JM, Druihle P, et al. (1992) Antibodies and reactive T cells against the malaria heat-shock protein Pf72/Hsp70-1 and derived peptides in individuals continuously exposed to Plasmodium falciparum. J Immunol 1992 Nov 15 ;149(10):3321-30. - PMID:1431109

  164. Prabhu VV, Claverie JM (1992) Correlations in intronless DNA. Nature 1992 Oct 29 ;359(6398):782. - PMID:1436053

  165. Claverie JM (1992) Identifying coding exons by similarity search: alu-derived and other potentially misleading protein sequences. Genomics 1992 Apr ;12(4):838-41. - PMID:1572661

  166. Sette A, Vitiello A, Farness P, Furze J, Sidney J, Claverie JM, Grey HM, Chesnut R (1991) Random association between the peptide repertoire of A2.1 class I and several different DR class II molecules. J Immunol 1991 Dec 1 ;147(11):3893-900. - PMID:1658152

  167. Abergel C, Claverie JM (1991) A strong propensity toward loop formation characterizes the expressed reading frames of the D segments at the Ig H and T cell receptor loci. Eur J Immunol 1991 Dec ;21(12):3021-5. - PMID:1660812

  168. Legouis R, Hardelin JP, Levilliers J, Claverie JM, Compain S, Wunderle V, Millasseau P, Le Paslier D, Cohen D, Caterina D, et al. (1991) The candidate gene for the X-linked Kallmann syndrome encodes a protein related to adhesion molecules. Cell 1991 Oct 18 ;67(2):423-35. - PMID:1913827

  169. Prochnicka-Chalufour A, Casanova JL, Avrameas S, Claverie JM, Kourilsky P (1991) Biased amino acid distributions in regions of the T cell receptors and MHC molecules potentially involved in their association. Int Immunol 1991 Sep ;3(9):853-64. - PMID:1931813

  170. Claverie JM, Sauvaget I (1991) WOBB.C: a portable software package for defining and searching ambiguous sequence patterns. Protein Seq Data Anal 1991 Aug ;4(2):119-21. - PMID:1946329

  171. Haas G, David R, Frank R, Gausepohl H, Devaux C, Claverie JM, Pierres M (1991) Identification of a major human immunodeficiency virus-1 reverse transcriptase epitope recognized by mouse CD4+ T lymphocytes. Eur J Immunol 1991 Jun ;21(6):1371-7. - PMID:1710563

  172. Claverie JM, Daulmerie C (1991) Smoothing profiles with sliding windows: better to wear a hat! Comput Appl Biosci 1991 Jan ;7(1):113-5. - PMID:2004269

  173. Maschat F, Dubertret ML, Therond P, Claverie JM, Lepesant JA (1990) Structure of the ecdysone-inducible P1 gene of Drosophila melanogaster. J Mol Biol 1990 Jul 20 ;214(2):359-72. - PMID:1696317

  174. Claverie JM (1990) Protein instruction. Nature 1990 May 10 ;345(6271):121-2. - PMID:2186280

  175. Claverie JM, Sauvaget I, Bougueleret L (1990) K-tuple frequency analysis: from intron/exon discrimination to T-cell epitope mapping. Methods Enzymol 1990 ;183:237-52. - PMID:1690334

  176. Abergel C, Loret E, Claverie JM (1989) Conformational analysis of T immunogenic peptides by circular dichroism spectroscopy. Eur J Immunol 1989 Oct ;19(10):1969-72. - PMID:2511030

  177. Kourilsky P, Claverie JM (1989) MHC restriction, alloreactivity, and thymic education: a common link? Cell 1989 Feb 10 ;56(3):327-9. - PMID:2492449

  178. Prochnicka-Chalufour A, Casanova JL, Kourilsky P, Claverie JM (1989) Extensive structural homology between H-2 K/D/L antigens and non-polymorphic class I Qa, Tla and 37 molecules suggests they may act as peptide carriers. Res Immunol 1989 Feb ;140(2):133-44. - PMID:2740613

  179. Kourilsky P, Claverie JM (1989) MHC-antigen interaction: what does the T cell receptor see? Adv Immunol 1989 ;45:107-93. - PMID:2665438

  180. Claverie JM, Prochnicka-Chalufour A, Bougueleret L (1989) Implications of a Fab-like structure for the T-cell receptor. Immunol Today 1989 Jan ;10(1):10-4. - PMID:2665768

  181. Kourilsky P, Claverie JM, Prochnicka-Chalufour A, Spetz-Hagberg AL, Larsson-Sciard EL (1989) How important is the direct recognition of polymorphic MHC residues by TCR in the generation of the T-cell repertoire? Cold Spring Harb Symp Quant Biol 1989 ;54 Pt 1:93-103. - PMID:2700950

  182. Claverie JM, Kourilsky P, Langlade-Demoyen P, Chalufour-Prochnicka A, Dadaglio G, Tekaia F, Plata F, Bougueleret L (1988) T-immunogenic peptides are constituted of rare sequence patterns. Use in the identification of T epitopes in the human immunodeficiency virus gag protein. Eur J Immunol 1988 Oct ;18(10):1547-53. - PMID:2461306

  183. Bougueleret L, Tekaia F, Sauvaget I, Claverie JM (1988) Objective comparison of exon and intron sequences by means of 2-dimensional data analysis methods. Nucleic Acids Res 1988 Mar 11 ;16(5):1729-38. - PMID:3353220

  184. Bairoch A, Claverie JM (1988) Sequence patterns in protein kinases. Nature 1988 Jan 7 ;331(6151):22. - PMID:3340146

  185. Chalufour A, Bougueleret L, Claverie JM, Kourilsky P (1987) Rare sequence motifs are common constituents of hypervariable antibody regions. Ann Inst Pasteur Immunol 1987 Sep-Oct ;138(5):671-85. - PMID:3125843

  186. Tekaia F, Derlot E, Claverie JM, Courvalin P (1987) [Quality control of multicenter evaluation studies of the in vitro activity of antibiotics] Pathol Biol (Paris) 1987 Jun ;35(5 Pt 2):687-91. - PMID:3309798

  187. Kourilsky P, Chaouat G, Rabourdin-Combe C, Claverie JM (1987) Working principles in the immune system implied by the peptidic self model. Proc Natl Acad Sci U S A 1987 May ;84(10):3400-4. - PMID:3494999

  188. Belhumeur P, Paterno GD, Boileau G, Claverie JM, Skup D (1987) Isolation and characterisation of a murine cDNA clone highly homologous to the yeast L29 ribosomal protein gene. Nucleic Acids Res 1987 Feb 11 ;15(3):1019-29. - PMID:2434927

  189. Bougueleret L, Claverie JM (1987) Variability analysis of the human and mouse T-cell receptor beta chains. Immunogenetics 1987 ;26(4-5):304-8. - PMID:3653942

  190. Claverie JM, Kourilsky P (1986) The peptidic self model: a reassessment of the role of the major histocompatibility complex molecules in the restriction of the T-cell response. Ann Inst Pasteur Immunol 1986 Nov-Dec ;137D(3):425-42. - PMID:3103648

  191. Bougueleret L, Claverie JM (1986) Relevance of the lariat model to the splicing of the H-2 gene family. Eur J Biochem 1986 Oct 15 ;160(2):279-84. - PMID:3769928

  192. Claverie JM, Bricault L (1986) PseqIP: a nonredundant and exhaustive protein sequence data bank generated from 4 major existing collections. Proteins 1986 Sep ;1(1):60-5. - PMID:3449852

  193. Kourilsky P, Claverie JM (1986) The peptidic self model: a hypothesis on the molecular nature of the immunological self. Ann Inst Pasteur Immunol 1986 Jul-Aug ;137D(1):3-21. - PMID:3489434

  194. Claverie JM, Bougueleret L, Ooi T (1986) [Neg-entropy and local information content: a new approach to the analysis of nucleotide and amino-acid sequences] Tanpakushitsu Kakusan Koso 1986 Jun ;(29 Suppl):111-22. - PMID:3534948

  195. Claverie JM, Bougueleret L (1986) Heuristic informational analysis of sequences. Nucleic Acids Res 1986 Jan 10 ;14(1):179-96. - PMID:3753763

  196. Claverie JM, Sauvaget I (1985) A new protein sequence data bank. Nature 1985 Nov 7-13 ;318(6041):19. - PMID:4058589

  197. Claverie JM, Sauvaget I, Bougueleret L (1985) Computer generation and statistical analysis of a data bank of protein sequences translated from GenBank. Biochimie 1985 May ;67(5):437-43. - PMID:3927990

  198. Claverie JM, Sauvaget I (1985) Assessing the biological significance of primary structure consensus patterns using sequence databanks. I. Heat-shock and glucocorticoid control elements in eukaryotic promoters. Comput Appl Biosci 1985 ;1(2):95-104. - PMID:3880336

  199. Debuire B, Henry C, Bernissa M, Biserte G, Claverie JM, Saule S, Martin P, Stehelin D (1984) Sequencing the erbA gene of avian erythroblastosis virus reveals a new type of oncogene. Science 1984 Jun 29 ;224(4656):1456-9. - PMID:6328658

  200. Claverie JM (1984) A common philosophy and FORTRAN 77 software package for implementing and searching sequence databases. Nucleic Acids Res 1984 Jan 11 ;12(1 Pt 1):397-407. - PMID:6546424

  201. Claverie JM, Cohn M (1983) T lymphoma variants with specifically altered growth in semi-solid media. Int J Cancer 1983 Nov 15 ;32(5):641-3. - PMID:6642758

  202. Claverie JM (1980) A new simple method to determine the diffusion coefficient from active enzyme centrifugation experiments. Arch Biochem Biophys 1980 Jun ;202(1):160-7. - PMID:7396532

  203. Claverie JM, de Souza AC, Thirion JP (1979) Mutations of Chinese hamster somatic cells from 2-deoxygalactose sensitivity to resistance. Genetics 1979 Jun ;92(2):563-72. - PMID:488705

  204. Huet M, Claverie JM (1978) Sedimentation studies of the reversible dimer-tetramer transition kinetics of concanavalin A. Biochemistry 1978 Jan 24 ;17(2):236-41. - PMID:619990

  205. Delobbe A, Chalumeau H, Claverie JM, Gay P (1976) Phosphorylation of intracellular fructose in Bacillus subtilis mediated by phosphoenolpyruvate-1-fructose phosphotransferase. Eur J Biochem 1976 Jul 15 ;66(3):485-91. - PMID:821752

  206. Claverie JM (1976) Sedimentation of generalized systems of interacting particles. III. Concentration-dependent sedimentation and extension to other transport methods. Biopolymers 1976 May ;15(5):843-57. - PMID:9925410

  207. Claverie JM, Dreux H, Cohen R (1975) Sedimentation of generalized systems of interacting particles. I. Solution of systems of complete Lamm equations. Biopolymers 1975 Aug ;14(8):1685-1700. - PMID:1156660

  208. Cohen R, Claverie JM (1975) Sedimentation of generalized systems of interacting particles. II. Active enzyme centrifugation--theory and extensions of its validity range. Biopolymers 1975 Aug ;14(8):1701-16. - PMID:1156661

  209. Claverie JM, Mattioda G (1973) [Research on anti-inflammatory indazoles] Farmaco [Sci] 1973 Jul ;28(7):523-7. - PMID:4718399

  210. Claverie JM (0000) cc dd,2012 May